data_6XQ6
#
_model_server_result.job_id            m8vcYJFdd85nq8gWROAlxw 
_model_server_result.datetime_utc      '2024-10-20 22:19:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":305}' 
#
_entry.id    6XQ6 
#
_exptl.entry_id    6XQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.207 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            3-phenoxyphenol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XQ6 
_cell.length_a            101.376 
_cell.length_b            101.376 
_cell.length_c            104.025 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    'P 62' 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,O 1 1,3 
B,J,K,L,M,N,P 1 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_454 -y-1,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -101.376 0 -34.675 
3 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -101.376 0 0 
4 'crystal symmetry operation' 5_554 y,-x+y,z-1/3 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -34.675 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 19 A CYS 38 1_555 A SG CYS 80 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf2 A SG CYS 125 A CYS 144 1_555 A SG CYS 189 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 B SG CYS 19 B CYS 38 1_555 B SG CYS 80 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
disulf ? disulf4 B SG CYS 125 B CYS 144 1_555 B SG CYS 189 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C12 H10 O2' 
_chem_comp.formula_weight    186.207 
_chem_comp.id                V6P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-phenoxyphenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O06 C04 V6P sing 364 n n 
C04 C09 V6P doub 365 n y 
C04 C01 V6P sing 366 n y 
C09 C07 V6P sing 367 n y 
C13 C14 V6P doub 368 n y 
C13 C10 V6P sing 369 n y 
C01 C02 V6P doub 370 n y 
C14 C12 V6P sing 371 n y 
C10 C05 V6P doub 372 n y 
C12 C11 V6P doub 373 n y 
C07 C08 V6P doub 374 n y 
C02 C08 V6P sing 375 n y 
C02 O03 V6P sing 376 n n 
C05 C11 V6P sing 377 n y 
C05 O03 V6P sing 378 n n 
C01 H1 V6P sing 379 n n 
C07 H2 V6P sing 380 n n 
C08 H3 V6P sing 381 n n 
C09 H4 V6P sing 382 n n 
C10 H5 V6P sing 383 n n 
C11 H6 V6P sing 384 n n 
C12 H7 V6P sing 385 n n 
C13 H8 V6P sing 386 n n 
C14 H9 V6P sing 387 n n 
O06 H10 V6P sing 388 n n 
#
_atom_sites.entry_id                     6XQ6 
_atom_sites.fract_transf_matrix[1][1]    0.009864 
_atom_sites.fract_transf_matrix[1][2]    0.005695 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01139 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 301 1 ACT ACT . 
D 2 ACT A 1 302 2 ACT ACT . 
E 2 ACT A 1 303 6 ACT ACT . 
F 2 ACT A 1 304 7 ACT ACT . 
G 3 CL A 1 305 1 CL CL . 
H 4 V6P A 1 306 301 V6P XYZ . 
I 4 V6P A 1 307 303 V6P XYZ . 
J 2 ACT B 1 301 3 ACT ACT . 
K 2 ACT B 1 302 4 ACT ACT . 
L 2 ACT B 1 303 5 ACT ACT . 
M 3 CL B 1 304 2 CL CL . 
N 4 V6P B 1 305 302 V6P XYZ . 
O 5 HOH A 1 401 124 HOH HOH . 
O 5 HOH A 2 402 115 HOH HOH . 
O 5 HOH A 3 403 145 HOH HOH . 
O 5 HOH A 4 404 93 HOH HOH . 
O 5 HOH A 5 405 182 HOH HOH . 
O 5 HOH A 6 406 17 HOH HOH . 
O 5 HOH A 7 407 9 HOH HOH . 
O 5 HOH A 8 408 165 HOH HOH . 
O 5 HOH A 9 409 144 HOH HOH . 
O 5 HOH A 10 410 116 HOH HOH . 
O 5 HOH A 11 411 117 HOH HOH . 
O 5 HOH A 12 412 132 HOH HOH . 
O 5 HOH A 13 413 171 HOH HOH . 
O 5 HOH A 14 414 178 HOH HOH . 
O 5 HOH A 15 415 13 HOH HOH . 
O 5 HOH A 16 416 83 HOH HOH . 
O 5 HOH A 17 417 186 HOH HOH . 
O 5 HOH A 18 418 55 HOH HOH . 
O 5 HOH A 19 419 46 HOH HOH . 
O 5 HOH A 20 420 20 HOH HOH . 
O 5 HOH A 21 421 78 HOH HOH . 
O 5 HOH A 22 422 74 HOH HOH . 
O 5 HOH A 23 423 131 HOH HOH . 
O 5 HOH A 24 424 27 HOH HOH . 
O 5 HOH A 25 425 51 HOH HOH . 
O 5 HOH A 26 426 8 HOH HOH . 
O 5 HOH A 27 427 89 HOH HOH . 
O 5 HOH A 28 428 150 HOH HOH . 
O 5 HOH A 29 429 71 HOH HOH . 
O 5 HOH A 30 430 25 HOH HOH . 
O 5 HOH A 31 431 60 HOH HOH . 
O 5 HOH A 32 432 114 HOH HOH . 
O 5 HOH A 33 433 38 HOH HOH . 
O 5 HOH A 34 434 28 HOH HOH . 
O 5 HOH A 35 435 49 HOH HOH . 
O 5 HOH A 36 436 12 HOH HOH . 
O 5 HOH A 37 437 174 HOH HOH . 
O 5 HOH A 38 438 167 HOH HOH . 
O 5 HOH A 39 439 154 HOH HOH . 
O 5 HOH A 40 440 37 HOH HOH . 
O 5 HOH A 41 441 59 HOH HOH . 
O 5 HOH A 42 442 187 HOH HOH . 
O 5 HOH A 43 443 18 HOH HOH . 
O 5 HOH A 44 444 122 HOH HOH . 
O 5 HOH A 45 445 34 HOH HOH . 
O 5 HOH A 46 446 26 HOH HOH . 
O 5 HOH A 47 447 69 HOH HOH . 
O 5 HOH A 48 448 192 HOH HOH . 
O 5 HOH A 49 449 81 HOH HOH . 
O 5 HOH A 50 450 120 HOH HOH . 
O 5 HOH A 51 451 48 HOH HOH . 
O 5 HOH A 52 452 44 HOH HOH . 
O 5 HOH A 53 453 129 HOH HOH . 
O 5 HOH A 54 454 169 HOH HOH . 
O 5 HOH A 55 455 6 HOH HOH . 
O 5 HOH A 56 456 121 HOH HOH . 
O 5 HOH A 57 457 53 HOH HOH . 
O 5 HOH A 58 458 58 HOH HOH . 
O 5 HOH A 59 459 91 HOH HOH . 
O 5 HOH A 60 460 88 HOH HOH . 
O 5 HOH A 61 461 172 HOH HOH . 
O 5 HOH A 62 462 166 HOH HOH . 
O 5 HOH A 63 463 134 HOH HOH . 
O 5 HOH A 64 464 24 HOH HOH . 
O 5 HOH A 65 465 112 HOH HOH . 
O 5 HOH A 66 466 10 HOH HOH . 
O 5 HOH A 67 467 143 HOH HOH . 
O 5 HOH A 68 468 86 HOH HOH . 
O 5 HOH A 69 469 126 HOH HOH . 
O 5 HOH A 70 470 127 HOH HOH . 
O 5 HOH A 71 471 33 HOH HOH . 
O 5 HOH A 72 472 110 HOH HOH . 
O 5 HOH A 73 473 111 HOH HOH . 
O 5 HOH A 74 474 76 HOH HOH . 
O 5 HOH A 75 475 125 HOH HOH . 
O 5 HOH A 76 476 128 HOH HOH . 
O 5 HOH A 77 477 113 HOH HOH . 
O 5 HOH A 78 478 147 HOH HOH . 
O 5 HOH A 79 479 7 HOH HOH . 
O 5 HOH A 80 480 153 HOH HOH . 
O 5 HOH A 81 481 170 HOH HOH . 
O 5 HOH A 82 482 177 HOH HOH . 
O 5 HOH A 83 483 181 HOH HOH . 
O 5 HOH A 84 484 152 HOH HOH . 
O 5 HOH A 85 485 151 HOH HOH . 
