data_6XLP # _model_server_result.job_id rMhIPCf8OqVgINOGBhV5EQ _model_server_result.datetime_utc '2024-11-26 11:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":615}' # _entry.id 6XLP # _exptl.entry_id 6XLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.45 _cell.angle_gamma 90 _cell.entry_id 6XLP _cell.length_a 171.272 _cell.length_b 56.328 _cell.length_c 97.359 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 1 2 VJ4 VJ1 C1 O1 . O6 HO6 . sing 2 ? 2 3 1 KDO VJ4 C2 O2 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B VJ4 1 B 1 VJ4 A 600 GCS 2 n B VJ1 2 B 2 VJ1 A 601 FTT 2 n B KDO 3 B 3 KDO A 598 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 VJ4 . B VJ4 1 1_555 B O6 VJ1 . B VJ1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 B O6 VJ4 . B VJ4 1 1_555 B C2 KDO . B KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 386 n n C1 O20 OLB sing 387 n n C2 C1 OLB sing 388 n n C3 C2 OLB sing 389 n n C4 C3 OLB sing 390 n n C5 C4 OLB sing 391 n n C5 C6 OLB sing 392 n n O20 C21 OLB sing 393 n n C21 C22 OLB sing 394 n n C22 C24 OLB sing 395 n n O23 C22 OLB sing 396 n n C24 O25 OLB sing 397 n n C6 C7 OLB sing 398 n n C7 C8 OLB sing 399 n n C8 C9 OLB sing 400 n n C9 C10 OLB doub 401 z n C10 C11 OLB sing 402 n n C2 H2 OLB sing 403 n n C2 H2A OLB sing 404 n n C3 H3 OLB sing 405 n n C3 H3A OLB sing 406 n n C4 H4 OLB sing 407 n n C4 H4A OLB sing 408 n n C5 H5 OLB sing 409 n n C5 H5A OLB sing 410 n n C21 H21 OLB sing 411 n n C21 H21A OLB sing 412 n n C22 H22 OLB sing 413 n n O23 HO23 OLB sing 414 n n C24 H24 OLB sing 415 n n C24 H24A OLB sing 416 n n O25 HO25 OLB sing 417 n n C6 H16 OLB sing 418 n n C6 H17 OLB sing 419 n n C7 H18 OLB sing 420 n n C7 H19 OLB sing 421 n n C8 H20 OLB sing 422 n n C8 H211 OLB sing 423 n n C9 H221 OLB sing 424 n n C10 H23 OLB sing 425 n n C11 H241 OLB sing 426 n n C11 H25 OLB sing 427 n n C11 C12 OLB sing 428 n n C12 H26 OLB sing 429 n n C12 C13 OLB sing 430 n n C12 H27 OLB sing 431 n n C13 C14 OLB sing 432 n n C13 H28 OLB sing 433 n n C13 H29 OLB sing 434 n n C14 H30 OLB sing 435 n n C14 H31 OLB sing 436 n n C14 C15 OLB sing 437 n n C15 C16 OLB sing 438 n n C15 H32 OLB sing 439 n n C15 H33 OLB sing 440 n n C16 H34 OLB sing 441 n n C16 H35 OLB sing 442 n n C16 C17 OLB sing 443 n n C17 C18 OLB sing 444 n n C17 H36 OLB sing 445 n n C17 H37 OLB sing 446 n n C18 H38 OLB sing 447 n n C18 H39 OLB sing 448 n n C18 H40 OLB sing 449 n n # _atom_sites.entry_id 6XLP _atom_sites.fract_transf_matrix[1][1] 0.005839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 601 607 SO4 SO4 . D 3 SO4 A 1 602 608 SO4 SO4 . E 3 SO4 A 1 603 609 SO4 SO4 . F 3 SO4 A 1 604 610 SO4 SO4 . G 3 SO4 A 1 605 611 SO4 SO4 . H 3 SO4 A 1 606 612 SO4 SO4 . I 3 SO4 A 