data_6XMH # _model_server_result.job_id fTp61yzJW1W_7mUkPyrqkw _model_server_result.datetime_utc '2025-01-11 05:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6XMH # _exptl.entry_id 6XMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XMH _cell.length_a 161.885 _cell.length_b 161.885 _cell.length_c 168.128 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -80.9425 -140.196522 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6XMH _atom_sites.fract_transf_matrix[1][1] 0.006177 _atom_sites.fract_transf_matrix[1][2] 0.003566 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 401 370 PO4 PO4 . D 2 PO4 A 1 402 371 PO4 PO4 . E 3 GOL A 1 403 375 GOL GOL . F 3 GOL A 1 404 376 GOL GOL . G 3 GOL A 1 405 377 GOL GOL . H 3 GOL A 1 406 378 GOL GOL . I 3 GOL A 1 407 379 GOL GOL . J 2 PO4 A 1 408 371 PO4 PO4 . K 3 GOL A 1 409 376 GOL GOL . L 2 PO4 B 1 401 370 PO4 PO4 . M 3 GOL B 1 402 375 GOL GOL . N 4 HOH A 1 501 129 HOH HOH . N 4 HOH A 2 502 22 HOH HOH . N 4 HOH A 3 503 153 HOH HOH . N 4 HOH A 4 504 11 HOH HOH . N 4 HOH A 5 505 195 HOH HOH . N 4 HOH A 6 506 18 HOH HOH . N 4 HOH A 7 507 205 HOH HOH . N 4 HOH A 8 508 91 HOH HOH . N 4 HOH A 9 509 159 HOH HOH . N 4 HOH A 10 510 44 HOH HOH . N 4 HOH A 11 511 75 HOH HOH . N 4 HOH A 12 512 61 HOH HOH . N 4 HOH A 13 513 95 HOH HOH . N 4 HOH A 14 514 1 HOH HOH . N 4 HOH A 15 515 19 HOH HOH . N 4 HOH A 16 516 198 HOH HOH . N 4 HOH A 17 517 10 HOH HOH . N 4 HOH A 18 518 65 HOH HOH . N 4 HOH A 19 519 168 HOH HOH . N 4 HOH A 20 520 42 HOH HOH . N 4 HOH A 21 521 84 HOH HOH . N 4 HOH A 22 522 130 HOH HOH . N 4 HOH A 23 523 136 HOH HOH . N 4 HOH A 24 524 81 HOH HOH . N 4 HOH A 25 525 2 HOH HOH . N 4 HOH A 26 526 49 HOH HOH . N 4 HOH A 27 527 51 HOH HOH . N 4 HOH A 28 528 28 HOH HOH . N 4 HOH A 29 529 96 HOH HOH . N 4 HOH A 30 530 115 HOH HOH . N 4 HOH A 31 531 165 HOH HOH . N 4 HOH A 32 532 114 HOH HOH . N 4 HOH A 33 533 38 HOH HOH . N 4 HOH A 34 534 34 HOH HOH . N 4 HOH A 35 535 60 HOH HOH . N 4 HOH A 36 536 59 HOH HOH . N 4 HOH A 37 537 167 HOH HOH . N 4 HOH A 38 538 70 HOH HOH . N 4 HOH A 39 539 27 HOH HOH . N 4 HOH A 40 540 90 HOH HOH . N 4 HOH A 41 541 77 HOH HOH . N 4 HOH A 42 542 124 HOH HOH . N 4 HOH A 43 543 180 HOH HOH . N 4 HOH A 44 544 210 HOH HOH . N 4 HOH A 45 545 8 HOH HOH . N 4 HOH A 46 546 156 HOH HOH . N 4 HOH A 47 547 101 HOH HOH . N 4 HOH A 48 548 190 HOH HOH . N 4 HOH A 49 549 184 HOH HOH . N 4 HOH A 50 550 29 HOH HOH . N 4 HOH A 51 551 78 HOH HOH . N 4 HOH A 52 552 12 HOH HOH . N 4 HOH A 53 553 110 HOH HOH . N 4 HOH A 54 554 172 HOH HOH . N 4 HOH A 55 555 108 HOH HOH . N 4 HOH A 56 556 5 HOH HOH . N 4 HOH A 57 557 24 HOH HOH . N 4 HOH A 58 558 47 HOH HOH . N 4 HOH A 59 559 20 HOH HOH . N 4 HOH A 60 560 117 HOH HOH . N 4 HOH A 61 561 79 HOH HOH . N 4 HOH A 62 562 120 HOH HOH . N 4 HOH A 63 563 213 HOH HOH . N 4 HOH A 64 564 123 HOH HOH . N 4 HOH A 65 565 106 HOH HOH . N 4 HOH A 66 566 7 HOH HOH . N 4 HOH A 67 567 209 HOH HOH . N 4 HOH A 68 568 151 HOH HOH . N 4 HOH A 69 569 83 HOH HOH . N 4 HOH A 70 570 54 HOH HOH . N 4 HOH A 71 571 69 HOH HOH . N 4 HOH A 72 572 82 HOH HOH . N 4 HOH A 73 573 139 HOH HOH . N 4 HOH A 74 574 68 HOH HOH . N 4 HOH A 75 575 143 HOH HOH . N 4 HOH A 76 576 154 HOH HOH . N 4 HOH A 77 577 103 HOH HOH . N 4 HOH A 78 578 67 HOH HOH . N 4 HOH A 79 579 191 HOH HOH . N 4 HOH A 80 580 100 HOH HOH . N 4 HOH A 81 581 133 HOH HOH . N 4 HOH A 82 582 203 HOH HOH . N 4 HOH A 83 583 131 HOH HOH . N 4 HOH A 84 584 113 HOH HOH . N 4 HOH A 85 585 142 HOH HOH . N 4 HOH A 86 586 119 HOH HOH . N 4 HOH A 87 587 186 HOH HOH . N 4 HOH A 88 588 181 HOH HOH . N 4 HOH A 89 589 32 HOH HOH . N 4 HOH A 90 590 86 HOH HOH . N 4 HOH A 91 591 211 HOH HOH . N 4 HOH A 92 592 224 HOH HOH . N 4 HOH A 93 593 73 HOH HOH . N 4 HOH A 94 594 199 HOH HOH . N 4 HOH A 95 595 122 HOH HOH . N 4 HOH A 96 596 155 HOH HOH . N 4 HOH A 97 597 111 HOH HOH . N 4 HOH A 98 598 104 HOH HOH . N 4 HOH A 99 599 182 HOH HOH . N 4 HOH A 100 600 85 HOH HOH . N 4 HOH A 101 601 160 HOH HOH . N 4 HOH A 102 602 132 HOH HOH . N 4 HOH A 103 603 192 HOH HOH . N 4 HOH A 104 604 121 HOH HOH . N 4 HOH A 105 605 166 HOH HOH . N 4 HOH A 106 606 147 HOH HOH . N 4 HOH A 107 607 161 HOH HOH . N 4 HOH A 108 608 215 HOH HOH . O 4 HOH B 1 501 99 HOH HOH . O 4 HOH B 2 502 152 HOH HOH . O 4 HOH B 3 503 97 HOH HOH . O 4 HOH B 4 504 102 HOH HOH . O 4 HOH B 5 505 31 HOH HOH . O 4 HOH B 6 506 187 HOH HOH . O 4 HOH B 7 507 194 HOH HOH . O 4 HOH B 8 508 16 HOH HOH . O 4 HOH B 9 509 112 HOH HOH . O 4 HOH B 10 510 53 HOH HOH . O 4 HOH B 11 511 141 HOH HOH . O 4 HOH B 12 512 145 HOH HOH . O 4 HOH B 13 513 107 HOH HOH . O 4 HOH B 14 514 58 HOH HOH . O 4 HOH B 15 515 76 HOH HOH . O 4 HOH B 16 516 174 HOH HOH . O 4 HOH B 17 517 4 HOH HOH . O 4 HOH B 18 518 36 HOH HOH . O 4 HOH B 19 519 175 HOH HOH . O 4 HOH B 20 520 193 HOH HOH . O 4 HOH B 21 521 164 HOH HOH . O 4 HOH B 22 522 9 HOH HOH . O 4 HOH B 23 523 45 HOH HOH . O 4 HOH B 24 524 157 HOH HOH . O 4 HOH B 25 525 23 HOH HOH . O 4 HOH B 26 526 37 HOH HOH . O 4 HOH B 27 527 98 HOH HOH . O 4 HOH B 28 528 217 HOH HOH . O 4 HOH B 29 529 15 HOH HOH . O 4 HOH B 30 530 202 HOH HOH . O 4 HOH B 31 531 30 HOH HOH . O 4 HOH B 32 532 25 HOH HOH . O 4 HOH B 33 533 33 HOH HOH . O 4 HOH B 34 534 46 HOH HOH . O 4 HOH B 35 535 14 HOH HOH . O 4 HOH B 36 536 48 HOH HOH . O 4 HOH B 37 537 35 HOH HOH . O 4 HOH B 38 538 57 HOH HOH . O 4 HOH B 39 539 196 HOH HOH . O 4 HOH B 40 540 56 HOH HOH . O 4 HOH B 41 541 71 HOH HOH . O 4 HOH B 42 542 128 HOH HOH . O 4 HOH B 43 543 21 HOH HOH . O 4 HOH B 44 544 13 HOH HOH . O 4 HOH B 45 545 146 HOH HOH . O 4 HOH B 46 546 105 HOH HOH . O 4 HOH B 47 547 218 HOH HOH . O 4 HOH B 48 548 118 HOH HOH . O 4 HOH B 49 549 66 HOH HOH . O 4 HOH B 50 550 3 HOH HOH . O 4 HOH B 51 551 92 HOH HOH . O 4 HOH B 52 552 140 HOH HOH . O 4 HOH B 53 553 26 HOH HOH . O 4 HOH B 54 554 43 HOH HOH . O 4 HOH B 55 555 220 HOH HOH . O 4 HOH B 56 556 208 HOH HOH . O 4 HOH B 57 557 74 HOH HOH . O 4 HOH B 58 558 225 HOH HOH . O 4 HOH B 59 559 206 HOH HOH . O 4 HOH B 60 560 150 HOH HOH . O 4 HOH B 61 561 134 HOH HOH . O 4 HOH B 62 562 87 HOH HOH . O 4 HOH B 63 563 80 HOH HOH . O 4 HOH B 64 564 125 HOH HOH . O 4 HOH B 65 565 94 HOH HOH . O 4 HOH B 66 566 17 HOH HOH . O 4 HOH B 67 567 177 HOH HOH . O 4 HOH B 68 568 158 HOH HOH . O 4 HOH B 69 569 183 HOH HOH . O 4 HOH B 70 570 223 HOH HOH . O 4 HOH B 71 571 169 HOH HOH . O 4 HOH B 72 572 55 HOH HOH . O 4 HOH B 73 573 6 HOH HOH . O 4 HOH B 74 574 219 HOH HOH . O 4 HOH B 75 575 137 HOH HOH . O 4 HOH B 76 576 173 HOH HOH . O 4 HOH B 77 577 50 HOH HOH . O 4 HOH B 78 578 41 HOH HOH . O 4 HOH B 79 579 64 HOH HOH . O 4 HOH B 80 580 222 HOH HOH . O 4 HOH B 81 581 88 HOH HOH . O 4 HOH B 82 582 72 HOH HOH . O 4 HOH B 83 583 62 HOH HOH . O 4 HOH B 84 584 40 HOH HOH . O 4 HOH B 85 585 148 HOH HOH . O 4 HOH B 86 586 200 HOH HOH . O 4 HOH B 87 587 221 HOH HOH . O 4 HOH B 88 588 162 HOH HOH . O 4 HOH B 89 589 214 HOH HOH . O 4 HOH B 90 590 171 HOH HOH . O 4 HOH B 91 591 39 HOH HOH . O 4 HOH B 92 592 126 HOH HOH . O 4 HOH B 93 593 176 HOH HOH . O 4 HOH B 94 594 170 HOH HOH . O 4 HOH B 95 595 201 HOH HOH . O 4 HOH B 96 596 179 HOH HOH . O 4 HOH B 97 597 127 HOH HOH . O 4 HOH B 98 598 189 HOH HOH . O 4 HOH B 99 599 149 HOH HOH . O 4 HOH B 100 600 212 HOH HOH . O 4 HOH B 101 601 207 HOH HOH . O 4 HOH B 102 602 216 HOH HOH . O 4 HOH B 103 603 226 HOH HOH . O 4 HOH B 104 604 185 HOH HOH . O 4 HOH B 105 605 138 HOH HOH . O 4 HOH B 106 606 52 HOH HOH . O 4 HOH B 107 607 109 HOH HOH . O 4 HOH B 108 608 204 HOH HOH . O 4 HOH B 109 609 89 HOH HOH . O 4 HOH B 110 610 188 HOH HOH . O 4 HOH B 111 611 144 HOH HOH . O 4 HOH B 112 612 93 HOH HOH . O 4 HOH B 113 613 178 HOH HOH . O 4 HOH B 114 614 116 HOH HOH . O 4 HOH B 115 615 63 HOH HOH . O 4 HOH B 116 616 163 HOH HOH . O 4 HOH B 117 617 227 HOH HOH . O 4 HOH B 118 618 197 HOH HOH . O 4 HOH B 119 619 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -29.458 -59.24 6.131 1 56.77 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 3 -29.073 -60.519 6.675 1 59.6 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 3 -28.433 -59.032 4.919 1 64.11 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 3 -27.223 -58.46 5.33 1 72.91 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 3 -29.239 -58.233 3.882 1 50.74 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 3 -29.452 -59.068 2.764 1 49.54 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . E 3 -30.372 -59.225 5.818 1 68.47 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . E 3 -29.371 -58.523 6.778 1 68.47 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . E 3 -29.56 -60.647 7.36 1 71.87 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . E 3 -28.188 -59.894 4.547 1 77.27 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . E 3 -26.718 -58.401 4.649 1 87.84 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . E 3 -28.753 -57.421 3.668 1 61.23 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . E 3 -30.07 -57.924 4.265 1 61.23 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . E 3 -29.158 -58.648 2.086 1 59.8 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #