data_6XMX
#
_model_server_result.job_id            LgbZsEmq57aiP5DAcbFwFg 
_model_server_result.datetime_utc      '2025-04-17 11:37:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xmx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    6XMX 
#
_exptl.entry_id    6XMX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              484.978 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XMX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XMX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C24 H29 Cl N6 O3' 
_chem_comp.formula_weight    484.978 
_chem_comp.id                U52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N9 U52 sing 356 n n 
O7 C10 U52 doub 357 n n 
N9 C10 U52 sing 358 n n 
N9 C15 U52 sing 359 n n 
C10 C11 U52 sing 360 n n 
C14 C15 U52 doub 361 n y 
C14 C13 U52 sing 362 n y 
C33 C29 U52 sing 363 n n 
C15 C16 U52 sing 364 n y 
C11 O6 U52 sing 365 n n 
C11 C12 U52 doub 366 n n 
O3 C4 U52 doub 367 n n 
O6 C5 U52 sing 368 n n 
C13 C18 U52 doub 369 n y 
C16 C12 U52 sing 370 n n 
C16 C17 U52 doub 371 n y 
C29 C28 U52 sing 372 n n 
C29 C30 U52 sing 373 n n 
C4 C5 U52 sing 374 n n 
C4 N2 U52 sing 375 n n 
C28 N20 U52 sing 376 n n 
C30 C31 U52 sing 377 n n 
C18 C17 U52 sing 378 n y 
C18 N19 U52 sing 379 n n 
C1 N2 U52 sing 380 n n 
N20 C32 U52 sing 381 n n 
N20 C24 U52 sing 382 n n 
N23 C24 U52 doub 383 n y 
N23 C22 U52 sing 384 n y 
N19 C22 U52 sing 385 n n 
C31 C32 U52 sing 386 n n 
C31 C34 U52 sing 387 n n 
C24 N25 U52 sing 388 n y 
C22 C27 U52 doub 389 n y 
N25 C26 U52 doub 390 n y 
C27 C26 U52 sing 391 n y 
C27 CL1 U52 sing 392 n n 
C5 H1 U52 sing 393 n n 
C5 H2 U52 sing 394 n n 
C8 H3 U52 sing 395 n n 
C8 H4 U52 sing 396 n n 
C8 H5 U52 sing 397 n n 
C13 H6 U52 sing 398 n n 
C17 H7 U52 sing 399 n n 
C26 H8 U52 sing 400 n n 
C28 H9 U52 sing 401 n n 
C28 H10 U52 sing 402 n n 
C1 H11 U52 sing 403 n n 
C1 H12 U52 sing 404 n n 
C1 H13 U52 sing 405 n n 
N2 H14 U52 sing 406 n n 
C12 H15 U52 sing 407 n n 
C14 H16 U52 sing 408 n n 
N19 H17 U52 sing 409 n n 
C29 H18 U52 sing 410 n n 
C30 H19 U52 sing 411 n n 
C30 H20 U52 sing 412 n n 
C31 H21 U52 sing 413 n n 
C32 H22 U52 sing 414 n n 
C32 H23 U52 sing 415 n n 
C33 H24 U52 sing 416 n n 
C33 H25 U52 sing 417 n n 
C33 H26 U52 sing 418 n n 
C34 H27 U52 sing 419 n n 
C34 H28 U52 sing 420 n n 
C34 H29 U52 sing 421 n n 
#
_atom_sites.entry_id                     6XMX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 U52 A 1 401 201 U52 U52 . 
J 2 U52 B 1 401 201 U52 U52 . 
K 2 U52 C 1 401 201 U52 U52 . 
L 2 U52 D 1 401 201 U52 U52 . 
M 2 U52 E 1 401 201 U52 U52 . 
N 2 U52 F 1 401 201 U52 U52 . 
O 2 U52 G 1 401 201 U52 U52 . 
P 2 U52 H 1 401 201 U52 U52 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 U52 . . . J 2 78.56 94.568 101.317 1 19.64 ? C4 U52 401 B 1 
HETATM 2 C C5 U52 . . . J 2 77.218 95.216 101.536 1 19.64 ? C5 U52 401 B 1 
HETATM 3 C C8 U52 . . . J 2 72.254 93.719 104.387 1 19.64 ? C8 U52 401 B 1 
HETATM 4 C C10 U52 . . . J 2 74.277 93.869 102.94 1 19.64 ? C10 U52 401 B 1 
HETATM 5 C C13 U52 . . . J 2 71.064 97.528 103.039 1 19.64 ? C13 U52 401 B 1 
HETATM 6 C C15 U52 . . . J 2 72.648 95.694 103.011 1 19.64 ? C15 U52 401 B 1 
HETATM 7 C C17 U52 . . . J 2 72.965 97.671 101.674 1 19.64 ? C17 U52 401 B 1 
HETATM 8 C C22 U52 . . . J 2 70.275 99.788 100.939 1 19.64 ? C22 U52 401 B 1 
HETATM 9 C C24 U52 . . . J 2 68.309 98.933 100.042 1 19.64 ? C24 U52 401 B 1 
HETATM 10 C C26 U52 . . . J 2 68.813 101.133 99.637 1 19.64 ? C26 U52 401 B 1 
HETATM 11 C C28 U52 . . . J 2 67.112 96.866 100.88 1 19.64 ? C28 U52 401 B 1 
HETATM 12 C C1 U52 . . . J 2 80.586 94.62 99.86 1 19.64 ? C1 U52 401 B 1 
HETATM 13 N N2 U52 . . . J 2 79.276 95.091 100.254 1 19.64 ? N2 U52 401 B 1 
HETATM 14 O O3 U52 . . . J 2 79.004 93.668 102.007 1 19.64 ? O3 U52 401 B 1 
HETATM 15 O O6 U52 . . . J 2 76.209 94.21 101.468 1 19.64 ? O6 U52 401 B 1 
HETATM 16 O O7 U52 . . . J 2 74.628 92.754 103.332 1 19.64 ? O7 U52 401 B 1 
HETATM 17 N N9 U52 . . . J 2 73.074 94.445 103.425 1 19.64 ? N9 U52 401 B 1 
HETATM 18 C C11 U52 . . . J 2 75.026 94.659 101.983 1 19.64 ? C11 U52 401 B 1 
HETATM 19 C C12 U52 . . . J 2 74.594 95.857 101.608 1 19.64 ? C12 U52 401 B 1 
HETATM 20 C C14 U52 . . . J 2 71.46 96.282 103.459 1 19.64 ? C14 U52 401 B 1 
HETATM 21 C C16 U52 . . . J 2 73.396 96.418 102.098 1 19.64 ? C16 U52 401 B 1 
HETATM 22 C C18 U52 . . . J 2 71.821 98.27 102.132 1 19.64 ? C18 U52 401 B 1 
HETATM 23 N N19 U52 . . . J 2 71.381 99.543 101.681 1 19.64 ? N19 U52 401 B 1 
HETATM 24 N N20 U52 . . . J 2 67.414 97.839 99.866 1 19.64 ? N20 U52 401 B 1 
HETATM 25 CL CL1 U52 . . . J 2 70.967 102.358 100.527 1 19.64 ? CL1 U52 401 B 1 
HETATM 26 N N23 U52 . . . J 2 69.418 98.739 100.767 1 19.64 ? N23 U52 401 B 1 
HETATM 27 N N25 U52 . . . J 2 67.96 100.12 99.455 1 19.64 ? N25 U52 401 B 1 
HETATM 28 C C27 U52 . . . J 2 69.975 101.025 100.363 1 19.64 ? C27 U52 401 B 1 
HETATM 29 C C29 U52 . . . J 2 67.731 95.557 100.441 1 19.64 ? C29 U52 401 B 1 
HETATM 30 C C30 U52 . . . J 2 67.138 95.089 99.156 1 19.64 ? C30 U52 401 B 1 
HETATM 31 C C31 U52 . . . J 2 67.148 96.179 98.104 1 19.64 ? C31 U52 401 B 1 
HETATM 32 C C32 U52 . . . J 2 66.736 97.565 98.646 1 19.64 ? C32 U52 401 B 1 
HETATM 33 C C33 U52 . . . J 2 67.509 94.448 101.456 1 19.64 ? C33 U52 401 B 1 
HETATM 34 C C34 U52 . . . J 2 66.184 95.769 97.03 1 19.64 ? C34 U52 401 B 1 
HETATM 35 H H1 U52 . . . J 2 77.118 95.975 100.733 1 19.64 ? H1 U52 401 B 1 
HETATM 36 H H2 U52 . . . J 2 77.184 95.758 102.504 1 19.64 ? H2 U52 401 B 1 
HETATM 37 H H3 U52 . . . J 2 72.582 92.691 104.558 1 19.64 ? H3 U52 401 B 1 
HETATM 38 H H4 U52 . . . J 2 72.194 94.246 105.35 1 19.64 ? H4 U52 401 B 1 
HETATM 39 H H5 U52 . . . J 2 71.199 93.639 104.051 1 19.64 ? H5 U52 401 B 1 
HETATM 40 H H6 U52 . . . J 2 70.139 97.949 103.432 1 19.64 ? H6 U52 401 B 1 
HETATM 41 H H7 U52 . . . J 2 73.593 98.198 100.957 1 19.64 ? H7 U52 401 B 1 
HETATM 42 H H8 U52 . . . J 2 68.559 102.085 99.183 1 19.64 ? H8 U52 401 B 1 
HETATM 43 H H9 U52 . . . J 2 67.543 97.159 101.83 1 19.64 ? H9 U52 401 B 1 
HETATM 44 H H10 U52 . . . J 2 66.036 96.727 101.05 1 19.64 ? H10 U52 401 B 1 
HETATM 45 H H11 U52 . . . J 2 80.584 93.575 99.536 1 19.64 ? H11 U52 401 B 1 
HETATM 46 H H12 U52 . . . J 2 81.292 94.683 100.701 1 19.64 ? H12 U52 401 B 1 
HETATM 47 H H13 U52 . . . J 2 81.026 95.184 99.039 1 19.64 ? H13 U52 401 B 1 
HETATM 48 H H14 U52 . . . J 2 78.901 95.832 99.704 1 19.64 ? H14 U52 401 B 1 
HETATM 49 H H15 U52 . . . J 2 75.17 96.426 100.898 1 19.64 ? H15 U52 401 B 1 
HETATM 50 H H16 U52 . . . J 2 70.837 95.768 104.188 1 19.64 ? H16 U52 401 B 1 
HETATM 51 H H17 U52 . . . J 2 72.157 100.19 101.564 1 19.64 ? H17 U52 401 B 1 
HETATM 52 H H18 U52 . . . J 2 68.827 95.691 100.3 1 19.64 ? H18 U52 401 B 1 
HETATM 53 H H19 U52 . . . J 2 67.687 94.209 98.773 1 19.64 ? H19 U52 401 B 1 
HETATM 54 H H20 U52 . . . J 2 66.143 94.863 99.369 1 19.64 ? H20 U52 401 B 1 
HETATM 55 H H21 U52 . . . J 2 68.156 96.205 97.68 1 19.64 ? H21 U52 401 B 1 
HETATM 56 H H22 U52 . . . J 2 65.636 97.589 98.774 1 19.64 ? H22 U52 401 B 1 
HETATM 57 H H23 U52 . . . J 2 66.958 98.317 97.945 1 19.64 ? H23 U52 401 B 1 
HETATM 58 H H24 U52 . . . J 2 67.736 93.469 101.019 1 19.64 ? H24 U52 401 B 1 
HETATM 59 H H25 U52 . . . J 2 68.141 94.517 102.34 1 19.64 ? H25 U52 401 B 1 
HETATM 60 H H26 U52 . . . J 2 66.479 94.386 101.812 1 19.64 ? H26 U52 401 B 1 
HETATM 61 H H27 U52 . . . J 2 66.231 94.688 96.821 1 19.64 ? H27 U52 401 B 1 
HETATM 62 H H28 U52 . . . J 2 65.146 95.998 97.32 1 19.64 ? H28 U52 401 B 1 
HETATM 63 H H29 U52 . . . J 2 66.32 96.297 96.084 1 19.64 ? H29 U52 401 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           63 
#