O 5 HOH A 86 486 179 HOH HOH . 
O 5 HOH A 87 487 160 HOH HOH . 
O 5 HOH A 88 488 162 HOH HOH . 
O 5 HOH A 89 489 191 HOH HOH . 
O 5 HOH A 90 490 185 HOH HOH . 
O 5 HOH A 91 491 77 HOH HOH . 
O 5 HOH A 92 492 164 HOH HOH . 
O 5 HOH A 93 493 54 HOH HOH . 
O 5 HOH A 94 494 90 HOH HOH . 
O 5 HOH A 95 495 103 HOH HOH . 
O 5 HOH A 96 496 21 HOH HOH . 
O 5 HOH A 97 497 79 HOH HOH . 
P 5 HOH B 1 401 104 HOH HOH . 
P 5 HOH B 2 402 94 HOH HOH . 
P 5 HOH B 3 403 1 HOH HOH . 
P 5 HOH B 4 404 183 HOH HOH . 
P 5 HOH B 5 405 133 HOH HOH . 
P 5 HOH B 6 406 142 HOH HOH . 
P 5 HOH B 7 407 84 HOH HOH . 
P 5 HOH B 8 408 102 HOH HOH . 
P 5 HOH B 9 409 106 HOH HOH . 
P 5 HOH B 10 410 15 HOH HOH . 
P 5 HOH B 11 411 109 HOH HOH . 
P 5 HOH B 12 412 36 HOH HOH . 
P 5 HOH B 13 413 155 HOH HOH . 
P 5 HOH B 14 414 85 HOH HOH . 
P 5 HOH B 15 415 146 HOH HOH . 
P 5 HOH B 16 416 189 HOH HOH . 
P 5 HOH B 17 417 61 HOH HOH . 
P 5 HOH B 18 418 159 HOH HOH . 
P 5 HOH B 19 419 56 HOH HOH . 
P 5 HOH B 20 420 47 HOH HOH . 
P 5 HOH B 21 421 45 HOH HOH . 
P 5 HOH B 22 422 99 HOH HOH . 
P 5 HOH B 23 423 2 HOH HOH . 
P 5 HOH B 24 424 65 HOH HOH . 
P 5 HOH B 25 425 57 HOH HOH . 
P 5 HOH B 26 426 163 HOH HOH . 
P 5 HOH B 27 427 158 HOH HOH . 
P 5 HOH B 28 428 40 HOH HOH . 
P 5 HOH B 29 429 188 HOH HOH . 
P 5 HOH B 30 430 41 HOH HOH . 
P 5 HOH B 31 431 62 HOH HOH . 
P 5 HOH B 32 432 82 HOH HOH . 
P 5 HOH B 33 433 105 HOH HOH . 
P 5 HOH B 34 434 168 HOH HOH . 
P 5 HOH B 35 435 107 HOH HOH . 
P 5 HOH B 36 436 23 HOH HOH . 
P 5 HOH B 37 437 175 HOH HOH . 
P 5 HOH B 38 438 31 HOH HOH . 
P 5 HOH B 39 439 29 HOH HOH . 
P 5 HOH B 40 440 139 HOH HOH . 
P 5 HOH B 41 441 180 HOH HOH . 
P 5 HOH B 42 442 11 HOH HOH . 
P 5 HOH B 43 443 43 HOH HOH . 
P 5 HOH B 44 444 39 HOH HOH . 
P 5 HOH B 45 445 70 HOH HOH . 
P 5 HOH B 46 446 50 HOH HOH . 
P 5 HOH B 47 447 75 HOH HOH . 
P 5 HOH B 48 448 96 HOH HOH . 
P 5 HOH B 49 449 97 HOH HOH . 
P 5 HOH B 50 450 5 HOH HOH . 
P 5 HOH B 51 451 98 HOH HOH . 
P 5 HOH B 52 452 19 HOH HOH . 
P 5 HOH B 53 453 22 HOH HOH . 
P 5 HOH B 54 454 176 HOH HOH . 
P 5 HOH B 55 455 32 HOH HOH . 
P 5 HOH B 56 456 157 HOH HOH . 
P 5 HOH B 57 457 72 HOH HOH . 
P 5 HOH B 58 458 108 HOH HOH . 
P 5 HOH B 59 459 35 HOH HOH . 
P 5 HOH B 60 460 67 HOH HOH . 
P 5 HOH B 61 461 64 HOH HOH . 
P 5 HOH B 62 462 194 HOH HOH . 
P 5 HOH B 63 463 193 HOH HOH . 
P 5 HOH B 64 464 92 HOH HOH . 
P 5 HOH B 65 465 14 HOH HOH . 
P 5 HOH B 66 466 87 HOH HOH . 
P 5 HOH B 67 467 16 HOH HOH . 
P 5 HOH B 68 468 135 HOH HOH . 
P 5 HOH B 69 469 136 HOH HOH . 
P 5 HOH B 70 470 123 HOH HOH . 
P 5 HOH B 71 471 30 HOH HOH . 
P 5 HOH B 72 472 130 HOH HOH . 
P 5 HOH B 73 473 68 HOH HOH . 
P 5 HOH B 74 474 101 HOH HOH . 
P 5 HOH B 75 475 73 HOH HOH . 
P 5 HOH B 76 476 42 HOH HOH . 
P 5 HOH B 77 477 161 HOH HOH . 
P 5 HOH B 78 478 3 HOH HOH . 
P 5 HOH B 79 479 148 HOH HOH . 
P 5 HOH B 80 480 95 HOH HOH . 
P 5 HOH B 81 481 173 HOH HOH . 
P 5 HOH B 82 482 156 HOH HOH . 
P 5 HOH B 83 483 66 HOH HOH . 
P 5 HOH B 84 484 190 HOH HOH . 
P 5 HOH B 85 485 140 HOH HOH . 
P 5 HOH B 86 486 141 HOH HOH . 
P 5 HOH B 87 487 149 HOH HOH . 
P 5 HOH B 88 488 80 HOH HOH . 
P 5 HOH B 89 489 137 HOH HOH . 
P 5 HOH B 90 490 184 HOH HOH . 
P 5 HOH B 91 491 138 HOH HOH . 
P 5 HOH B 92 492 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 V6P . . . N 4 -34.126 -40.424 4.922 0.74 72.38 ? C01 V6P 305 B 1 
HETATM 2 C C02 V6P . . . N 4 -34.58 -39.658 6.003 0.74 66.52 ? C02 V6P 305 B 1 
HETATM 3 C C04 V6P . . . N 4 -34.952 -40.664 3.816 0.74 74.08 ? C04 V6P 305 B 1 
HETATM 4 C C05 V6P . . . N 4 -32.388 -39.311 6.855 0.74 62.03 ? C05 V6P 305 B 1 
HETATM 5 C C07 V6P . . . N 4 -36.694 -39.385 4.861 0.74 73.47 ? C07 V6P 305 B 1 
HETATM 6 C C08 V6P . . . N 4 -35.875 -39.143 5.964 0.74 67.74 ? C08 V6P 305 B 1 
HETATM 7 C C09 V6P . . . N 4 -36.236 -40.145 3.787 0.74 68.88 ? C09 V6P 305 B 1 
HETATM 8 C C10 V6P . . . N 4 -31.871 -38.309 6.048 0.74 47.37 ? C10 V6P 305 B 1 
HETATM 9 C C11 V6P . . . N 4 -31.496 -40.236 7.396 0.74 68.09 ? C11 V6P 305 B 1 
HETATM 10 C C12 V6P . . . N 4 -30.132 -40.153 7.123 0.74 68.48 ? C12 V6P 305 B 1 
HETATM 11 C C13 V6P . . . N 4 -30.511 -38.236 5.768 0.74 53.08 ? C13 V6P 305 B 1 
HETATM 12 C C14 V6P . . . N 4 -29.626 -39.152 6.305 0.74 52 ? C14 V6P 305 B 1 
HETATM 13 O O03 V6P . . . N 4 -33.776 -39.389 7.134 0.74 54.1 ? O03 V6P 305 B 1 
HETATM 14 O O06 V6P . . . N 4 -34.507 -41.424 2.727 0.74 71.27 ? O06 V6P 305 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           50 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#