data_6XO3
#
_model_server_result.job_id            MXFHJqqoUXIXtZ556J7RvQ 
_model_server_result.datetime_utc      '2025-01-09 11:32:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xo3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6XO3 
#
_exptl.entry_id    6XO3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XO3 
_cell.length_a            61.454 
_cell.length_b            61.454 
_cell.length_c            167.271 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 132 A HIS 132 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 A OD1 ASP 134 A ASP 134 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc3 A NE2 HIS 295 A HIS 295 1_555 C FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc4 B O2 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc5 B O5 AKG . A AKG 401 1_555 C FE FE2 . A FE2 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc6 C FE FE2 . A FE2 402 1_555 E O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc7 C FE FE2 . A FE2 402 1_555 E O HOH . A HOH 561 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc8 C FE FE2 . A FE2 402 1_555 E O HOH . A HOH 652 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6XO3 
_atom_sites.fract_transf_matrix[1][1]    0.016272 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 401 401 AKG AKG . 
C 3 FE2 A 1 402 1 FE2 FE . 
D 4 CL A 1 403 1 CL CL . 
E 5 HOH A 1 501 64 HOH HOH . 
E 5 HOH A 2 502 162 HOH HOH . 
E 5 HOH A 3 503 81 HOH HOH . 
E 5 HOH A 4 504 37 HOH HOH . 
E 5 HOH A 5 505 113 HOH HOH . 
E 5 HOH A 6 506 175 HOH HOH . 
E 5 HOH A 7 507 76 HOH HOH . 
E 5 HOH A 8 508 12 HOH HOH . 
E 5 HOH A 9 509 157 HOH HOH . 
E 5 HOH A 10 510 35 HOH HOH . 
E 5 HOH A 11 511 147 HOH HOH . 
E 5 HOH A 12 512 115 HOH HOH . 
E 5 HOH A 13 513 45 HOH HOH . 
E 5 HOH A 14 514 15 HOH HOH . 
E 5 HOH A 15 515 1 HOH HOH . 
E 5 HOH A 16 516 136 HOH HOH . 
E 5 HOH A 17 517 125 HOH HOH . 
E 5 HOH A 18 518 39 HOH HOH . 
E 5 HOH A 19 519 123 HOH HOH . 
E 5 HOH A 20 520 38 HOH HOH . 
E 5 HOH A 21 521 59 HOH HOH . 
E 5 HOH A 22 522 170 HOH HOH . 
E 5 HOH A 23 523 19 HOH HOH . 
E 5 HOH A 24 524 128 HOH HOH . 
E 5 HOH A 25 525 78 HOH HOH . 
E 5 HOH A 26 526 74 HOH HOH . 
E 5 HOH A 27 527 29 HOH HOH . 
E 5 HOH A 28 528 102 HOH HOH . 
E 5 HOH A 29 529 152 HOH HOH . 
E 5 HOH A 30 530 85 HOH HOH . 
E 5 HOH A 31 531 6 HOH HOH . 
E 5 HOH A 32 532 48 HOH HOH . 
E 5 HOH A 33 533 30 HOH HOH . 
E 5 HOH A 34 534 60 HOH HOH . 
E 5 HOH A 35 535 53 HOH HOH . 
E 5 HOH A 36 536 160 HOH HOH . 
E 5 HOH A 37 537 95 HOH HOH . 
E 5 HOH A 38 538 57 HOH HOH . 
E 5 HOH A 39 539 106 HOH HOH . 
E 5 HOH A 40 540 18 HOH HOH . 
E 5 HOH A 41 541 121 HOH HOH . 
E 5 HOH A 42 542 86 HOH HOH . 
E 5 HOH A 43 543 2 HOH HOH . 
E 5 HOH A 44 544 10 HOH HOH . 
E 5 HOH A 45 545 91 HOH HOH . 
E 5 HOH A 46 546 156 HOH HOH . 
E 5 HOH A 47 547 93 HOH HOH . 
E 5 HOH A 48 548 75 HOH HOH . 
E 5 HOH A 49 549 72 HOH HOH . 
E 5 HOH A 50 550 17 HOH HOH . 
E 5 HOH A 51 551 63 HOH HOH . 
E 5 HOH A 52 552 55 HOH HOH . 
E 5 HOH A 53 553 61 HOH HOH . 
E 5 HOH A 54 554 139 HOH HOH . 
E 5 HOH A 55 555 143 HOH HOH . 
E 5 HOH A 56 556 27 HOH HOH . 
E 5 HOH A 57 557 3 HOH HOH . 
E 5 HOH A 58 558 126 HOH HOH . 
E 5 HOH A 59 559 172 HOH HOH . 
E 5 HOH A 60 560 166 HOH HOH . 
E 5 HOH A 61 561 179 HOH HOH . 
E 5 HOH A 62 562 11 HOH HOH . 
E 5 HOH A 63 563 135 HOH HOH . 
E 5 HOH A 64 564 65 HOH HOH . 
E 5 HOH A 65 565 140 HOH HOH . 
E 5 HOH A 66 566 9 HOH HOH . 
E 5 HOH A 67 567 62 HOH HOH . 
E 5 HOH A 68 568 100 HOH HOH . 
E 5 HOH A 69 569 132 HOH HOH . 
E 5 HOH A 70 570 107 HOH HOH . 
E 5 HOH A 71 571 129 HOH HOH . 
E 5 HOH A 72 572 7 HOH HOH . 
E 5 HOH A 73 573 46 HOH HOH . 
E 5 HOH A 74 574 20 HOH HOH . 
E 5 HOH A 75 575 127 HOH HOH . 
E 5 HOH A 76 576 4 HOH HOH . 
E 5 HOH A 77 577 153 HOH HOH . 
E 5 HOH A 78 578 44 HOH HOH . 
E 5 HOH A 79 579 104 HOH HOH . 
E 5 HOH A 80 580 41 HOH HOH . 
E 5 HOH A 81 581 83 HOH HOH . 
E 5 HOH A 82 582 26 HOH HOH . 
E 5 HOH A 83 583 49 HOH HOH . 
E 5 HOH A 84 584 82 HOH HOH . 
E 5 HOH A 85 585 28 HOH HOH . 
E 5 HOH A 86 586 67 HOH HOH . 
E 5 HOH A 87 587 43 HOH HOH . 
E 5 HOH A 88 588 14 HOH HOH . 
E 5 HOH A 89 589 31 HOH HOH . 
E 5 HOH A 90 590 109 HOH HOH . 
E 5 HOH A 91 591 111 HOH HOH . 
E 5 HOH A 92 592 131 HOH HOH . 
E 5 HOH A 93 593 50 HOH HOH . 
E 5 HOH A 94 594 90 HOH HOH . 
E 5 HOH A 95 595 98 HOH HOH . 
E 5 HOH A 96 596 88 HOH HOH . 
E 5 HOH A 97 597 54 HOH HOH . 
E 5 HOH A 98 598 25 HOH HOH . 
E 5 HOH A 99 599 149 HOH HOH . 
E 5 HOH A 100 600 116 HOH HOH . 
E 5 HOH A 101 601 36 HOH HOH . 
E 5 HOH A 102 602 42 HOH HOH . 
E 5 HOH A 103 603 112 HOH HOH . 
E 5 HOH A 104 604 13 HOH HOH . 
E 5 HOH A 105 605 16 HOH HOH . 
E 5 HOH A 106 606 77 HOH HOH . 
E 5 HOH A 107 607 144 HOH HOH . 
E 5 HOH A 108 608 56 HOH HOH . 
E 5 HOH A 109 609 92 HOH HOH . 
E 5 HOH A 110 610 21 HOH HOH . 
E 5 HOH A 111 611 5 HOH HOH . 
E 5 HOH A 112 612 22 HOH HOH . 
E 5 HOH A 113 613 8 HOH HOH . 
E 5 HOH A 114 614 32 HOH HOH . 
E 5 HOH A 115 615 24 HOH HOH . 
E 5 HOH A 116 616 105 HOH HOH . 
E 5 HOH A 117 617 33 HOH HOH . 
E 5 HOH A 118 618 87 HOH HOH . 
E 5 HOH A 119 619 47 HOH HOH . 
E 5 HOH A 120 620 71 HOH HOH . 
E 5 HOH A 121 621 142 HOH HOH . 
E 5 HOH A 122 622 97 HOH HOH . 
E 5 HOH A 123 623 66 HOH HOH . 
E 5 HOH A 124 624 150 HOH HOH . 
E 5 HOH A 125 625 164 HOH HOH . 
E 5 HOH A 126 626 174 HOH HOH . 
E 5 HOH A 127 627 40 HOH HOH . 
E 5 HOH A 128 628 168 HOH HOH . 
E 5 HOH A 129 629 154 HOH HOH . 
E 5 HOH A 130 630 96 HOH HOH . 
E 5 HOH A 131 631 108 HOH HOH . 
E 5 HOH A 132 632 70 HOH HOH . 
E 5 HOH A 133 633 23 HOH HOH . 
E 5 HOH A 134 634 178 HOH HOH . 
E 5 HOH A 135 635 122 HOH HOH . 
E 5 HOH A 136 636 84 HOH HOH . 
E 5 HOH A 137 637 145 HOH HOH . 
E 5 HOH A 138 638 89 HOH HOH . 
E 5 HOH A 139 639 117 HOH HOH . 
E 5 HOH A 140 640 167 HOH HOH . 
E 5 HOH A 141 641 52 HOH HOH . 
E 5 HOH A 142 642 94 HOH HOH . 
E 5 HOH A 143 643 51 HOH HOH . 
E 5 HOH A 144 644 134 HOH HOH . 
E 5 HOH A 145 645 159 HOH HOH . 
E 5 HOH A 146 646 124 HOH HOH . 
E 5 HOH A 147 647 58 HOH HOH . 
E 5 HOH A 148 648 133 HOH HOH . 
E 5 HOH A 149 649 176 HOH HOH . 
E 5 HOH A 150 650 103 HOH HOH . 
E 5 HOH A 151 651 34 HOH HOH . 
E 5 HOH A 152 652 177 HOH HOH . 
E 5 HOH A 153 653 68 HOH HOH . 
E 5 HOH A 154 654 171 HOH HOH . 
E 5 HOH A 155 655 80 HOH HOH . 
E 5 HOH A 156 656 73 HOH HOH . 
E 5 HOH A 157 657 173 HOH HOH . 
E 5 HOH A 158 658 130 HOH HOH . 
E 5 HOH A 159 659 141 HOH HOH . 
E 5 HOH A 160 660 137 HOH HOH . 
E 5 HOH A 161 661 69 HOH HOH . 
E 5 HOH A 162 662 146 HOH HOH . 
E 5 HOH A 163 663 163 HOH HOH . 
E 5 HOH A 164 664 165 HOH HOH . 
E 5 HOH A 165 665 114 HOH HOH . 
E 5 HOH A 166 666 101 HOH HOH . 
E 5 HOH A 167 667 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . A . B 2 2.722 -23.104 175.041 0.61 31.96 ? C1 AKG 401 A 1 
HETATM 2 O O1 AKG . A . B 2 2.081 -23.563 174 0.61 29.71 ? O1 AKG 401 A 1 
HETATM 3 O O2 AKG . A . B 2 3.759 -23.605 175.465 0.61 30.72 ? O2 AKG 401 A 1 
HETATM 4 C C2 AKG . A . B 2 2.129 -21.849 175.683 0.61 32.37 ? C2 AKG 401 A 1 
HETATM 5 O O5 AKG . A . B 2 2.573 -21.37 176.722 0.61 29.81 ? O5 AKG 401 A 1 
HETATM 6 C C3 AKG . A . B 2 0.936 -21.238 175.002 0.61 34.51 ? C3 AKG 401 A 1 
HETATM 7 C C4 AKG . A . B 2 0.983 -19.717 174.977 0.61 33.32 ? C4 AKG 401 A 1 
HETATM 8 C C5 AKG . A . B 2 -0.112 -19.094 174.158 0.61 36.85 ? C5 AKG 401 A 1 
HETATM 9 O O3 AKG . A . B 2 -0.047 -19.382 172.883 0.61 27.92 ? O3 AKG 401 A 1 
HETATM 10 O O4 AKG . A . B 2 -0.986 -18.391 174.631 0.61 40.76 ? O4 AKG 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#