data_6XMX # _model_server_result.job_id hA16KYfO29nbnm1EUzIxpw _model_server_result.datetime_utc '2025-04-17 02:10:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":401}' # _entry.id 6XMX # _exptl.entry_id 6XMX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 484.978 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XMX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C24 H29 Cl N6 O3' _chem_comp.formula_weight 484.978 _chem_comp.id U52 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 U52 sing 356 n n O7 C10 U52 doub 357 n n N9 C10 U52 sing 358 n n N9 C15 U52 sing 359 n n C10 C11 U52 sing 360 n n C14 C15 U52 doub 361 n y C14 C13 U52 sing 362 n y C33 C29 U52 sing 363 n n C15 C16 U52 sing 364 n y C11 O6 U52 sing 365 n n C11 C12 U52 doub 366 n n O3 C4 U52 doub 367 n n O6 C5 U52 sing 368 n n C13 C18 U52 doub 369 n y C16 C12 U52 sing 370 n n C16 C17 U52 doub 371 n y C29 C28 U52 sing 372 n n C29 C30 U52 sing 373 n n C4 C5 U52 sing 374 n n C4 N2 U52 sing 375 n n C28 N20 U52 sing 376 n n C30 C31 U52 sing 377 n n C18 C17 U52 sing 378 n y C18 N19 U52 sing 379 n n C1 N2 U52 sing 380 n n N20 C32 U52 sing 381 n n N20 C24 U52 sing 382 n n N23 C24 U52 doub 383 n y N23 C22 U52 sing 384 n y N19 C22 U52 sing 385 n n C31 C32 U52 sing 386 n n C31 C34 U52 sing 387 n n C24 N25 U52 sing 388 n y C22 C27 U52 doub 389 n y N25 C26 U52 doub 390 n y C27 C26 U52 sing 391 n y C27 CL1 U52 sing 392 n n C5 H1 U52 sing 393 n n C5 H2 U52 sing 394 n n C8 H3 U52 sing 395 n n C8 H4 U52 sing 396 n n C8 H5 U52 sing 397 n n C13 H6 U52 sing 398 n n C17 H7 U52 sing 399 n n C26 H8 U52 sing 400 n n C28 H9 U52 sing 401 n n C28 H10 U52 sing 402 n n C1 H11 U52 sing 403 n n C1 H12 U52 sing 404 n n C1 H13 U52 sing 405 n n N2 H14 U52 sing 406 n n C12 H15 U52 sing 407 n n C14 H16 U52 sing 408 n n N19 H17 U52 sing 409 n n C29 H18 U52 sing 410 n n C30 H19 U52 sing 411 n n C30 H20 U52 sing 412 n n C31 H21 U52 sing 413 n n C32 H22 U52 sing 414 n n C32 H23 U52 sing 415 n n C33 H24 U52 sing 416 n n C33 H25 U52 sing 417 n n C33 H26 U52 sing 418 n n C34 H27 U52 sing 419 n n C34 H28 U52 sing 420 n n C34 H29 U52 sing 421 n n # _atom_sites.entry_id 6XMX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 U52 A 1 401 201 U52 U52 . J 2 U52 B 1 401 201 U52 U52 . K 2 U52 C 1 401 201 U52 U52 . L 2 U52 D 1 401 201 U52 U52 . M 2 U52 E 1 401 201 U52 U52 . N 2 U52 F 1 401 201 U52 U52 . O 2 U52 G 1 401 201 U52 U52 . P 2 U52 H 1 401 201 U52 U52 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 U52 . . . N 2 103.167 98.932 116.537 1 16.77 ? C4 U52 401 F 1 HETATM 2 C C5 U52 . . . N 2 102.046 99.917 116.74 1 16.77 ? C5 U52 401 F 1 HETATM 3 C C8 U52 . . . N 2 97.224 100.136 120.162 1 16.77 ? C8 U52 401 F 1 HETATM 4 C C10 U52 . . . N 2 99.05 99.564 118.566 1 16.77 ? C10 U52 401 F 1 HETATM 5 C C13 U52 . . . N 2 96.807 103.878 118.273 1 16.77 ? C13 U52 401 F 1 HETATM 6 C C15 U52 . . . N 2 97.908 101.725 118.443 1 16.77 ? C15 U52 401 F 1 HETATM 7 C C17 U52 . . . N 2 98.523 103.341 116.768 1 16.77 ? C17 U52 401 F 1 HETATM 8 C C22 U52 . . . N 2 96.333 105.925 115.881 1 16.77 ? C22 U52 401 F 1 HETATM 9 C C24 U52 . . . N 2 94.134 105.46 115.291 1 16.77 ? C24 U52 401 F 1 HETATM 10 C C26 U52 . . . N 2 95.087 107.381 114.478 1 16.77 ? C26 U52 401 F 1 HETATM 11 C C28 U52 . . . N 2 92.592 103.901 116.556 1 16.77 ? C28 U52 401 F 1 HETATM 12 C C1 U52 . . . N 2 104.973 98.265 114.948 1 16.77 ? C1 U52 401 F 1 HETATM 13 N N2 U52 . . . N 2 103.861 99.098 115.351 1 16.77 ? N2 U52 401 F 1 HETATM 14 O O3 U52 . . . N 2 103.465 98.062 117.337 1 16.77 ? O3 U52 401 F 1 HETATM 15 O O6 U52 . . . N 2 100.83 99.194 116.92 1 16.77 ? O6 U52 401 F 1 HETATM 16 O O7 U52 . . . N 2 99.174 98.468 119.117 1 16.77 ? O7 U52 401 F 1 HETATM 17 N N9 U52 . . . N 2 98.077 100.485 119.032 1 16.77 ? N9 U52 401 F 1 HETATM 18 C C11 U52 . . . N 2 99.849 99.992 117.435 1 16.77 ? C11 U52 401 F 1 HETATM 19 C C12 U52 . . . N 2 99.668 101.191 116.894 1 16.77 ? C12 U52 401 F 1 HETATM 20 C C14 U52 . . . N 2 96.948 102.649 118.87 1 16.77 ? C14 U52 401 F 1 HETATM 21 C C16 U52 . . . N 2 98.696 102.098 117.368 1 16.77 ? C16 U52 401 F 1 HETATM 22 C C18 U52 . . . N 2 97.609 104.265 117.199 1 16.77 ? C18 U52 401 F 1 HETATM 23 N N19 U52 . . . N 2 97.429 105.526 116.571 1 16.77 ? N19 U52 401 F 1 HETATM 24 N N20 U52 . . . N 2 92.996 104.608 115.37 1 16.77 ? N20 U52 401 F 1 HETATM 25 CL CL1 U52 . . . N 2 97.553 108.153 114.985 1 16.77 ? CL1 U52 401 F 1 HETATM 26 N N23 U52 . . . N 2 95.243 105.107 115.954 1 16.77 ? N23 U52 401 F 1 HETATM 27 N N25 U52 . . . N 2 94.006 106.596 114.536 1 16.77 ? N25 U52 401 F 1 HETATM 28 C C27 U52 . . . N 2 96.266 107.098 115.125 1 16.77 ? C27 U52 401 F 1 HETATM 29 C C29 U52 . . . N 2 92.837 102.43 116.303 1 16.77 ? C29 U52 401 F 1 HETATM 30 C C30 U52 . . . N 2 92.01 101.937 115.164 1 16.77 ? C30 U52 401 F 1 HETATM 31 C C31 U52 . . . N 2 92.155 102.823 113.943 1 16.77 ? C31 U52 401 F 1 HETATM 32 C C32 U52 . . . N 2 92.14 104.332 114.269 1 16.77 ? C32 U52 401 F 1 HETATM 33 C C33 U52 . . . N 2 92.479 101.574 117.506 1 16.77 ? C33 U52 401 F 1 HETATM 34 C C34 U52 . . . N 2 91.007 102.509 113.029 1 16.77 ? C34 U52 401 F 1 HETATM 35 H H1 U52 . . . N 2 102.036 100.55 115.836 1 16.77 ? H1 U52 401 F 1 HETATM 36 H H2 U52 . . . N 2 102.252 100.586 117.598 1 16.77 ? H2 U52 401 F 1 HETATM 37 H H3 U52 . . . N 2 97.309 99.094 120.471 1 16.77 ? H3 U52 401 F 1 HETATM 38 H H4 U52 . . . N 2 97.403 100.794 121.02 1 16.77 ? H4 U52 401 F 1 HETATM 39 H H5 U52 . . . N 2 96.154 100.291 119.935 1 16.77 ? H5 U52 401 F 1 HETATM 40 H H6 U52 . . . N 2 96.057 104.571 118.658 1 16.77 ? H6 U52 401 F 1 HETATM 41 H H7 U52 . . . N 2 99.165 103.574 115.927 1 16.77 ? H7 U52 401 F 1 HETATM 42 H H8 U52 . . . N 2 95.009 108.259 113.892 1 16.77 ? H8 U52 401 F 1 HETATM 43 H H9 U52 . . . N 2 93.182 104.212 117.413 1 16.77 ? H9 U52 401 F 1 HETATM 44 H H10 U52 . . . N 2 91.536 104.061 116.827 1 16.77 ? H10 U52 401 F 1 HETATM 45 H H11 U52 . . . N 2 104.701 97.215 114.813 1 16.77 ? H11 U52 401 F 1 HETATM 46 H H12 U52 . . . N 2 105.785 98.295 115.688 1 16.77 ? H12 U52 401 F 1 HETATM 47 H H13 U52 . . . N 2 105.419 98.563 114.001 1 16.77 ? H13 U52 401 F 1 HETATM 48 H H14 U52 . . . N 2 103.608 99.817 114.716 1 16.77 ? H14 U52 401 F 1 HETATM 49 H H15 U52 . . . N 2 100.273 101.484 116.052 1 16.77 ? H15 U52 401 F 1 HETATM 50 H H16 U52 . . . N 2 96.312 102.419 119.727 1 16.77 ? H16 U52 401 F 1 HETATM 51 H H17 U52 . . . N 2 98.311 105.866 116.201 1 16.77 ? H17 U52 401 F 1 HETATM 52 H H18 U52 . . . N 2 93.908 102.261 116.06 1 16.77 ? H18 U52 401 F 1 HETATM 53 H H19 U52 . . . N 2 92.387 100.936 114.915 1 16.77 ? H19 U52 401 F 1 HETATM 54 H H20 U52 . . . N 2 90.947 101.75 115.446 1 16.77 ? H20 U52 401 F 1 HETATM 55 H H21 U52 . . . N 2 93.107 102.541 113.416 1 16.77 ? H21 U52 401 F 1 HETATM 56 H H22 U52 . . . N 2 91.099 104.649 114.461 1 16.77 ? H22 U52 401 F 1 HETATM 57 H H23 U52 . . . N 2 92.467 104.897 113.383 1 16.77 ? H23 U52 401 F 1 HETATM 58 H H24 U52 . . . N 2 92.094 100.595 117.195 1 16.77 ? H24 U52 401 F 1 HETATM 59 H H25 U52 . . . N 2 93.312 101.353 118.166 1 16.77 ? H25 U52 401 F 1 HETATM 60 H H26 U52 . . . N 2 91.7 102.012 118.135 1 16.77 ? H26 U52 401 F 1 HETATM 61 H H27 U52 . . . N 2 91.045 101.484 112.631 1 16.77 ? H27 U52 401 F 1 HETATM 62 H H28 U52 . . . N 2 90.048 102.603 113.571 1 16.77 ? H28 U52 401 F 1 HETATM 63 H H29 U52 . . . N 2 90.925 103.212 112.183 1 16.77 ? H29 U52 401 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 63 #