data_6XMX # _model_server_result.job_id uLWhFAplkPgh_QNn8J8f_A _model_server_result.datetime_utc '2025-09-14 15:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":401}' # _entry.id 6XMX # _exptl.entry_id 6XMX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 484.978 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XMX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C24 H29 Cl N6 O3' _chem_comp.formula_weight 484.978 _chem_comp.id U52 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 U52 sing 356 n n O7 C10 U52 doub 357 n n N9 C10 U52 sing 358 n n N9 C15 U52 sing 359 n n C10 C11 U52 sing 360 n n C14 C15 U52 doub 361 n y C14 C13 U52 sing 362 n y C33 C29 U52 sing 363 n n C15 C16 U52 sing 364 n y C11 O6 U52 sing 365 n n C11 C12 U52 doub 366 n n O3 C4 U52 doub 367 n n O6 C5 U52 sing 368 n n C13 C18 U52 doub 369 n y C16 C12 U52 sing 370 n n C16 C17 U52 doub 371 n y C29 C28 U52 sing 372 n n C29 C30 U52 sing 373 n n C4 C5 U52 sing 374 n n C4 N2 U52 sing 375 n n C28 N20 U52 sing 376 n n C30 C31 U52 sing 377 n n C18 C17 U52 sing 378 n y C18 N19 U52 sing 379 n n C1 N2 U52 sing 380 n n N20 C32 U52 sing 381 n n N20 C24 U52 sing 382 n n N23 C24 U52 doub 383 n y N23 C22 U52 sing 384 n y N19 C22 U52 sing 385 n n C31 C32 U52 sing 386 n n C31 C34 U52 sing 387 n n C24 N25 U52 sing 388 n y C22 C27 U52 doub 389 n y N25 C26 U52 doub 390 n y C27 C26 U52 sing 391 n y C27 CL1 U52 sing 392 n n C5 H1 U52 sing 393 n n C5 H2 U52 sing 394 n n C8 H3 U52 sing 395 n n C8 H4 U52 sing 396 n n C8 H5 U52 sing 397 n n C13 H6 U52 sing 398 n n C17 H7 U52 sing 399 n n C26 H8 U52 sing 400 n n C28 H9 U52 sing 401 n n C28 H10 U52 sing 402 n n C1 H11 U52 sing 403 n n C1 H12 U52 sing 404 n n C1 H13 U52 sing 405 n n N2 H14 U52 sing 406 n n C12 H15 U52 sing 407 n n C14 H16 U52 sing 408 n n N19 H17 U52 sing 409 n n C29 H18 U52 sing 410 n n C30 H19 U52 sing 411 n n C30 H20 U52 sing 412 n n C31 H21 U52 sing 413 n n C32 H22 U52 sing 414 n n C32 H23 U52 sing 415 n n C33 H24 U52 sing 416 n n C33 H25 U52 sing 417 n n C33 H26 U52 sing 418 n n C34 H27 U52 sing 419 n n C34 H28 U52 sing 420 n n C34 H29 U52 sing 421 n n # _atom_sites.entry_id 6XMX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 U52 A 1 401 201 U52 U52 . J 2 U52 B 1 401 201 U52 U52 . K 2 U52 C 1 401 201 U52 U52 . L 2 U52 D 1 401 201 U52 U52 . M 2 U52 E 1 401 201 U52 U52 . N 2 U52 F 1 401 201 U52 U52 . O 2 U52 G 1 401 201 U52 U52 . P 2 U52 H 1 401 201 U52 U52 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 U52 . . . P 2 130.028 99.134 128.581 1 24.46 ? C4 U52 401 H 1 HETATM 2 C C5 U52 . . . P 2 129.183 100.378 128.663 1 24.46 ? C5 U52 401 H 1 HETATM 3 C C8 U52 . . . P 2 124.894 102.302 132.257 1 24.46 ? C8 U52 401 H 1 HETATM 4 C C10 U52 . . . P 2 126.379 101.056 130.691 1 24.46 ? C10 U52 401 H 1 HETATM 5 C C13 U52 . . . P 2 125.145 105.671 129.741 1 24.46 ? C13 U52 401 H 1 HETATM 6 C C15 U52 . . . P 2 125.745 103.376 130.24 1 24.46 ? C15 U52 401 H 1 HETATM 7 C C17 U52 . . . P 2 126.54 104.5 128.264 1 24.46 ? C17 U52 401 H 1 HETATM 8 C C22 U52 . . . P 2 124.91 107.349 127.045 1 24.46 ? C22 U52 401 H 1 HETATM 9 C C24 U52 . . . P 2 122.616 107.332 126.677 1 24.46 ? C24 U52 401 H 1 HETATM 10 C C26 U52 . . . P 2 123.892 108.81 125.473 1 24.46 ? C26 U52 401 H 1 HETATM 11 C C28 U52 . . . P 2 120.895 106.417 128.293 1 24.46 ? C28 U52 401 H 1 HETATM 12 C C1 U52 . . . P 2 131.472 97.802 127.04 1 24.46 ? C1 U52 401 H 1 HETATM 13 N N2 U52 . . . P 2 130.621 98.932 127.346 1 24.46 ? N2 U52 401 H 1 HETATM 14 O O3 U52 . . . P 2 130.2 98.363 129.508 1 24.46 ? O3 U52 401 H 1 HETATM 15 O O6 U52 . . . P 2 127.858 100.005 129.042 1 24.46 ? O6 U52 401 H 1 HETATM 16 O O7 U52 . . . P 2 126.307 100.069 131.425 1 24.46 ? O7 U52 401 H 1 HETATM 17 N N9 U52 . . . P 2 125.688 102.246 131.035 1 24.46 ? N9 U52 401 H 1 HETATM 18 C C11 U52 . . . P 2 127.138 101.089 129.457 1 24.46 ? C11 U52 401 H 1 HETATM 19 C C12 U52 . . . P 2 127.179 102.19 128.717 1 24.46 ? C12 U52 401 H 1 HETATM 20 C C14 U52 . . . P 2 125.064 104.56 130.544 1 24.46 ? C14 U52 401 H 1 HETATM 21 C C16 U52 . . . P 2 126.487 103.368 129.071 1 24.46 ? C16 U52 401 H 1 HETATM 22 C C18 U52 . . . P 2 125.904 105.674 128.57 1 24.46 ? C18 U52 401 H 1 HETATM 23 N N19 U52 . . . P 2 125.951 106.82 127.733 1 24.46 ? N19 U52 401 H 1 HETATM 24 N N20 U52 . . . P 2 121.329 106.801 126.977 1 24.46 ? N20 U52 401 H 1 HETATM 25 CL CL1 U52 . . . P 2 126.506 109.043 125.688 1 24.46 ? CL1 U52 401 H 1 HETATM 26 N N23 U52 . . . P 2 123.677 106.839 127.329 1 24.46 ? N23 U52 401 H 1 HETATM 27 N N25 U52 . . . P 2 122.673 108.325 125.735 1 24.46 ? N25 U52 401 H 1 HETATM 28 C C27 U52 . . . P 2 125.034 108.363 126.092 1 24.46 ? C27 U52 401 H 1 HETATM 29 C C29 U52 . . . P 2 120.777 104.909 128.3 1 24.46 ? C29 U52 401 H 1 HETATM 30 C C30 U52 . . . P 2 119.753 104.447 127.319 1 24.46 ? C30 U52 401 H 1 HETATM 31 C C31 U52 . . . P 2 119.972 105.059 125.951 1 24.46 ? C31 U52 401 H 1 HETATM 32 C C32 U52 . . . P 2 120.329 106.56 125.995 1 24.46 ? C32 U52 401 H 1 HETATM 33 C C33 U52 . . . P 2 120.356 104.373 129.658 1 24.46 ? C33 U52 401 H 1 HETATM 34 C C34 U52 . . . P 2 118.699 104.882 125.177 1 24.46 ? C34 U52 401 H 1 HETATM 35 H H1 U52 . . . P 2 129.218 100.833 127.666 1 24.46 ? H1 U52 401 H 1 HETATM 36 H H2 U52 . . . P 2 129.608 101.101 129.372 1 24.46 ? H2 U52 401 H 1 HETATM 37 H H3 U52 . . . P 2 124.719 101.324 132.713 1 24.46 ? H3 U52 401 H 1 HETATM 38 H H4 U52 . . . P 2 125.329 102.976 133 1 24.46 ? H4 U52 401 H 1 HETATM 39 H H5 U52 . . . P 2 123.887 102.727 132.082 1 24.46 ? H5 U52 401 H 1 HETATM 40 H H6 U52 . . . P 2 124.601 106.574 130.037 1 24.46 ? H6 U52 401 H 1 HETATM 41 H H7 U52 . . . P 2 127.142 104.435 127.359 1 24.46 ? H7 U52 401 H 1 HETATM 42 H H8 U52 . . . P 2 123.957 109.589 124.735 1 24.46 ? H8 U52 401 H 1 HETATM 43 H H9 U52 . . . P 2 121.623 106.715 129.038 1 24.46 ? H9 U52 401 H 1 HETATM 44 H H10 U52 . . . P 2 119.931 106.873 128.6 1 24.46 ? H10 U52 401 H 1 HETATM 45 H H11 U52 . . . P 2 130.953 96.843 127.108 1 24.46 ? H11 U52 401 H 1 HETATM 46 H H12 U52 . . . P 2 132.326 97.744 127.737 1 24.46 ? H12 U52 401 H 1 HETATM 47 H H13 U52 . . . P 2 131.902 97.831 126.031 1 24.46 ? H13 U52 401 H 1 HETATM 48 H H14 U52 . . . P 2 130.469 99.574 126.606 1 24.46 ? H14 U52 401 H 1 HETATM 49 H H15 U52 . . . P 2 127.757 102.187 127.805 1 24.46 ? H15 U52 401 H 1 HETATM 50 H H16 U52 . . . P 2 124.47 104.631 131.46 1 24.46 ? H16 U52 401 H 1 HETATM 51 H H17 U52 . . . P 2 126.861 106.922 127.3 1 24.46 ? H17 U52 401 H 1 HETATM 52 H H18 U52 . . . P 2 121.764 104.457 128.034 1 24.46 ? H18 U52 401 H 1 HETATM 53 H H19 U52 . . . P 2 119.774 103.329 127.251 1 24.46 ? H19 U52 401 H 1 HETATM 54 H H20 U52 . . . P 2 118.716 104.628 127.69 1 24.46 ? H20 U52 401 H 1 HETATM 55 H H21 U52 . . . P 2 120.778 104.485 125.425 1 24.46 ? H21 U52 401 H 1 HETATM 56 H H22 U52 . . . P 2 119.407 107.139 126.188 1 24.46 ? H22 U52 401 H 1 HETATM 57 H H23 U52 . . . P 2 120.687 106.88 125.016 1 24.46 ? H23 U52 401 H 1 HETATM 58 H H24 U52 . . . P 2 119.666 103.523 129.558 1 24.46 ? H24 U52 401 H 1 HETATM 59 H H25 U52 . . . P 2 121.18 104.011 130.276 1 24.46 ? H25 U52 401 H 1 HETATM 60 H H26 U52 . . . P 2 119.827 105.114 130.27 1 24.46 ? H26 U52 401 H 1 HETATM 61 H H27 U52 . . . P 2 118.372 103.839 125.139 1 24.46 ? H27 U52 401 H 1 HETATM 62 H H28 U52 . . . P 2 117.888 105.445 125.659 1 24.46 ? H28 U52 401 H 1 HETATM 63 H H29 U52 . . . P 2 118.743 105.274 124.153 1 24.46 ? H29 U52 401 H 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 63 #