data_6XLW # _model_server_result.job_id XHCeb4Nwt8LO-080evAL1g _model_server_result.datetime_utc '2024-11-22 22:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xlw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6XLW # _exptl.entry_id 6XLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XLW _cell.length_a 43.398 _cell.length_b 62.731 _cell.length_c 77.427 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 5 B U 6 1_555 B P BRU 6 B BRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 B O3' BRU 6 B BRU 7 1_555 B P C 7 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? metalc ? metalc1 A OD1 ASN 18 A ASN 155 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc2 A O LYS 58 A LYS 195 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc3 A OD1 ASN 59 A ASN 196 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc4 A OG SER 157 A SER 294 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 A O SER 157 A SER 294 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc6 E NA NA . A NA 403 1_555 I O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 E NA NA . A NA 403 1_555 I O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 E NA NA . A NA 403 1_555 I O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 E NA NA . A NA 403 1_555 I O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 E NA NA . A NA 403 1_555 J O HOH . B HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc11 G NA NA . A NA 405 1_555 I O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc12 G NA NA . A NA 405 1_555 I O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc13 G NA NA . A NA 405 1_555 B O4 U 5 B U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc14 H NA NA . A NA 406 1_555 I O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc15 H NA NA . A NA 406 1_555 B O2 U 5 B U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc16 H NA NA . A NA 406 1_555 J O HOH . B HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XLW _atom_sites.fract_transf_matrix[1][1] 0.023043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 401 GOL GOL . D 4 PEG A 1 402 402 PEG PEG . E 5 NA A 1 403 404 NA NA . F 5 NA A 1 404 405 NA NA . G 5 NA A 1 405 406 NA NA . H 5 NA A 1 406 407 NA NA . I 6 HOH A 1 501 503 HOH HOH . I 6 HOH A 2 502 505 HOH HOH . I 6 HOH A 3 503 504 HOH HOH . I 6 HOH A 4 504 507 HOH HOH . I 6 HOH A 5 505 511 HOH HOH . I 6 HOH A 6 506 509 HOH HOH . I 6 HOH A 7 507 508 HOH HOH . I 6 HOH A 8 508 762 HOH HOH . I 6 HOH A 9 509 513 HOH HOH . I 6 HOH A 10 510 514 HOH HOH . I 6 HOH A 11 511 516 HOH HOH . I 6 HOH A 12 512 515 HOH HOH . I 6 HOH A 13 513 518 HOH HOH . I 6 HOH A 14 514 552 HOH HOH . I 6 HOH A 15 515 763 HOH HOH . I 6 HOH A 16 516 520 HOH HOH . I 6 HOH A 17 517 595 HOH HOH . I 6 HOH A 18 518 581 HOH HOH . I 6 HOH A 19 519 531 HOH HOH . I 6 HOH A 20 520 523 HOH HOH . I 6 HOH A 21 521 528 HOH HOH . I 6 HOH A 22 522 535 HOH HOH . I 6 HOH A 23 523 532 HOH HOH . I 6 HOH A 24 524 526 HOH HOH . I 6 HOH A 25 525 533 HOH HOH . I 6 HOH A 26 526 521 HOH HOH . I 6 HOH A 27 527 569 HOH HOH . I 6 HOH A 28 528 545 HOH HOH . I 6 HOH A 29 529 538 HOH HOH . I 6 HOH A 30 530 536 HOH HOH . I 6 HOH A 31 531 529 HOH HOH . I 6 HOH A 32 532 540 HOH HOH . I 6 HOH A 33 533 542 HOH HOH . I 6 HOH A 34 534 534 HOH HOH . I 6 HOH A 35 535 539 HOH HOH . I 6 HOH A 36 536 577 HOH HOH . I 6 HOH A 37 537 547 HOH HOH . I 6 HOH A 38 538 524 HOH HOH . I 6 HOH A 39 539 530 HOH HOH . I 6 HOH A 40 540 558 HOH HOH . I 6 HOH A 41 541 543 HOH HOH . I 6 HOH A 42 542 560 HOH HOH . I 6 HOH A 43 543 541 HOH HOH . I 6 HOH A 44 544 548 HOH HOH . I 6 HOH A 45 545 549 HOH HOH . I 6 HOH A 46 546 544 HOH HOH . I 6 HOH A 47 547 562 HOH HOH . I 6 HOH A 48 548 555 HOH HOH . I 6 HOH A 49 549 546 HOH HOH . I 6 HOH A 50 550 537 HOH HOH . I 6 HOH A 51 551 768 HOH HOH . I 6 HOH A 52 552 575 HOH HOH . I 6 HOH A 53 553 566 HOH HOH . I 6 HOH A 54 554 550 HOH HOH . I 6 HOH A 55 555 553 HOH HOH . I 6 HOH A 56 556 556 HOH HOH . I 6 HOH A 57 557 563 HOH HOH . I 6 HOH A 58 558 564 HOH HOH . I 6 HOH A 59 559 587 HOH HOH . I 6 HOH A 60 560 567 HOH HOH . I 6 HOH A 61 561 554 HOH HOH . I 6 HOH A 62 562 565 HOH HOH . I 6 HOH A 63 563 561 HOH HOH . I 6 HOH A 64 564 573 HOH HOH . I 6 HOH A 65 565 572 HOH HOH . I 6 HOH A 66 566 559 HOH HOH . I 6 HOH A 67 567 568 HOH HOH . I 6 HOH A 68 568 578 HOH HOH . I 6 HOH A 69 569 576 HOH HOH . I 6 HOH A 70 570 592 HOH HOH . I 6 HOH A 71 571 583 HOH HOH . I 6 HOH A 72 572 634 HOH HOH . I 6 HOH A 73 573 596 HOH HOH . I 6 HOH A 74 574 574 HOH HOH . I 6 HOH A 75 575 580 HOH HOH . I 6 HOH A 76 576 591 HOH HOH . I 6 HOH A 77 577 584 HOH HOH . I 6 HOH A 78 578 590 HOH HOH . I 6 HOH A 79 579 586 HOH HOH . I 6 HOH A 80 580 593 HOH HOH . I 6 HOH A 81 581 588 HOH HOH . I 6 HOH A 82 582 589 HOH HOH . I 6 HOH A 83 583 610 HOH HOH . I 6 HOH A 84 584 605 HOH HOH . I 6 HOH A 85 585 582 HOH HOH . I 6 HOH A 86 586 599 HOH HOH . I 6 HOH A 87 587 570 HOH HOH . I 6 HOH A 88 588 600 HOH HOH . I 6 HOH A 89 589 750 HOH HOH . I 6 HOH A 90 590 594 HOH HOH . I 6 HOH A 91 591 602 HOH HOH . I 6 HOH A 92 592 621 HOH HOH . I 6 HOH A 93 593 598 HOH HOH . I 6 HOH A 94 594 608 HOH HOH . I 6 HOH A 95 595 603 HOH HOH . I 6 HOH A 96 596 604 HOH HOH . I 6 HOH A 97 597 597 HOH HOH . I 6 HOH A 98 598 601 HOH HOH . I 6 HOH A 99 599 628 HOH HOH . I 6 HOH A 100 600 607 HOH HOH . I 6 HOH A 101 601 609 HOH HOH . I 6 HOH A 102 602 614 HOH HOH . I 6 HOH A 103 603 620 HOH HOH . I 6 HOH A 104 604 630 HOH HOH . I 6 HOH A 105 605 615 HOH HOH . I 6 HOH A 106 606 611 HOH HOH . I 6 HOH A 107 607 624 HOH HOH . I 6 HOH A 108 608 612 HOH HOH . I 6 HOH A 109 609 625 HOH HOH . I 6 HOH A 110 610 619 HOH HOH . I 6 HOH A 111 611 623 HOH HOH . I 6 HOH A 112 612 617 HOH HOH . I 6 HOH A 113 613 631 HOH HOH . I 6 HOH A 114 614 618 HOH HOH . I 6 HOH A 115 615 626 HOH HOH . I 6 HOH A 116 616 622 HOH HOH . I 6 HOH A 117 617 656 HOH HOH . I 6 HOH A 118 618 616 HOH HOH . I 6 HOH A 119 619 642 HOH HOH . I 6 HOH A 120 620 627 HOH HOH . I 6 HOH A 121 621 636 HOH HOH . I 6 HOH A 122 622 629 HOH HOH . I 6 HOH A 123 623 643 HOH HOH . I 6 HOH A 124 624 632 HOH HOH . I 6 HOH A 125 625 635 HOH HOH . I 6 HOH A 126 626 761 HOH HOH . I 6 HOH A 127 627 633 HOH HOH . I 6 HOH A 128 628 501 HOH HOH . I 6 HOH A 129 629 649 HOH HOH . I 6 HOH A 130 630 638 HOH HOH . I 6 HOH A 131 631 639 HOH HOH . I 6 HOH A 132 632 657 HOH HOH . I 6 HOH A 133 633 767 HOH HOH . I 6 HOH A 134 634 640 HOH HOH . I 6 HOH A 135 635 637 HOH HOH . I 6 HOH A 136 636 747 HOH HOH . I 6 HOH A 137 637 644 HOH HOH . I 6 HOH A 138 638 648 HOH HOH . I 6 HOH A 139 639 653 HOH HOH . I 6 HOH A 140 640 651 HOH HOH . I 6 HOH A 141 641 666 HOH HOH . I 6 HOH A 142 642 641 HOH HOH . I 6 HOH A 143 643 655 HOH HOH . I 6 HOH A 144 644 654 HOH HOH . I 6 HOH A 145 645 650 HOH HOH . I 6 HOH A 146 646 551 HOH HOH . I 6 HOH A 147 647 663 HOH HOH . I 6 HOH A 148 648 668 HOH HOH . I 6 HOH A 149 649 749 HOH HOH . I 6 HOH A 150 650 660 HOH HOH . I 6 HOH A 151 651 652 HOH HOH . I 6 HOH A 152 652 683 HOH HOH . I 6 HOH A 153 653 659 HOH HOH . I 6 HOH A 154 654 672 HOH HOH . I 6 HOH A 155 655 665 HOH HOH . I 6 HOH A 156 656 658 HOH HOH . I 6 HOH A 157 657 679 HOH HOH . I 6 HOH A 158 658 661 HOH HOH . I 6 HOH A 159 659 669 HOH HOH . I 6 HOH A 160 660 645 HOH HOH . I 6 HOH A 161 661 689 HOH HOH . I 6 HOH A 162 662 681 HOH HOH . I 6 HOH A 163 663 670 HOH HOH . I 6 HOH A 164 664 684 HOH HOH . I 6 HOH A 165 665 675 HOH HOH . I 6 HOH A 166 666 674 HOH HOH . I 6 HOH A 167 667 671 HOH HOH . I 6 HOH A 168 668 676 HOH HOH . I 6 HOH A 169 669 677 HOH HOH . I 6 HOH A 170 670 678 HOH HOH . I 6 HOH A 171 671 673 HOH HOH . I 6 HOH A 172 672 687 HOH HOH . I 6 HOH A 173 673 682 HOH HOH . I 6 HOH A 174 674 685 HOH HOH . I 6 HOH A 175 675 680 HOH HOH . I 6 HOH A 176 676 688 HOH HOH . I 6 HOH A 177 677 691 HOH HOH . I 6 HOH A 178 678 693 HOH HOH . I 6 HOH A 179 679 585 HOH HOH . I 6 HOH A 180 680 692 HOH HOH . I 6 HOH A 181 681 694 HOH HOH . I 6 HOH A 182 682 698 HOH HOH . I 6 HOH A 183 683 699 HOH HOH . I 6 HOH A 184 684 700 HOH HOH . I 6 HOH A 185 685 703 HOH HOH . I 6 HOH A 186 686 695 HOH HOH . I 6 HOH A 187 687 701 HOH HOH . I 6 HOH A 188 688 702 HOH HOH . I 6 HOH A 189 689 752 HOH HOH . I 6 HOH A 190 690 704 HOH HOH . I 6 HOH A 191 691 697 HOH HOH . I 6 HOH A 192 692 706 HOH HOH . I 6 HOH A 193 693 709 HOH HOH . I 6 HOH A 194 694 746 HOH HOH . I 6 HOH A 195 695 711 HOH HOH . I 6 HOH A 196 696 751 HOH HOH . I 6 HOH A 197 697 712 HOH HOH . I 6 HOH A 198 698 715 HOH HOH . I 6 HOH A 199 699 522 HOH HOH . I 6 HOH A 200 700 713 HOH HOH . I 6 HOH A 201 701 716 HOH HOH . I 6 HOH A 202 702 717 HOH HOH . I 6 HOH A 203 703 722 HOH HOH . I 6 HOH A 204 704 721 HOH HOH . I 6 HOH A 205 705 720 HOH HOH . I 6 HOH A 206 706 723 HOH HOH . I 6 HOH A 207 707 725 HOH HOH . I 6 HOH A 208 708 724 HOH HOH . I 6 HOH A 209 709 728 HOH HOH . I 6 HOH A 210 710 727 HOH HOH . I 6 HOH A 211 711 745 HOH HOH . I 6 HOH A 212 712 748 HOH HOH . I 6 HOH A 213 713 729 HOH HOH . I 6 HOH A 214 714 734 HOH HOH . I 6 HOH A 215 715 502 HOH HOH . I 6 HOH A 216 716 733 HOH HOH . I 6 HOH A 217 717 731 HOH HOH . I 6 HOH A 218 718 765 HOH HOH . I 6 HOH A 219 719 737 HOH HOH . I 6 HOH A 220 720 736 HOH HOH . I 6 HOH A 221 721 738 HOH HOH . I 6 HOH A 222 722 740 HOH HOH . I 6 HOH A 223 723 739 HOH HOH . I 6 HOH A 224 724 764 HOH HOH . I 6 HOH A 225 725 743 HOH HOH . J 6 HOH B 1 101 101 HOH HOH . J 6 HOH B 2 102 517 HOH HOH . J 6 HOH B 3 103 105 HOH HOH . J 6 HOH B 4 104 103 HOH HOH . J 6 HOH B 5 105 102 HOH HOH . J 6 HOH B 6 106 527 HOH HOH . J 6 HOH B 7 107 106 HOH HOH . J 6 HOH B 8 108 109 HOH HOH . J 6 HOH B 9 109 112 HOH HOH . J 6 HOH B 10 110 111 HOH HOH . J 6 HOH B 11 111 110 HOH HOH . J 6 HOH B 12 112 115 HOH HOH . J 6 HOH B 13 113 113 HOH HOH . J 6 HOH B 14 114 117 HOH HOH . J 6 HOH B 15 115 107 HOH HOH . J 6 HOH B 16 116 114 HOH HOH . J 6 HOH B 17 117 116 HOH HOH . J 6 HOH B 18 118 108 HOH HOH . J 6 HOH B 19 119 118 HOH HOH . J 6 HOH B 20 120 122 HOH HOH . J 6 HOH B 21 121 125 HOH HOH . J 6 HOH B 22 122 123 HOH HOH . J 6 HOH B 23 123 119 HOH HOH . J 6 HOH B 24 124 124 HOH HOH . J 6 HOH B 25 125 120 HOH HOH . J 6 HOH B 26 126 126 HOH HOH . J 6 HOH B 27 127 127 HOH HOH . J 6 HOH B 28 128 128 HOH HOH . J 6 HOH B 29 129 129 HOH HOH . J 6 HOH B 30 130 506 HOH HOH . J 6 HOH B 31 131 130 HOH HOH . J 6 HOH B 32 132 132 HOH HOH . J 6 HOH B 33 133 133 HOH HOH . J 6 HOH B 34 134 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -16.224 _atom_site.Cartn_y -12.844 _atom_site.Cartn_z 18.492 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #