data_6XP9
#
_model_server_result.job_id            n3pDkO-dHN5_as5-_i1kAQ 
_model_server_result.datetime_utc      '2024-11-04 20:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xp9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6XP9 
#
_exptl.entry_id    6XP9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XP9 
_cell.length_a            85.029 
_cell.length_b            88.613 
_cell.length_c            105.86 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XP9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6XP9 
_atom_sites.fract_transf_matrix[1][1]    0.011761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 QCG A 1 501 501 QCG LG1 . 
D 3 GOL B 1 501 501 GOL GOL . 
E 2 QCG B 1 502 601 QCG LG1 . 
F 4 HOH A 1 601 136 HOH HOH . 
F 4 HOH A 2 602 34 HOH HOH . 
F 4 HOH A 3 603 115 HOH HOH . 
F 4 HOH A 4 604 15 HOH HOH . 
F 4 HOH A 5 605 1 HOH HOH . 
F 4 HOH A 6 606 10 HOH HOH . 
F 4 HOH A 7 607 110 HOH HOH . 
F 4 HOH A 8 608 20 HOH HOH . 
F 4 HOH A 9 609 13 HOH HOH . 
F 4 HOH A 10 610 25 HOH HOH . 
F 4 HOH A 11 611 3 HOH HOH . 
F 4 HOH A 12 612 94 HOH HOH . 
F 4 HOH A 13 613 2 HOH HOH . 
F 4 HOH A 14 614 35 HOH HOH . 
F 4 HOH A 15 615 8 HOH HOH . 
F 4 HOH A 16 616 7 HOH HOH . 
F 4 HOH A 17 617 101 HOH HOH . 
F 4 HOH A 18 618 32 HOH HOH . 
F 4 HOH A 19 619 22 HOH HOH . 
F 4 HOH A 20 620 55 HOH HOH . 
F 4 HOH A 21 621 9 HOH HOH . 
F 4 HOH A 22 622 102 HOH HOH . 
F 4 HOH A 23 623 28 HOH HOH . 
F 4 HOH A 24 624 127 HOH HOH . 
F 4 HOH A 25 625 14 HOH HOH . 
F 4 HOH A 26 626 24 HOH HOH . 
F 4 HOH A 27 627 53 HOH HOH . 
F 4 HOH A 28 628 108 HOH HOH . 
F 4 HOH A 29 629 161 HOH HOH . 
F 4 HOH A 30 630 164 HOH HOH . 
F 4 HOH A 31 631 33 HOH HOH . 
F 4 HOH A 32 632 42 HOH HOH . 
F 4 HOH A 33 633 30 HOH HOH . 
F 4 HOH A 34 634 118 HOH HOH . 
F 4 HOH A 35 635 5 HOH HOH . 
F 4 HOH A 36 636 111 HOH HOH . 
F 4 HOH A 37 637 38 HOH HOH . 
F 4 HOH A 38 638 146 HOH HOH . 
F 4 HOH A 39 639 23 HOH HOH . 
F 4 HOH A 40 640 152 HOH HOH . 
F 4 HOH A 41 641 96 HOH HOH . 
F 4 HOH A 42 642 128 HOH HOH . 
F 4 HOH A 43 643 149 HOH HOH . 
F 4 HOH A 44 644 39 HOH HOH . 
F 4 HOH A 45 645 156 HOH HOH . 
F 4 HOH A 46 646 31 HOH HOH . 
F 4 HOH A 47 647 133 HOH HOH . 
F 4 HOH A 48 648 122 HOH HOH . 
F 4 HOH A 49 649 21 HOH HOH . 
F 4 HOH A 50 650 29 HOH HOH . 
F 4 HOH A 51 651 104 HOH HOH . 
F 4 HOH A 52 652 27 HOH HOH . 
F 4 HOH A 53 653 130 HOH HOH . 
F 4 HOH A 54 654 61 HOH HOH . 
F 4 HOH A 55 655 107 HOH HOH . 
F 4 HOH A 56 656 103 HOH HOH . 
F 4 HOH A 57 657 168 HOH HOH . 
F 4 HOH A 58 658 16 HOH HOH . 
F 4 HOH A 59 659 154 HOH HOH . 
F 4 HOH A 60 660 158 HOH HOH . 
F 4 HOH A 61 661 11 HOH HOH . 
F 4 HOH A 62 662 12 HOH HOH . 
F 4 HOH A 63 663 160 HOH HOH . 
F 4 HOH A 64 664 113 HOH HOH . 
F 4 HOH A 65 665 19 HOH HOH . 
F 4 HOH A 66 666 91 HOH HOH . 
F 4 HOH A 67 667 116 HOH HOH . 
F 4 HOH A 68 668 6 HOH HOH . 
F 4 HOH A 69 669 166 HOH HOH . 
F 4 HOH A 70 670 134 HOH HOH . 
F 4 HOH A 71 671 167 HOH HOH . 
F 4 HOH A 72 672 17 HOH HOH . 
F 4 HOH A 73 673 26 HOH HOH . 
F 4 HOH A 74 674 37 HOH HOH . 
F 4 HOH A 75 675 165 HOH HOH . 
F 4 HOH A 76 676 131 HOH HOH . 
F 4 HOH A 77 677 36 HOH HOH . 
F 4 HOH A 78 678 137 HOH HOH . 
F 4 HOH A 79 679 153 HOH HOH . 
F 4 HOH A 80 680 144 HOH HOH . 
F 4 HOH A 81 681 18 HOH HOH . 
F 4 HOH A 82 682 69 HOH HOH . 
F 4 HOH A 83 683 124 HOH HOH . 
F 4 HOH A 84 684 135 HOH HOH . 
G 4 HOH B 1 601 99 HOH HOH . 
G 4 HOH B 2 602 82 HOH HOH . 
G 4 HOH B 3 603 65 HOH HOH . 
G 4 HOH B 4 604 47 HOH HOH . 
G 4 HOH B 5 605 40 HOH HOH . 
G 4 HOH B 6 606 60 HOH HOH . 
G 4 HOH B 7 607 46 HOH HOH . 
G 4 HOH B 8 608 97 HOH HOH . 
G 4 HOH B 9 609 86 HOH HOH . 
G 4 HOH B 10 610 75 HOH HOH . 
G 4 HOH B 11 611 76 HOH HOH . 
G 4 HOH B 12 612 59 HOH HOH . 
G 4 HOH B 13 613 88 HOH HOH . 
G 4 HOH B 14 614 98 HOH HOH . 
G 4 HOH B 15 615 41 HOH HOH . 
G 4 HOH B 16 616 106 HOH HOH . 
G 4 HOH B 17 617 62 HOH HOH . 
G 4 HOH B 18 618 63 HOH HOH . 
G 4 HOH B 19 619 100 HOH HOH . 
G 4 HOH B 20 620 90 HOH HOH . 
G 4 HOH B 21 621 64 HOH HOH . 
G 4 HOH B 22 622 120 HOH HOH . 
G 4 HOH B 23 623 92 HOH HOH . 
G 4 HOH B 24 624 84 HOH HOH . 
G 4 HOH B 25 625 95 HOH HOH . 
G 4 HOH B 26 626 71 HOH HOH . 
G 4 HOH B 27 627 79 HOH HOH . 
G 4 HOH B 28 628 150 HOH HOH . 
G 4 HOH B 29 629 114 HOH HOH . 
G 4 HOH B 30 630 83 HOH HOH . 
G 4 HOH B 31 631 109 HOH HOH . 
G 4 HOH B 32 632 145 HOH HOH . 
G 4 HOH B 33 633 66 HOH HOH . 
G 4 HOH B 34 634 72 HOH HOH . 
G 4 HOH B 35 635 44 HOH HOH . 
G 4 HOH B 36 636 70 HOH HOH . 
G 4 HOH B 37 637 52 HOH HOH . 
G 4 HOH B 38 638 85 HOH HOH . 
G 4 HOH B 39 639 129 HOH HOH . 
G 4 HOH B 40 640 87 HOH HOH . 
G 4 HOH B 41 641 48 HOH HOH . 
G 4 HOH B 42 642 68 HOH HOH . 
G 4 HOH B 43 643 119 HOH HOH . 
G 4 HOH B 44 644 73 HOH HOH . 
G 4 HOH B 45 645 74 HOH HOH . 
G 4 HOH B 46 646 56 HOH HOH . 
G 4 HOH B 47 647 147 HOH HOH . 
G 4 HOH B 48 648 89 HOH HOH . 
G 4 HOH B 49 649 67 HOH HOH . 
G 4 HOH B 50 650 58 HOH HOH . 
G 4 HOH B 51 651 126 HOH HOH . 
G 4 HOH B 52 652 43 HOH HOH . 
G 4 HOH B 53 653 159 HOH HOH . 
G 4 HOH B 54 654 112 HOH HOH . 
G 4 HOH B 55 655 77 HOH HOH . 
G 4 HOH B 56 656 4 HOH HOH . 
G 4 HOH B 57 657 141 HOH HOH . 
G 4 HOH B 58 658 80 HOH HOH . 
G 4 HOH B 59 659 117 HOH HOH . 
G 4 HOH B 60 660 139 HOH HOH . 
G 4 HOH B 61 661 49 HOH HOH . 
G 4 HOH B 62 662 54 HOH HOH . 
G 4 HOH B 63 663 155 HOH HOH . 
G 4 HOH B 64 664 81 HOH HOH . 
G 4 HOH B 65 665 78 HOH HOH . 
G 4 HOH B 66 666 121 HOH HOH . 
G 4 HOH B 67 667 45 HOH HOH . 
G 4 HOH B 68 668 57 HOH HOH . 
G 4 HOH B 69 669 151 HOH HOH . 
G 4 HOH B 70 670 143 HOH HOH . 
G 4 HOH B 71 671 51 HOH HOH . 
G 4 HOH B 72 672 50 HOH HOH . 
G 4 HOH B 73 673 148 HOH HOH . 
G 4 HOH B 74 674 125 HOH HOH . 
G 4 HOH B 75 675 138 HOH HOH . 
G 4 HOH B 76 676 162 HOH HOH . 
G 4 HOH B 77 677 93 HOH HOH . 
G 4 HOH B 78 678 157 HOH HOH . 
G 4 HOH B 79 679 163 HOH HOH . 
G 4 HOH B 80 680 140 HOH HOH . 
G 4 HOH B 81 681 132 HOH HOH . 
G 4 HOH B 82 682 142 HOH HOH . 
G 4 HOH B 83 683 123 HOH HOH . 
G 4 HOH B 84 684 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 7.01 -10.581 -6.014 1 93.65 ? C1 GOL 501 B 1 
HETATM 2 O O1 GOL . . . D 3 7.584 -11.863 -5.803 1 93.16 ? O1 GOL 501 B 1 
HETATM 3 C C2 GOL . . . D 3 5.531 -10.706 -6.301 1 94.34 ? C2 GOL 501 B 1 
HETATM 4 O O2 GOL . . . D 3 4.942 -9.411 -6.397 1 94.23 ? O2 GOL 501 B 1 
HETATM 5 C C3 GOL . . . D 3 5.278 -11.469 -7.58 1 94.98 ? C3 GOL 501 B 1 
HETATM 6 O O3 GOL . . . D 3 5.691 -10.702 -8.701 1 95.34 ? O3 GOL 501 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#