data_6XLZ
#
_model_server_result.job_id            ebrqrDTEYZDVyZzOt5xClw 
_model_server_result.datetime_utc      '2025-08-31 13:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xlz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    6XLZ 
#
_exptl.entry_id    6XLZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XLZ 
_cell.length_a            130.393 
_cell.length_b            130.393 
_cell.length_c            170.898 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XLZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 M N N 
? 4 N N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 100 H CYS 97 1_555 B SG CYS 105 H CYS 100 1_555 ? ? ? B ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 B SG CYS 146 H CYS 146 1_555 B SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 C SG CYS 22 L CYS 23 1_555 C SG CYS 91 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 C SG CYS 139 L CYS 140 1_555 C SG CYS 198 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 70 n n 
O6 HO6 BU3 sing 71 n n 
C3 C4 BU3 sing 72 n n 
C3 C2 BU3 sing 73 n n 
C3 H3 BU3 sing 74 n n 
C4 H41 BU3 sing 75 n n 
C4 H42 BU3 sing 76 n n 
C4 H43 BU3 sing 77 n n 
C2 O5 BU3 sing 78 n n 
C2 C1 BU3 sing 79 n n 
C2 H2 BU3 sing 80 n n 
O5 HO5 BU3 sing 81 n n 
C1 H11 BU3 sing 82 n n 
C1 H12 BU3 sing 83 n n 
C1 H13 BU3 sing 84 n n 
#
_atom_sites.entry_id                     6XLZ 
_atom_sites.fract_transf_matrix[1][1]    0.007669 
_atom_sites.fract_transf_matrix[1][2]    0.004428 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008856 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 BU3 H 1 301 402 BU3 BU3 . 
F 4 BU3 H 1 302 602 BU3 BU3 . 
G 4 BU3 H 1 303 802 BU3 BU3 . 
H 5 SO4 H 1 304 1 SO4 SO4 . 
I 5 SO4 H 1 305 3 SO4 SO4 . 
J 5 SO4 H 1 306 4 SO4 SO4 . 
K 5 SO4 H 1 307 10 SO4 SO4 . 
L 5 SO4 H 1 308 12 SO4 SO4 . 
M 4 BU3 H 1 309 901 BU3 BU3 . 
N 4 BU3 L 1 301 302 BU3 BU3 . 
O 5 SO4 L 1 302 5 SO4 SO4 . 
P 5 SO4 L 1 303 6 SO4 SO4 . 
Q 5 SO4 L 1 304 11 SO4 SO4 . 
R 4 BU3 L 1 305 301 BU3 BU3 . 
S 4 BU3 L 1 306 601 BU3 BU3 . 
T 6 HOH P 1 201 62 HOH HOH . 
T 6 HOH P 2 202 93 HOH HOH . 
T 6 HOH P 3 203 117 HOH HOH . 
T 6 HOH P 4 204 91 HOH HOH . 
T 6 HOH P 5 205 50 HOH HOH . 
T 6 HOH P 6 206 35 HOH HOH . 
T 6 HOH P 7 207 115 HOH HOH . 
T 6 HOH P 8 208 106 HOH HOH . 
T 6 HOH P 9 209 123 HOH HOH . 
T 6 HOH P 10 210 75 HOH HOH . 
U 6 HOH H 1 401 101 HOH HOH . 
U 6 HOH H 2 402 119 HOH HOH . 
U 6 HOH H 3 403 105 HOH HOH . 
U 6 HOH H 4 404 97 HOH HOH . 
U 6 HOH H 5 405 46 HOH HOH . 
U 6 HOH H 6 406 80 HOH HOH . 
U 6 HOH H 7 407 120 HOH HOH . 
U 6 HOH H 8 408 118 HOH HOH . 
U 6 HOH H 9 409 52 HOH HOH . 
U 6 HOH H 10 410 64 HOH HOH . 
U 6 HOH H 11 411 38 HOH HOH . 
U 6 HOH H 12 412 47 HOH HOH . 
U 6 HOH H 13 413 28 HOH HOH . 
U 6 HOH H 14 414 95 HOH HOH . 
U 6 HOH H 15 415 113 HOH HOH . 
U 6 HOH H 16 416 116 HOH HOH . 
U 6 HOH H 17 417 67 HOH HOH . 
U 6 HOH H 18 418 27 HOH HOH . 
U 6 HOH H 19 419 42 HOH HOH . 
U 6 HOH H 20 420 25 HOH HOH . 
U 6 HOH H 21 421 71 HOH HOH . 
U 6 HOH H 22 422 79 HOH HOH . 
U 6 HOH H 23 423 9 HOH HOH . 
U 6 HOH H 24 424 72 HOH HOH . 
U 6 HOH H 25 425 12 HOH HOH . 
U 6 HOH H 26 426 32 HOH HOH . 
U 6 HOH H 27 427 63 HOH HOH . 
U 6 HOH H 28 428 10 HOH HOH . 
U 6 HOH H 29 429 68 HOH HOH . 
U 6 HOH H 30 430 54 HOH HOH . 
U 6 HOH H 31 431 65 HOH HOH . 
U 6 HOH H 32 432 74 HOH HOH . 
U 6 HOH H 33 433 107 HOH HOH . 
U 6 HOH H 34 434 4 HOH HOH . 
U 6 HOH H 35 435 18 HOH HOH . 
U 6 HOH H 36 436 88 HOH HOH . 
U 6 HOH H 37 437 5 HOH HOH . 
U 6 HOH H 38 438 73 HOH HOH . 
U 6 HOH H 39 439 82 HOH HOH . 
V 6 HOH L 1 401 102 HOH HOH . 
V 6 HOH L 2 402 110 HOH HOH . 
V 6 HOH L 3 403 36 HOH HOH . 
V 6 HOH L 4 404 108 HOH HOH . 
V 6 HOH L 5 405 39 HOH HOH . 
V 6 HOH L 6 406 53 HOH HOH . 
V 6 HOH L 7 407 57 HOH HOH . 
V 6 HOH L 8 408 33 HOH HOH . 
V 6 HOH L 9 409 111 HOH HOH . 
V 6 HOH L 10 410 85 HOH HOH . 
V 6 HOH L 11 411 23 HOH HOH . 
V 6 HOH L 12 412 112 HOH HOH . 
V 6 HOH L 13 413 69 HOH HOH . 
V 6 HOH L 14 414 40 HOH HOH . 
V 6 HOH L 15 415 92 HOH HOH . 
V 6 HOH L 16 416 41 HOH HOH . 
V 6 HOH L 17 417 109 HOH HOH . 
V 6 HOH L 18 418 104 HOH HOH . 
V 6 HOH L 19 419 114 HOH HOH . 
V 6 HOH L 20 420 8 HOH HOH . 
V 6 HOH L 21 421 43 HOH HOH . 
V 6 HOH L 22 422 121 HOH HOH . 
V 6 HOH L 23 423 56 HOH HOH . 
V 6 HOH L 24 424 66 HOH HOH . 
V 6 HOH L 25 425 122 HOH HOH . 
V 6 HOH L 26 426 22 HOH HOH . 
V 6 HOH L 27 427 44 HOH HOH . 
V 6 HOH L 28 428 89 HOH HOH . 
V 6 HOH L 29 429 21 HOH HOH . 
V 6 HOH L 30 430 20 HOH HOH . 
V 6 HOH L 31 431 77 HOH HOH . 
V 6 HOH L 32 432 48 HOH HOH . 
V 6 HOH L 33 433 58 HOH HOH . 
V 6 HOH L 34 434 55 HOH HOH . 
V 6 HOH L 35 435 87 HOH HOH . 
V 6 HOH L 36 436 31 HOH HOH . 
V 6 HOH L 37 437 59 HOH HOH . 
V 6 HOH L 38 438 17 HOH HOH . 
V 6 HOH L 39 439 76 HOH HOH . 
V 6 HOH L 40 440 83 HOH HOH . 
V 6 HOH L 41 441 60 HOH HOH . 
V 6 HOH L 42 442 84 HOH HOH . 
V 6 HOH L 43 443 19 HOH HOH . 
V 6 HOH L 44 444 1 HOH HOH . 
V 6 HOH L 45 445 100 HOH HOH . 
V 6 HOH L 46 446 49 HOH HOH . 
V 6 HOH L 47 447 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . N 4 -8.809 36.561 6.551 1 79.3 ? O6 BU3 301 L 1 
HETATM 2 C C3 BU3 . . . N 4 -9.078 36.82 5.206 1 78.94 ? C3 BU3 301 L 1 
HETATM 3 C C4 BU3 . . . N 4 -9.182 35.503 4.434 1 61.89 ? C4 BU3 301 L 1 
HETATM 4 C C2 BU3 . . . N 4 -7.958 37.665 4.593 1 74.92 ? C2 BU3 301 L 1 
HETATM 5 O O5 BU3 . . . N 4 -6.707 37.141 4.933 1 70.17 ? O5 BU3 301 L 1 
HETATM 6 C C1 BU3 . . . N 4 -8.084 39.09 5.127 1 61.88 ? C1 BU3 301 L 1 
HETATM 7 H HO6 BU3 . . . N 4 -8.514 35.769 6.626 1 95.45 ? HO6 BU3 301 L 1 
HETATM 8 H H3 BU3 . . . N 4 -9.918 37.303 5.149 1 95.02 ? H3 BU3 301 L 1 
HETATM 9 H H41 BU3 . . . N 4 -9.866 34.945 4.836 1 74.57 ? H41 BU3 301 L 1 
HETATM 10 H H42 BU3 . . . N 4 -8.329 35.042 4.464 1 74.57 ? H42 BU3 301 L 1 
HETATM 11 H H43 BU3 . . . N 4 -9.417 35.688 3.511 1 74.57 ? H43 BU3 301 L 1 
HETATM 12 H H2 BU3 . . . N 4 -8.037 37.659 3.627 1 90.2 ? H2 BU3 301 L 1 
HETATM 13 H HO5 BU3 . . . N 4 -6.698 36.951 5.759 1 84.5 ? HO5 BU3 301 L 1 
HETATM 14 H H11 BU3 . . . N 4 -7.374 39.637 4.757 1 74.55 ? H11 BU3 301 L 1 
HETATM 15 H H12 BU3 . . . N 4 -8.016 39.08 6.094 1 74.55 ? H12 BU3 301 L 1 
HETATM 16 H H13 BU3 . . . N 4 -8.944 39.457 4.867 1 74.55 ? H13 BU3 301 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#