1 607 613 SO4 SO4 . J 3 SO4 A 1 608 614 SO4 SO4 . K 4 OLB A 1 609 615 OLB OLB . L 4 OLB A 1 610 616 OLB OLB . M 4 OLB A 1 611 617 OLB OLB . N 4 OLB A 1 612 618 OLB OLB . O 4 OLB A 1 613 619 OLB OLB . P 4 OLB A 1 614 620 OLB OLB . Q 4 OLB A 1 615 621 OLB OLB . R 4 OLB A 1 616 622 OLB OLB . S 5 PG4 A 1 617 623 PG4 PG4 . T 5 PG4 A 1 618 624 PG4 PG4 . U 5 PG4 A 1 619 625 PG4 PG4 . V 6 3PE A 1 620 626 3PE 3PE . W 7 HOH A 1 701 701 HOH HOH . W 7 HOH A 2 702 702 HOH HOH . W 7 HOH A 3 703 703 HOH HOH . W 7 HOH A 4 704 704 HOH HOH . W 7 HOH A 5 705 705 HOH HOH . W 7 HOH A 6 706 706 HOH HOH . W 7 HOH A 7 707 707 HOH HOH . W 7 HOH A 8 708 708 HOH HOH . W 7 HOH A 9 709 709 HOH HOH . W 7 HOH A 10 710 710 HOH HOH . W 7 HOH A 11 711 711 HOH HOH . W 7 HOH A 12 712 712 HOH HOH . W 7 HOH A 13 713 713 HOH HOH . W 7 HOH A 14 714 714 HOH HOH . W 7 HOH A 15 715 715 HOH HOH . W 7 HOH A 16 716 716 HOH HOH . W 7 HOH A 17 717 717 HOH HOH . W 7 HOH A 18 718 718 HOH HOH . W 7 HOH A 19 719 719 HOH HOH . W 7 HOH A 20 720 721 HOH HOH . W 7 HOH A 21 721 722 HOH HOH . W 7 HOH A 22 722 723 HOH HOH . W 7 HOH A 23 723 724 HOH HOH . W 7 HOH A 24 724 725 HOH HOH . W 7 HOH A 25 725 726 HOH HOH . W 7 HOH A 26 726 727 HOH HOH . W 7 HOH A 27 727 728 HOH HOH . W 7 HOH A 28 728 729 HOH HOH . W 7 HOH A 29 729 730 HOH HOH . W 7 HOH A 30 730 731 HOH HOH . W 7 HOH A 31 731 732 HOH HOH . W 7 HOH A 32 732 733 HOH HOH . W 7 HOH A 33 733 734 HOH HOH . W 7 HOH A 34 734 735 HOH HOH . W 7 HOH A 35 735 736 HOH HOH . W 7 HOH A 36 736 737 HOH HOH . W 7 HOH A 37 737 738 HOH HOH . W 7 HOH A 38 738 739 HOH HOH . W 7 HOH A 39 739 740 HOH HOH . W 7 HOH A 40 740 741 HOH HOH . W 7 HOH A 41 741 742 HOH HOH . W 7 HOH A 42 742 743 HOH HOH . W 7 HOH A 43 743 744 HOH HOH . W 7 HOH A 44 744 745 HOH HOH . W 7 HOH A 45 745 746 HOH HOH . W 7 HOH A 46 746 747 HOH HOH . W 7 HOH A 47 747 748 HOH HOH . W 7 HOH A 48 748 749 HOH HOH . W 7 HOH A 49 749 750 HOH HOH . W 7 HOH A 50 750 751 HOH HOH . W 7 HOH A 51 751 752 HOH HOH . W 7 HOH A 52 752 753 HOH HOH . W 7 HOH A 53 753 754 HOH HOH . W 7 HOH A 54 754 755 HOH HOH . W 7 HOH A 55 755 756 HOH HOH . W 7 HOH A 56 756 757 HOH HOH . W 7 HOH A 57 757 758 HOH HOH . W 7 HOH A 58 758 759 HOH HOH . W 7 HOH A 59 759 760 HOH HOH . W 7 HOH A 60 760 761 HOH HOH . W 7 HOH A 61 761 762 HOH HOH . W 7 HOH A 62 762 763 HOH HOH . W 7 HOH A 63 763 764 HOH HOH . W 7 HOH A 64 764 765 HOH HOH . W 7 HOH A 65 765 766 HOH HOH . W 7 HOH A 66 766 767 HOH HOH . W 7 HOH A 67 767 768 HOH HOH . W 7 HOH A 68 768 769 HOH HOH . W 7 HOH A 69 769 770 HOH HOH . W 7 HOH A 70 770 771 HOH HOH . W 7 HOH A 71 771 772 HOH HOH . W 7 HOH A 72 772 773 HOH HOH . W 7 HOH A 73 773 774 HOH HOH . W 7 HOH A 74 774 775 HOH HOH . W 7 HOH A 75 775 776 HOH HOH . W 7 HOH A 76 776 777 HOH HOH . W 7 HOH A 77 777 778 HOH HOH . W 7 HOH A 78 778 779 HOH HOH . W 7 HOH A 79 779 780 HOH HOH . W 7 HOH A 80 780 781 HOH HOH . W 7 HOH A 81 781 782 HOH HOH . W 7 HOH A 82 782 783 HOH HOH . W 7 HOH A 83 783 784 HOH HOH . W 7 HOH A 84 784 785 HOH HOH . W 7 HOH A 85 785 786 HOH HOH . W 7 HOH A 86 786 787 HOH HOH . W 7 HOH A 87 787 788 HOH HOH . W 7 HOH A 88 788 789 HOH HOH . W 7 HOH A 89 789 790 HOH HOH . W 7 HOH A 90 790 791 HOH HOH . W 7 HOH A 91 791 792 HOH HOH . W 7 HOH A 92 792 793 HOH HOH . W 7 HOH A 93 793 794 HOH HOH . W 7 HOH A 94 794 795 HOH HOH . W 7 HOH A 95 795 796 HOH HOH . W 7 HOH A 96 796 797 HOH HOH . W 7 HOH A 97 797 798 HOH HOH . W 7 HOH A 98 798 799 HOH HOH . W 7 HOH A 99 799 800 HOH HOH . W 7 HOH A 100 800 801 HOH HOH . W 7 HOH A 101 801 720 HOH HOH . W 7 HOH A 102 802 802 HOH HOH . W 7 HOH A 103 803 803 HOH HOH . W 7 HOH A 104 804 804 HOH HOH . W 7 HOH A 105 805 805 HOH HOH . W 7 HOH A 106 806 806 HOH HOH . W 7 HOH A 107 807 807 HOH HOH . W 7 HOH A 108 808 808 HOH HOH . W 7 HOH A 109 809 809 HOH HOH . W 7 HOH A 110 810 810 HOH HOH . W 7 HOH A 111 811 811 HOH HOH . W 7 HOH A 112 812 812 HOH HOH . W 7 HOH A 113 813 813 HOH HOH . W 7 HOH A 114 814 814 HOH HOH . W 7 HOH A 115 815 815 HOH HOH . W 7 HOH A 116 816 816 HOH HOH . W 7 HOH A 117 817 817 HOH HOH . W 7 HOH A 118 818 818 HOH HOH . W 7 HOH A 119 819 819 HOH HOH . W 7 HOH A 120 820 820 HOH HOH . W 7 HOH A 121 821 821 HOH HOH . W 7 HOH A 122 822 822 HOH HOH . W 7 HOH A 123 823 823 HOH HOH . W 7 HOH A 124 824 824 HOH HOH . W 7 HOH A 125 825 825 HOH HOH . W 7 HOH A 126 826 826 HOH HOH . W 7 HOH A 127 827 827 HOH HOH . W 7 HOH A 128 828 828 HOH HOH . W 7 HOH A 129 829 829 HOH HOH . W 7 HOH A 130 830 830 HOH HOH . W 7 HOH A 131 831 831 HOH HOH . W 7 HOH A 132 832 832 HOH HOH . W 7 HOH A 133 833 833 HOH HOH . W 7 HOH A 134 834 834 HOH HOH . W 7 HOH A 135 835 835 HOH HOH . W 7 HOH A 136 836 836 HOH HOH . W 7 HOH A 137 837 837 HOH HOH . W 7 HOH A 138 838 838 HOH HOH . W 7 HOH A 139 839 839 HOH HOH . W 7 HOH A 140 840 840 HOH HOH . W 7 HOH A 141 841 841 HOH HOH . W 7 HOH A 142 842 842 HOH HOH . W 7 HOH A 143 843 843 HOH HOH . W 7 HOH A 144 844 844 HOH HOH . W 7 HOH A 145 845 845 HOH HOH . W 7 HOH A 146 846 846 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 OLB . . . Q 4 -11.326 49.038 68.735 1 63.56 ? O20 OLB 615 A 1 HETATM 2 C C21 OLB . . . Q 4 -12.416 48.842 69.607 1 66.28 ? C21 OLB 615 A 1 HETATM 3 C C22 OLB . . . Q 4 -11.808 48.371 70.98 1 68.15 ? C22 OLB 615 A 1 HETATM 4 O O23 OLB . . . Q 4 -11.521 49.51 71.745 1 68.11 ? O23 OLB 615 A 1 HETATM 5 C C24 OLB . . . Q 4 -12.861 47.602 71.823 1 67.83 ? C24 OLB 615 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #