data_6XOX # _model_server_result.job_id -80rediLVrhJjbAX7C6tag _model_server_result.datetime_utc '2024-11-04 23:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6XOX # _exptl.entry_id 6XOX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 882.956 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1S,2S)-1-(5-[(4S)-2,2-dimethyloxan-4-yl]-2-{(4S)-2-(4-fluoro-3,5-dimethylphenyl)-3-[3-(4-fluoro-1-methyl-1H-indazol-5-yl)-2-oxo-2,3-dihydro-1H-imidazol-1-yl]-4-methyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl}-1H-indol-1-yl)-2-methylcyclopropyl]-1,2,4-oxadiazol-5(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XOX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 159 E CYS 147 1_555 C SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 44 N CYS 22 1_555 E SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 E SG CYS 121 N CYS 99 1_555 E SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 F SG CYS 69 R CYS 46 1_555 F SG CYS 94 R CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 F SG CYS 85 R CYS 62 1_555 F SG CYS 127 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 F SG CYS 108 R CYS 85 1_555 F SG CYS 149 R CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 249 R CYS 226 1_555 F SG CYS 319 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C48 H48 F2 N10 O5' _chem_comp.formula_weight 882.956 _chem_comp.id V6G _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1S,2S)-1-(5-[(4S)-2,2-dimethyloxan-4-yl]-2-{(4S)-2-(4-fluoro-3,5-dimethylphenyl)-3-[3-(4-fluoro-1-methyl-1H-indazol-5-yl)-2-oxo-2,3-dihydro-1H-imidazol-1-yl]-4-methyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl}-1H-indol-1-yl)-2-methylcyclopropyl]-1,2,4-oxadiazol-5(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C28 V6G sing 356 n n C10 C11 V6G sing 357 n n C10 C09 V6G sing 358 n n C17 C16 V6G sing 359 n n C17 C18 V6G sing 360 n n C14 C11 V6G sing 361 n n N05 C18 V6G doub 362 n y N05 N06 V6G sing 363 n y C11 C09 V6G sing 364 n n N02 O01 V6G sing 365 n n N02 C12 V6G doub 366 n n O03 C15 V6G doub 367 n n C28 C24 V6G doub 368 n y C28 C27 V6G sing 369 n y C16 N04 V6G sing 370 n n C24 C23 V6G sing 371 n y C18 C19 V6G sing 372 n y O01 C13 V6G sing 373 n n C09 C12 V6G sing 374 n n C09 N01 V6G sing 375 n n C12 N03 V6G sing 376 n n F01 C27 V6G sing 377 n n C27 C26 V6G doub 378 n y C15 N04 V6G sing 379 n n C15 C08 V6G sing 380 n n N06 C23 V6G sing 381 n n N06 C22 V6G sing 382 n y C23 C25 V6G doub 383 n y N04 C20 V6G sing 384 n n C13 N03 V6G sing 385 n n C13 O02 V6G doub 386 n n C19 C22 V6G doub 387 n y C19 C20 V6G sing 388 n n N01 C08 V6G sing 389 n y N01 C03 V6G sing 390 n y C26 C25 V6G sing 391 n y C26 C33 V6G sing 392 n n C08 C07 V6G doub 393 n y C22 N07 V6G sing 394 n n C20 C21 V6G sing 395 n n C03 C06 V6G doub 396 n y C03 C01 V6G sing 397 n y C07 C01 V6G sing 398 n y C06 C05 V6G sing 399 n y N07 C31 V6G sing 400 n n N07 C29 V6G sing 401 n n C01 C02 V6G doub 402 n y O04 C29 V6G doub 403 n n C31 C30 V6G doub 404 n n C29 N08 V6G sing 405 n n C05 C04 V6G doub 406 n y C02 C04 V6G sing 407 n y C30 N08 V6G sing 408 n n N08 C34 V6G sing 409 n n C04 C46 V6G sing 410 n n F02 C35 V6G sing 411 n n C34 C35 V6G doub 412 n y C34 C36 V6G sing 413 n y C35 C39 V6G sing 414 n y C42 C46 V6G sing 415 n n C42 C43 V6G sing 416 n n C46 C45 V6G sing 417 n n C36 C37 V6G doub 418 n y C39 C40 V6G sing 419 n y C39 C38 V6G doub 420 n y C45 C44 V6G sing 421 n n C43 O05 V6G sing 422 n n C40 N10 V6G doub 423 n y C37 C38 V6G sing 424 n y C38 N09 V6G sing 425 n y C44 O05 V6G sing 426 n n C44 C48 V6G sing 427 n n C44 C47 V6G sing 428 n n N10 N09 V6G sing 429 n y N09 C41 V6G sing 430 n n C02 H1 V6G sing 431 n n C05 H2 V6G sing 432 n n C06 H3 V6G sing 433 n n C07 H4 V6G sing 434 n n C10 H5 V6G sing 435 n n C10 H6 V6G sing 436 n n C11 H7 V6G sing 437 n n C14 H8 V6G sing 438 n n C14 H9 V6G sing 439 n n C14 H10 V6G sing 440 n n C16 H11 V6G sing 441 n n C16 H12 V6G sing 442 n n C17 H13 V6G sing 443 n n C17 H14 V6G sing 444 n n C20 H15 V6G sing 445 n n C21 H16 V6G sing 446 n n C21 H17 V6G sing 447 n n C21 H18 V6G sing 448 n n C24 H19 V6G sing 449 n n C25 H20 V6G sing 450 n n C30 H21 V6G sing 451 n n C31 H22 V6G sing 452 n n C32 H23 V6G sing 453 n n C32 H24 V6G sing 454 n n C32 H25 V6G sing 455 n n C33 H26 V6G sing 456 n n C33 H27 V6G sing 457 n n C33 H28 V6G sing 458 n n C36 H29 V6G sing 459 n n C37 H30 V6G sing 460 n n C40 H31 V6G sing 461 n n C41 H32 V6G sing 462 n n C41 H33 V6G sing 463 n n C41 H34 V6G sing 464 n n C42 H35 V6G sing 465 n n C42 H36 V6G sing 466 n n C43 H37 V6G sing 467 n n C43 H38 V6G sing 468 n n C45 H39 V6G sing 469 n n C45 H40 V6G sing 470 n n C46 H41 V6G sing 471 n n C47 H42 V6G sing 472 n n C47 H43 V6G sing 473 n n C47 H44 V6G sing 474 n n C48 H45 V6G sing 475 n n C48 H46 V6G sing 476 n n C48 H47 V6G sing 477 n n N03 H48 V6G sing 478 n n # _atom_sites.entry_id 6XOX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id V6G _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id V6G _pdbx_nonpoly_scheme.auth_mon_id NPA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 V6G . . . G 7 155.147 140.583 119.617 1 103.9 ? C01 V6G 501 R 1 HETATM 2 C C02 V6G . . . G 7 155.261 140.045 120.908 1 103.9 ? C02 V6G 501 R 1 HETATM 3 C C03 V6G . . . G 7 154.221 140.116 118.71 1 103.9 ? C03 V6G 501 R 1 HETATM 4 C C04 V6G . . . G 7 154.421 139.015 121.251 1 103.9 ? C04 V6G 501 R 1 HETATM 5 C C05 V6G . . . G 7 153.496 138.552 120.327 1 103.9 ? C05 V6G 501 R 1 HETATM 6 C C06 V6G . . . G 7 153.389 139.086 119.085 1 103.9 ? C06 V6G 501 R 1 HETATM 7 C C07 V6G . . . G 7 155.843 141.594 118.983 1 103.9 ? C07 V6G 501 R 1 HETATM 8 C C08 V6G . . . G 7 155.351 141.75 117.728 1 103.9 ? C08 V6G 501 R 1 HETATM 9 C C09 V6G . . . G 7 153.51 140.628 116.305 1 103.9 ? C09 V6G 501 R 1 HETATM 10 C C10 V6G . . . G 7 154.042 140.339 114.914 1 103.9 ? C10 V6G 501 R 1 HETATM 11 C C11 V6G . . . G 7 153.254 139.299 115.642 1 103.9 ? C11 V6G 501 R 1 HETATM 12 C C12 V6G . . . G 7 152.369 141.589 116.403 1 103.9 ? C12 V6G 501 R 1 HETATM 13 C C13 V6G . . . G 7 150.594 142.419 117.291 1 103.9 ? C13 V6G 501 R 1 HETATM 14 C C14 V6G . . . G 7 151.84 139.025 115.124 1 103.9 ? C14 V6G 501 R 1 HETATM 15 C C15 V6G . . . G 7 155.755 142.692 116.727 1 103.9 ? C15 V6G 501 R 1 HETATM 16 C C16 V6G . . . G 7 155.863 144.966 115.807 1 103.9 ? C16 V6G 501 R 1 HETATM 17 C C17 V6G . . . G 7 154.573 145.099 114.996 1 103.9 ? C17 V6G 501 R 1 HETATM 18 C C18 V6G . . . G 7 153.453 145.437 115.948 1 103.9 ? C18 V6G 501 R 1 HETATM 19 C C19 V6G . . . G 7 153.491 145.224 117.299 1 103.9 ? C19 V6G 501 R 1 HETATM 20 C C20 V6G . . . G 7 154.65 144.639 117.979 1 103.9 ? C20 V6G 501 R 1 HETATM 21 C C21 V6G . . . G 7 155.416 145.801 118.586 1 103.9 ? C21 V6G 501 R 1 HETATM 22 C C22 V6G . . . G 7 152.339 145.622 117.805 1 103.9 ? C22 V6G 501 R 1 HETATM 23 C C23 V6G . . . G 7 150.312 146.608 116.812 1 103.9 ? C23 V6G 501 R 1 HETATM 24 C C24 V6G . . . G 7 149.489 146.002 115.887 1 103.9 ? C24 V6G 501 R 1 HETATM 25 C C25 V6G . . . G 7 149.86 147.588 117.669 1 103.9 ? C25 V6G 501 R 1 HETATM 26 C C26 V6G . . . G 7 148.547 147.947 117.6 1 103.9 ? C26 V6G 501 R 1 HETATM 27 C C27 V6G . . . G 7 147.72 147.347 116.67 1 103.9 ? C27 V6G 501 R 1 HETATM 28 C C28 V6G . . . G 7 148.171 146.368 115.803 1 103.9 ? C28 V6G 501 R 1 HETATM 29 C C29 V6G . . . G 7 152.163 146.703 119.945 1 103.9 ? C29 V6G 501 R 1 HETATM 30 C C30 V6G . . . G 7 150.853 145.291 121.024 1 103.9 ? C30 V6G 501 R 1 HETATM 31 C C31 V6G . . . G 7 151.035 144.794 119.8 1 103.9 ? C31 V6G 501 R 1 HETATM 32 C C32 V6G . . . G 7 147.296 145.692 114.785 1 103.9 ? C32 V6G 501 R 1 HETATM 33 C C33 V6G . . . G 7 148.085 148.997 118.554 1 103.9 ? C33 V6G 501 R 1 HETATM 34 C C34 V6G . . . G 7 151.623 147.333 122.233 1 103.9 ? C34 V6G 501 R 1 HETATM 35 C C35 V6G . . . G 7 150.545 148.121 122.483 1 103.9 ? C35 V6G 501 R 1 HETATM 36 C C36 V6G . . . G 7 152.764 147.44 123.028 1 103.9 ? C36 V6G 501 R 1 HETATM 37 C C37 V6G . . . G 7 152.783 148.32 124.083 1 103.9 ? C37 V6G 501 R 1 HETATM 38 C C38 V6G . . . G 7 151.653 149.098 124.309 1 103.9 ? C38 V6G 501 R 1 HETATM 39 C C39 V6G . . . G 7 150.54 149.017 123.538 1 103.9 ? C39 V6G 501 R 1 HETATM 40 C C40 V6G . . . G 7 149.622 149.93 124.046 1 103.9 ? C40 V6G 501 R 1 HETATM 41 C C41 V6G . . . G 7 152.157 150.533 126.306 1 103.9 ? C41 V6G 501 R 1 HETATM 42 C C42 V6G . . . G 7 155.082 136.964 122.577 1 103.9 ? C42 V6G 501 R 1 HETATM 43 C C43 V6G . . . G 7 155.036 136.337 123.985 1 103.9 ? C43 V6G 501 R 1 HETATM 44 C C44 V6G . . . G 7 154.826 138.516 124.994 1 103.9 ? C44 V6G 501 R 1 HETATM 45 C C45 V6G . . . G 7 155.103 139.107 123.623 1 103.9 ? C45 V6G 501 R 1 HETATM 46 C C46 V6G . . . G 7 154.373 138.304 122.59 1 103.9 ? C46 V6G 501 R 1 HETATM 47 C C47 V6G . . . G 7 155.626 139.313 126.005 1 103.9 ? C47 V6G 501 R 1 HETATM 48 C C48 V6G . . . G 7 153.369 138.506 125.403 1 103.9 ? C48 V6G 501 R 1 HETATM 49 F F01 V6G . . . G 7 146.424 147.72 116.609 1 103.9 ? F01 V6G 501 R 1 HETATM 50 F F02 V6G . . . G 7 149.454 148.028 121.709 1 103.9 ? F02 V6G 501 R 1 HETATM 51 N N01 V6G . . . G 7 154.344 140.816 117.517 1 103.9 ? N01 V6G 501 R 1 HETATM 52 N N02 V6G . . . G 7 152.066 142.555 115.659 1 103.9 ? N02 V6G 501 R 1 HETATM 53 N N03 V6G . . . G 7 151.5 141.47 117.416 1 103.9 ? N03 V6G 501 R 1 HETATM 54 N N04 V6G . . . G 7 155.421 144.028 116.866 1 103.9 ? N04 V6G 501 R 1 HETATM 55 N N05 V6G . . . G 7 152.323 145.956 115.598 1 103.9 ? N05 V6G 501 R 1 HETATM 56 N N06 V6G . . . G 7 151.629 146.1 116.766 1 103.9 ? N06 V6G 501 R 1 HETATM 57 N N07 V6G . . . G 7 151.862 145.653 119.125 1 103.9 ? N07 V6G 501 R 1 HETATM 58 N N08 V6G . . . G 7 151.56 146.462 121.132 1 103.9 ? N08 V6G 501 R 1 HETATM 59 N N09 V6G . . . G 7 151.343 150.044 125.237 1 103.9 ? N09 V6G 501 R 1 HETATM 60 N N10 V6G . . . G 7 150.094 150.553 125.071 1 103.9 ? N10 V6G 501 R 1 HETATM 61 O O01 V6G . . . G 7 150.935 143.117 116.192 1 103.9 ? O01 V6G 501 R 1 HETATM 62 O O02 V6G . . . G 7 149.652 142.578 118.067 1 103.9 ? O02 V6G 501 R 1 HETATM 63 O O03 V6G . . . G 7 156.401 142.356 115.757 1 103.9 ? O03 V6G 501 R 1 HETATM 64 O O04 V6G . . . G 7 152.871 147.666 119.648 1 103.9 ? O04 V6G 501 R 1 HETATM 65 O O05 V6G . . . G 7 155.345 137.224 125.042 1 103.9 ? O05 V6G 501 R 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #