data_6XOC # _model_server_result.job_id yX-eg7paH6AI4UudnT4CZA _model_server_result.datetime_utc '2024-10-19 19:45:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xoc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":309}' # _entry.id 6XOC # _exptl.entry_id 6XOC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XOC _cell.length_a 100.016 _cell.length_b 114.417 _cell.length_c 220.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 Q N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 148 A CYS 139 1_555 A SG CYS 204 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 93 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf4 B SG CYS 139 B CYS 134 1_555 B SG CYS 199 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 C SG CYS 148 H CYS 140 1_555 C SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf7 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? disulf ? disulf8 D SG CYS 130 L CYS 130 1_555 D SG CYS 190 L CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OG SER 76 A SER 75 1_555 F K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? metalc ? metalc2 A OH TYR 80 A TYR 79 1_555 F K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.432 ? metalc ? metalc3 G K K . A K 303 1_555 V O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 246 n n C1 C2 PEG sing 247 n n C1 H11 PEG sing 248 n n C1 H12 PEG sing 249 n n O1 HO1 PEG sing 250 n n C2 O2 PEG sing 251 n n C2 H21 PEG sing 252 n n C2 H22 PEG sing 253 n n O2 C3 PEG sing 254 n n C3 C4 PEG sing 255 n n C3 H31 PEG sing 256 n n C3 H32 PEG sing 257 n n C4 O4 PEG sing 258 n n C4 H41 PEG sing 259 n n C4 H42 PEG sing 260 n n O4 HO4 PEG sing 261 n n # _atom_sites.entry_id 6XOC _atom_sites.fract_transf_matrix[1][1] 0.009998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 K A 1 301 1 K K . F 5 K A 1 302 2 K K . G 5 K A 1 303 3 K K . H 6 EDO A 1 304 1 EDO EDO . I 6 EDO A 1 305 2 EDO EDO . J 6 EDO A 1 306 3 EDO EDO . K 6 EDO A 1 307 68 EDO EDO . L 6 EDO A 1 308 100 EDO EDO . M 7 PEG A 1 309 118 PEG PEG . N 8 SCN A 1 310 150 SCN SCN . O 9 TRS A 1 311 250 TRS TRS . P 6 EDO B 1 301 18 EDO EDO . Q 7 PEG B 1 302 63 PEG PEG . R 6 EDO H 1 1101 1101 EDO EDO . S 6 EDO L 1 301 301 EDO EDO . T 6 EDO L 1 302 401 EDO EDO . U 7 PEG L 1 303 1201 PEG PEG . V 10 HOH A 1 401 168 HOH HOH . V 10 HOH A 2 402 169 HOH HOH . V 10 HOH A 3 403 311 HOH HOH . V 10 HOH A 4 404 278 HOH HOH . V 10 HOH A 5 405 315 HOH HOH . V 10 HOH A 6 406 30 HOH HOH . V 10 HOH A 7 407 295 HOH HOH . V 10 HOH A 8 408 47 HOH HOH . V 10 HOH A 9 409 29 HOH HOH . V 10 HOH A 10 410 39 HOH HOH . V 10 HOH A 11 411 138 HOH HOH . V 10 HOH A 12 412 151 HOH HOH . V 10 HOH A 13 413 80 HOH HOH . V 10 HOH A 14 414 4 HOH HOH . V 10 HOH A 15 415 142 HOH HOH . V 10 HOH A 16 416 38 HOH HOH . V 10 HOH A 17 417 144 HOH HOH . V 10 HOH A 18 418 105 HOH HOH . V 10 HOH A 19 419 263 HOH HOH . V 10 HOH A 20 420 294 HOH HOH . V 10 HOH A 21 421 28 HOH HOH . V 10 HOH A 22 422 289 HOH HOH . V 10 HOH A 23 423 110 HOH HOH . V 10 HOH A 24 424 172 HOH HOH . V 10 HOH A 25 425 220 HOH HOH . V 10 HOH A 26 426 45 HOH HOH . V 10 HOH A 27 427 49 HOH HOH . V 10 HOH A 28 428 319 HOH HOH . V 10 HOH A 29 429 43 HOH HOH . V 10 HOH A 30 430 99 HOH HOH . V 10 HOH A 31 431 55 HOH HOH . V 10 HOH A 32 432 176 HOH HOH . V 10 HOH A 33 433 275 HOH HOH . V 10 HOH A 34 434 83 HOH HOH . V 10 HOH A 35 435 218 HOH HOH . V 10 HOH A 36 436 164 HOH HOH . V 10 HOH A 37 437 303 HOH HOH . V 10 HOH A 38 438 54 HOH HOH . V 10 HOH A 39 439 50 HOH HOH . V 10 HOH A 40 440 307 HOH HOH . V 10 HOH A 41 441 174 HOH HOH . V 10 HOH A 42 442 264 HOH HOH . V 10 HOH A 43 443 35 HOH HOH . V 10 HOH A 44 444 266 HOH HOH . V 10 HOH A 45 445 41 HOH HOH . V 10 HOH A 46 446 145 HOH HOH . V 10 HOH A 47 447 209 HOH HOH . V 10 HOH A 48 448 40 HOH HOH . V 10 HOH A 49 449 136 HOH HOH . V 10 HOH A 50 450 137 HOH HOH . V 10 HOH A 51 451 112 HOH HOH . V 10 HOH A 52 452 76 HOH HOH . V 10 HOH A 53 453 302 HOH HOH . V 10 HOH A 54 454 308 HOH HOH . V 10 HOH A 55 455 221 HOH HOH . V 10 HOH A 56 456 304 HOH HOH . V 10 HOH A 57 457 191 HOH HOH . V 10 HOH A 58 458 246 HOH HOH . V 10 HOH A 59 459 46 HOH HOH . V 10 HOH A 60 460 36 HOH HOH . V 10 HOH A 61 461 52 HOH HOH . V 10 HOH A 62 462 290 HOH HOH . V 10 HOH A 63 463 178 HOH HOH . V 10 HOH A 64 464 177 HOH HOH . V 10 HOH A 65 465 146 HOH HOH . V 10 HOH A 66 466 53 HOH HOH . V 10 HOH A 67 467 223 HOH HOH . V 10 HOH A 68 468 31 HOH HOH . V 10 HOH A 69 469 33 HOH HOH . V 10 HOH A 70 470 179 HOH HOH . V 10 HOH A 71 471 3 HOH HOH . V 10 HOH A 72 472 134 HOH HOH . V 10 HOH A 73 473 64 HOH HOH . V 10 HOH A 74 474 143 HOH HOH . V 10 HOH A 75 475 310 HOH HOH . V 10 HOH A 76 476 306 HOH HOH . V 10 HOH A 77 477 301 HOH HOH . V 10 HOH A 78 478 305 HOH HOH . V 10 HOH A 79 479 42 HOH HOH . W 10 HOH B 1 401 226 HOH HOH . W 10 HOH B 2 402 65 HOH HOH . W 10 HOH B 3 403 236 HOH HOH . W 10 HOH B 4 404 59 HOH HOH . W 10 HOH B 5 405 66 HOH HOH . W 10 HOH B 6 406 182 HOH HOH . W 10 HOH B 7 407 69 HOH HOH . W 10 HOH B 8 408 103 HOH HOH . W 10 HOH B 9 409 238 HOH HOH . W 10 HOH B 10 410 70 HOH HOH . W 10 HOH B 11 411 230 HOH HOH . W 10 HOH B 12 412 84 HOH HOH . W 10 HOH B 13 413 171 HOH HOH . W 10 HOH B 14 414 149 HOH HOH . W 10 HOH B 15 415 229 HOH HOH . W 10 HOH B 16 416 57 HOH HOH . W 10 HOH B 17 417 72 HOH HOH . W 10 HOH B 18 418 61 HOH HOH . W 10 HOH B 19 419 163 HOH HOH . W 10 HOH B 20 420 237 HOH HOH . W 10 HOH B 21 421 67 HOH HOH . W 10 HOH B 22 422 73 HOH HOH . W 10 HOH B 23 423 242 HOH HOH . W 10 HOH B 24 424 184 HOH HOH . W 10 HOH B 25 425 58 HOH HOH . W 10 HOH B 26 426 186 HOH HOH . W 10 HOH B 27 427 62 HOH HOH . W 10 HOH B 28 428 243 HOH HOH . W 10 HOH B 29 429 71 HOH HOH . W 10 HOH B 30 430 113 HOH HOH . W 10 HOH B 31 431 25 HOH HOH . W 10 HOH B 32 432 63 HOH HOH . W 10 HOH B 33 433 198 HOH HOH . W 10 HOH B 34 434 234 HOH HOH . W 10 HOH B 35 435 228 HOH HOH . W 10 HOH B 36 436 190 HOH HOH . W 10 HOH B 37 437 180 HOH HOH . W 10 HOH B 38 438 227 HOH HOH . W 10 HOH B 39 439 21 HOH HOH . W 10 HOH B 40 440 155 HOH HOH . W 10 HOH B 41 441 240 HOH HOH . W 10 HOH B 42 442 114 HOH HOH . W 10 HOH B 43 443 231 HOH HOH . W 10 HOH B 44 444 217 HOH HOH . W 10 HOH B 45 445 284 HOH HOH . W 10 HOH B 46 446 245 HOH HOH . W 10 HOH B 47 447 68 HOH HOH . W 10 HOH B 48 448 271 HOH HOH . W 10 HOH B 49 449 22 HOH HOH . W 10 HOH B 50 450 235 HOH HOH . W 10 HOH B 51 451 173 HOH HOH . W 10 HOH B 52 452 183 HOH HOH . W 10 HOH B 53 453 233 HOH HOH . W 10 HOH B 54 454 241 HOH HOH . W 10 HOH B 55 455 244 HOH HOH . W 10 HOH B 56 456 185 HOH HOH . W 10 HOH B 57 457 56 HOH HOH . W 10 HOH B 58 458 239 HOH HOH . W 10 HOH B 59 459 181 HOH HOH . W 10 HOH B 60 460 24 HOH HOH . X 10 HOH H 1 1201 262 HOH HOH . X 10 HOH H 2 1202 212 HOH HOH . X 10 HOH H 3 1203 270 HOH HOH . X 10 HOH H 4 1204 19 HOH HOH . X 10 HOH H 5 1205 124 HOH HOH . X 10 HOH H 6 1206 255 HOH HOH . X 10 HOH H 7 1207 106 HOH HOH . X 10 HOH H 8 1208 79 HOH HOH . X 10 HOH H 9 1209 248 HOH HOH . X 10 HOH H 10 1210 206 HOH HOH . X 10 HOH H 11 1211 202 HOH HOH . X 10 HOH H 12 1212 93 HOH HOH . X 10 HOH H 13 1213 89 HOH HOH . X 10 HOH H 14 1214 101 HOH HOH . X 10 HOH H 15 1215 194 HOH HOH . X 10 HOH H 16 1216 77 HOH HOH . X 10 HOH H 17 1217 121 HOH HOH . X 10 HOH H 18 1218 13 HOH HOH . X 10 HOH H 19 1219 187 HOH HOH . X 10 HOH H 20 1220 75 HOH HOH . X 10 HOH H 21 1221 111 HOH HOH . X 10 HOH H 22 1222 120 HOH HOH . X 10 HOH H 23 1223 20 HOH HOH . X 10 HOH H 24 1224 253 HOH HOH . X 10 HOH H 25 1225 203 HOH HOH . X 10 HOH H 26 1226 97 HOH HOH . X 10 HOH H 27 1227 126 HOH HOH . X 10 HOH H 28 1228 132 HOH HOH . X 10 HOH H 29 1229 148 HOH HOH . X 10 HOH H 30 1230 254 HOH HOH . X 10 HOH H 31 1231 201 HOH HOH . X 10 HOH H 32 1232 127 HOH HOH . X 10 HOH H 33 1233 162 HOH HOH . X 10 HOH H 34 1234 283 HOH HOH . X 10 HOH H 35 1235 188 HOH HOH . X 10 HOH H 36 1236 123 HOH HOH . X 10 HOH H 37 1237 165 HOH HOH . X 10 HOH H 38 1238 252 HOH HOH . X 10 HOH H 39 1239 100 HOH HOH . X 10 HOH H 40 1240 288 HOH HOH . X 10 HOH H 41 1241 15 HOH HOH . X 10 HOH H 42 1242 215 HOH HOH . X 10 HOH H 43 1243 251 HOH HOH . X 10 HOH H 44 1244 247 HOH HOH . X 10 HOH H 45 1245 108 HOH HOH . X 10 HOH H 46 1246 129 HOH HOH . X 10 HOH H 47 1247 214 HOH HOH . X 10 HOH H 48 1248 192 HOH HOH . X 10 HOH H 49 1249 133 HOH HOH . X 10 HOH H 50 1250 200 HOH HOH . X 10 HOH H 51 1251 250 HOH HOH . X 10 HOH H 52 1252 74 HOH HOH . X 10 HOH H 53 1253 96 HOH HOH . X 10 HOH H 54 1254 125 HOH HOH . Y 10 HOH L 1 401 269 HOH HOH . Y 10 HOH L 2 402 291 HOH HOH . Y 10 HOH L 3 403 159 HOH HOH . Y 10 HOH L 4 404 316 HOH HOH . Y 10 HOH L 5 405 318 HOH HOH . Y 10 HOH L 6 406 6 HOH HOH . Y 10 HOH L 7 407 92 HOH HOH . Y 10 HOH L 8 408 12 HOH HOH . Y 10 HOH L 9 409 78 HOH HOH . Y 10 HOH L 10 410 87 HOH HOH . Y 10 HOH L 11 411 16 HOH HOH . Y 10 HOH L 12 412 222 HOH HOH . Y 10 HOH L 13 413 297 HOH HOH . Y 10 HOH L 14 414 51 HOH HOH . Y 10 HOH L 15 415 135 HOH HOH . Y 10 HOH L 16 416 160 HOH HOH . Y 10 HOH L 17 417 213 HOH HOH . Y 10 HOH L 18 418 82 HOH HOH . Y 10 HOH L 19 419 131 HOH HOH . Y 10 HOH L 20 420 14 HOH HOH . Y 10 HOH L 21 421 208 HOH HOH . Y 10 HOH L 22 422 324 HOH HOH . Y 10 HOH L 23 423 115 HOH HOH . Y 10 HOH L 24 424 130 HOH HOH . Y 10 HOH L 25 425 88 HOH HOH . Y 10 HOH L 26 426 102 HOH HOH . Y 10 HOH L 27 427 90 HOH HOH . Y 10 HOH L 28 428 193 HOH HOH . Y 10 HOH L 29 429 158 HOH HOH . Y 10 HOH L 30 430 10 HOH HOH . Y 10 HOH L 31 431 7 HOH HOH . Y 10 HOH L 32 432 17 HOH HOH . Y 10 HOH L 33 433 300 HOH HOH . Y 10 HOH L 34 434 8 HOH HOH . Y 10 HOH L 35 435 122 HOH HOH . Y 10 HOH L 36 436 11 HOH HOH . Y 10 HOH L 37 437 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . M 7 -147.225 27.252 35.262 1 58.12 ? C1 PEG 309 A 1 HETATM 2 O O1 PEG . . . M 7 -148.601 27.534 35.379 1 40.32 ? O1 PEG 309 A 1 HETATM 3 C C2 PEG . . . M 7 -146.604 27.082 36.655 1 68.53 ? C2 PEG 309 A 1 HETATM 4 O O2 PEG . . . M 7 -145.249 27.464 36.647 1 62.3 ? O2 PEG 309 A 1 HETATM 5 C C3 PEG . . . M 7 -144.964 28.705 37.251 1 64 ? C3 PEG 309 A 1 HETATM 6 C C4 PEG . . . M 7 -144.186 28.519 38.561 1 61.57 ? C4 PEG 309 A 1 HETATM 7 O O4 PEG . . . M 7 -143.744 29.767 39.047 1 42.06 ? O4 PEG 309 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #