data_6XMC # _model_server_result.job_id BUCuTkMN-sLrqJHmjVQfRA _model_server_result.datetime_utc '2024-11-22 21:15:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6XMC # _exptl.entry_id 6XMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.447 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-({3-[2-(6-aminopyridin-2-yl)ethyl]phenoxy}methyl)quinolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XMC _cell.length_a 80.887 _cell.length_b 94.82 _cell.length_c 61.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.51 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H22 N4 O' _chem_comp.formula_weight 370.447 _chem_comp.id V5G _chem_comp.mon_nstd_flag . _chem_comp.name 7-({3-[2-(6-aminopyridin-2-yl)ethyl]phenoxy}methyl)quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C05 V5G doub 464 n y C04 C03 V5G sing 465 n y C17 C18 V5G doub 466 n y C17 C16 V5G sing 467 n y C05 C06 V5G sing 468 n y C03 C02 V5G doub 469 n y C18 C19 V5G sing 470 n y C06 C07 V5G sing 471 n n C06 N28 V5G doub 472 n y C07 C08 V5G sing 473 n n C02 N28 V5G sing 474 n y C02 N01 V5G sing 475 n n C15 C16 V5G sing 476 n n C15 O14 V5G sing 477 n n C16 C26 V5G doub 478 n y C12 C11 V5G doub 479 n y C12 C13 V5G sing 480 n y C11 C10 V5G sing 481 n y O14 C13 V5G sing 482 n n C13 C27 V5G doub 483 n y C10 C09 V5G doub 484 n y C27 C09 V5G sing 485 n y C09 C08 V5G sing 486 n n C19 C20 V5G doub 487 n y C19 C25 V5G sing 488 n y C20 C21 V5G sing 489 n y C26 C25 V5G sing 490 n y C25 N24 V5G doub 491 n y C21 C22 V5G doub 492 n y N24 C22 V5G sing 493 n y C22 N23 V5G sing 494 n n C03 H1 V5G sing 495 n n C04 H2 V5G sing 496 n n C05 H3 V5G sing 497 n n C07 H4 V5G sing 498 n n C07 H5 V5G sing 499 n n C08 H6 V5G sing 500 n n C08 H7 V5G sing 501 n n C10 H8 V5G sing 502 n n C11 H9 V5G sing 503 n n C12 H10 V5G sing 504 n n C15 H11 V5G sing 505 n n C15 H12 V5G sing 506 n n C17 H13 V5G sing 507 n n C18 H14 V5G sing 508 n n C20 H15 V5G sing 509 n n C21 H16 V5G sing 510 n n C26 H17 V5G sing 511 n n C27 H18 V5G sing 512 n n N01 H19 V5G sing 513 n n N01 H20 V5G sing 514 n n N23 H21 V5G sing 515 n n N23 H22 V5G sing 516 n n # _atom_sites.entry_id 6XMC _atom_sites.fract_transf_matrix[1][1] 0.012363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 V5G A 1 902 1 V5G PWA . D 4 CL A 1 903 1 CL CL . E 5 GOL A 1 904 1 GOL GOL . F 5 GOL A 1 905 2 GOL GOL . G 5 GOL A 1 906 3 GOL GOL . H 6 POL A 1 907 1 POL POL . I 7 HOH A 1 1001 71 HOH HOH . I 7 HOH A 2 1002 110 HOH HOH . I 7 HOH A 3 1003 88 HOH HOH . I 7 HOH A 4 1004 14 HOH HOH . I 7 HOH A 5 1005 46 HOH HOH . I 7 HOH A 6 1006 84 HOH HOH . I 7 HOH A 7 1007 47 HOH HOH . I 7 HOH A 8 1008 35 HOH HOH . I 7 HOH A 9 1009 52 HOH HOH . I 7 HOH A 10 1010 28 HOH HOH . I 7 HOH A 11 1011 8 HOH HOH . I 7 HOH A 12 1012 38 HOH HOH . I 7 HOH A 13 1013 112 HOH HOH . I 7 HOH A 14 1014 55 HOH HOH . I 7 HOH A 15 1015 81 HOH HOH . I 7 HOH A 16 1016 57 HOH HOH . I 7 HOH A 17 1017 1 HOH HOH . I 7 HOH A 18 1018 6 HOH HOH . I 7 HOH A 19 1019 11 HOH HOH . I 7 HOH A 20 1020 83 HOH HOH . I 7 HOH A 21 1021 107 HOH HOH . I 7 HOH A 22 1022 93 HOH HOH . I 7 HOH A 23 1023 13 HOH HOH . I 7 HOH A 24 1024 102 HOH HOH . I 7 HOH A 25 1025 61 HOH HOH . I 7 HOH A 26 1026 108 HOH HOH . I 7 HOH A 27 1027 92 HOH HOH . I 7 HOH A 28 1028 79 HOH HOH . I 7 HOH A 29 1029 70 HOH HOH . I 7 HOH A 30 1030 50 HOH HOH . I 7 HOH A 31 1031 96 HOH HOH . I 7 HOH A 32 1032 68 HOH HOH . I 7 HOH A 33 1033 72 HOH HOH . I 7 HOH A 34 1034 5 HOH HOH . I 7 HOH A 35 1035 109 HOH HOH . I 7 HOH A 36 1036 104 HOH HOH . I 7 HOH A 37 1037 10 HOH HOH . I 7 HOH A 38 1038 49 HOH HOH . I 7 HOH A 39 1039 2 HOH HOH . I 7 HOH A 40 1040 65 HOH HOH . I 7 HOH A 41 1041 19 HOH HOH . I 7 HOH A 42 1042 34 HOH HOH . I 7 HOH A 43 1043 73 HOH HOH . I 7 HOH A 44 1044 31 HOH HOH . I 7 HOH A 45 1045 100 HOH HOH . I 7 HOH A 46 1046 48 HOH HOH . I 7 HOH A 47 1047 32 HOH HOH . I 7 HOH A 48 1048 82 HOH HOH . I 7 HOH A 49 1049 3 HOH HOH . I 7 HOH A 50 1050 58 HOH HOH . I 7 HOH A 51 1051 26 HOH HOH . I 7 HOH A 52 1052 103 HOH HOH . I 7 HOH A 53 1053 22 HOH HOH . I 7 HOH A 54 1054 18 HOH HOH . I 7 HOH A 55 1055 17 HOH HOH . I 7 HOH A 56 1056 64 HOH HOH . I 7 HOH A 57 1057 24 HOH HOH . I 7 HOH A 58 1058 15 HOH HOH . I 7 HOH A 59 1059 95 HOH HOH . I 7 HOH A 60 1060 97 HOH HOH . I 7 HOH A 61 1061 23 HOH HOH . I 7 HOH A 62 1062 9 HOH HOH . I 7 HOH A 63 1063 78 HOH HOH . I 7 HOH A 64 1064 36 HOH HOH . I 7 HOH A 65 1065 37 HOH HOH . I 7 HOH A 66 1066 53 HOH HOH . I 7 HOH A 67 1067 40 HOH HOH . I 7 HOH A 68 1068 30 HOH HOH . I 7 HOH A 69 1069 29 HOH HOH . I 7 HOH A 70 1070 44 HOH HOH . I 7 HOH A 71 1071 67 HOH HOH . I 7 HOH A 72 1072 77 HOH HOH . I 7 HOH A 73 1073 16 HOH HOH . I 7 HOH A 74 1074 76 HOH HOH . I 7 HOH A 75 1075 4 HOH HOH . I 7 HOH A 76 1076 106 HOH HOH . I 7 HOH A 77 1077 33 HOH HOH . I 7 HOH A 78 1078 7 HOH HOH . I 7 HOH A 79 1079 114 HOH HOH . I 7 HOH A 80 1080 86 HOH HOH . I 7 HOH A 81 1081 66 HOH HOH . I 7 HOH A 82 1082 56 HOH HOH . I 7 HOH A 83 1083 41 HOH HOH . I 7 HOH A 84 1084 75 HOH HOH . I 7 HOH A 85 1085 99 HOH HOH . I 7 HOH A 86 1086 39 HOH HOH . I 7 HOH A 87 1087 98 HOH HOH . I 7 HOH A 88 1088 63 HOH HOH . I 7 HOH A 89 1089 59 HOH HOH . I 7 HOH A 90 1090 42 HOH HOH . I 7 HOH A 91 1091 21 HOH HOH . I 7 HOH A 92 1092 105 HOH HOH . I 7 HOH A 93 1093 74 HOH HOH . I 7 HOH A 94 1094 25 HOH HOH . I 7 HOH A 95 1095 101 HOH HOH . I 7 HOH A 96 1096 80 HOH HOH . I 7 HOH A 97 1097 60 HOH HOH . I 7 HOH A 98 1098 27 HOH HOH . I 7 HOH A 99 1099 111 HOH HOH . I 7 HOH A 100 1100 87 HOH HOH . I 7 HOH A 101 1101 62 HOH HOH . I 7 HOH A 102 1102 43 HOH HOH . I 7 HOH A 103 1103 91 HOH HOH . I 7 HOH A 104 1104 51 HOH HOH . I 7 HOH A 105 1105 113 HOH HOH . I 7 HOH A 106 1106 89 HOH HOH . I 7 HOH A 107 1107 45 HOH HOH . I 7 HOH A 108 1108 94 HOH HOH . I 7 HOH A 109 1109 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 V5G . . . C 3 7.032 4.617 21.629 1 37.81 ? C02 V5G 902 A 1 HETATM 2 C C03 V5G . . . C 3 5.789 4.098 21.344 1 34.61 ? C03 V5G 902 A 1 HETATM 3 C C04 V5G . . . C 3 4.739 4.971 21.137 1 34.87 ? C04 V5G 902 A 1 HETATM 4 C C05 V5G . . . C 3 4.996 6.364 21.229 1 38.01 ? C05 V5G 902 A 1 HETATM 5 C C06 V5G . . . C 3 6.275 6.803 21.517 1 36.46 ? C06 V5G 902 A 1 HETATM 6 C C07 V5G . . . C 3 6.574 8.328 21.615 1 36.49 ? C07 V5G 902 A 1 HETATM 7 C C08 V5G . . . C 3 7.353 8.711 22.87 1 37.17 ? C08 V5G 902 A 1 HETATM 8 C C09 V5G . . . C 3 7.755 10.172 22.722 1 42.75 ? C09 V5G 902 A 1 HETATM 9 C C10 V5G . . . C 3 9.092 10.52 22.583 1 40.72 ? C10 V5G 902 A 1 HETATM 10 C C11 V5G . . . C 3 9.499 11.856 22.451 1 47.01 ? C11 V5G 902 A 1 HETATM 11 C C12 V5G . . . C 3 8.519 12.843 22.438 1 41.06 ? C12 V5G 902 A 1 HETATM 12 C C13 V5G . . . C 3 7.178 12.49 22.565 1 47.08 ? C13 V5G 902 A 1 HETATM 13 C C15 V5G . . . C 3 6.567 14.657 21.802 1 41.52 ? C15 V5G 902 A 1 HETATM 14 C C16 V5G . . . C 3 5.469 15.699 22.115 1 38.76 ? C16 V5G 902 A 1 HETATM 15 C C17 V5G . . . C 3 5.077 16.642 21.173 1 37.25 ? C17 V5G 902 A 1 HETATM 16 C C18 V5G . . . C 3 4.079 17.566 21.506 1 37.8 ? C18 V5G 902 A 1 HETATM 17 C C19 V5G . . . C 3 3.486 17.57 22.807 1 36.86 ? C19 V5G 902 A 1 HETATM 18 C C20 V5G . . . C 3 2.472 18.537 23.135 1 34.77 ? C20 V5G 902 A 1 HETATM 19 C C21 V5G . . . C 3 1.948 18.47 24.43 1 35.29 ? C21 V5G 902 A 1 HETATM 20 C C22 V5G . . . C 3 2.351 17.467 25.332 1 34.58 ? C22 V5G 902 A 1 HETATM 21 C C25 V5G . . . C 3 3.849 16.629 23.724 1 35.33 ? C25 V5G 902 A 1 HETATM 22 C C26 V5G . . . C 3 4.889 15.697 23.382 1 36.42 ? C26 V5G 902 A 1 HETATM 23 C C27 V5G . . . C 3 6.761 11.15 22.703 1 41.32 ? C27 V5G 902 A 1 HETATM 24 N N01 V5G . . . C 3 8.155 3.718 21.836 1 37.7 ? N01 V5G 902 A 1 HETATM 25 N N23 V5G . . . C 3 1.823 17.401 26.69 1 30.43 ? N23 V5G 902 A 1 HETATM 26 N N24 V5G . . . C 3 3.267 16.565 24.978 1 31.72 ? N24 V5G 902 A 1 HETATM 27 N N28 V5G . . . C 3 7.236 5.931 21.71 1 38.59 ? N28 V5G 902 A 1 HETATM 28 O O14 V5G . . . C 3 6.223 13.51 22.553 1 43.96 ? O14 V5G 902 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #