data_6XQ7 # _model_server_result.job_id 2Y0Q4Hlqhokzz4PteUGZeQ _model_server_result.datetime_utc '2024-11-29 17:57:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":309}' # _entry.id 6XQ7 # _exptl.entry_id 6XQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.08 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-bromo-3-methyl-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XQ7 _cell.length_a 102.905 _cell.length_b 102.905 _cell.length_c 101.769 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall 'P 62' _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,J,K,L,M,N,O,P,Q,R,S,T,V 1 1,3 A,C,D,E,F,G,H,I,U 1 2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+y+1,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 102.905 0 33.923 3 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 102.905 0 0 4 'crystal symmetry operation' 6_555 x-y,x,z+1/3 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 33.923 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 38 1_555 A SG CYS 80 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 125 A CYS 144 1_555 A SG CYS 189 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 19 B CYS 38 1_555 B SG CYS 80 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 125 B CYS 144 1_555 B SG CYS 189 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H8 Br N O2' _chem_comp.formula_weight 254.08 _chem_comp.id V6V _chem_comp.mon_nstd_flag . _chem_comp.name '5-bromo-3-methyl-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR14 C06 V6V sing 364 n n C06 C05 V6V doub 365 n y C06 C01 V6V sing 366 n y C05 C04 V6V sing 367 n y C01 C02 V6V doub 368 n y C04 C09 V6V sing 369 n y C04 C03 V6V doub 370 n y C10 C09 V6V sing 371 n n C02 C03 V6V sing 372 n y C09 C08 V6V doub 373 n y C03 N07 V6V sing 374 n y N07 C08 V6V sing 375 n y C08 C11 V6V sing 376 n n O12 C11 V6V doub 377 n n C11 O13 V6V sing 378 n n C10 H1 V6V sing 379 n n C10 H2 V6V sing 380 n n C10 H3 V6V sing 381 n n C01 H4 V6V sing 382 n n C02 H5 V6V sing 383 n n C05 H6 V6V sing 384 n n N07 H7 V6V sing 385 n n O13 H8 V6V sing 386 n n # _atom_sites.entry_id 6XQ7 _atom_sites.fract_transf_matrix[1][1] 0.009718 _atom_sites.fract_transf_matrix[1][2] 0.005611 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 301 1 ACT ACT . D 2 ACT A 1 302 3 ACT ACT . E 2 ACT A 1 303 4 ACT ACT . F 2 ACT A 1 304 7 ACT ACT . G 2 ACT A 1 305 11 ACT ACT . H 3 V6V A 1 306 2 V6V LIG . I 3 V6V A 1 307 9 V6V LIG . J 2 ACT B 1 301 2 ACT ACT . K 2 ACT B 1 302 5 ACT ACT . L 2 ACT B 1 303 8 ACT ACT . M 2 ACT B 1 304 12 ACT ACT . N 4 CL B 1 305 1 CL CL . O 4 CL B 1 306 2 CL CL . P 3 V6V B 1 307 1 V6V LIG . Q 3 V6V B 1 308 5 V6V LIG . R 3 V6V B 1 309 8 V6V LIG . S 3 V6V B 1 310 10 V6V LIG . T 3 V6V B 1 311 11 V6V LIG . U 5 HOH A 1 401 201 HOH HOH . U 5 HOH A 2 402 212 HOH HOH . U 5 HOH A 3 403 161 HOH HOH . U 5 HOH A 4 404 211 HOH HOH . U 5 HOH A 5 405 146 HOH HOH . U 5 HOH A 6 406 117 HOH HOH . U 5 HOH A 7 407 206 HOH HOH . U 5 HOH A 8 408 207 HOH HOH . U 5 HOH A 9 409 19 HOH HOH . U 5 HOH A 10 410 84 HOH HOH . U 5 HOH A 11 411 76 HOH HOH . U 5 HOH A 12 412 127 HOH HOH . U 5 HOH A 13 413 23 HOH HOH . U 5 HOH A 14 414 174 HOH HOH . U 5 HOH A 15 415 179 HOH HOH . U 5 HOH A 16 416 132 HOH HOH . U 5 HOH A 17 417 33 HOH HOH . U 5 HOH A 18 418 112 HOH HOH . U 5 HOH A 19 419 165 HOH HOH . U 5 HOH A 20 420 135 HOH HOH . U 5 HOH A 21 421 67 HOH HOH . U 5 HOH A 22 422 58 HOH HOH . U 5 HOH A 23 423 16 HOH HOH . U 5 HOH A 24 424 21 HOH HOH . U 5 HOH A 25 425 90 HOH HOH . U 5 HOH A 26 426 64 HOH HOH . U 5 HOH A 27 427 30 HOH HOH . U 5 HOH A 28 428 62 HOH HOH . U 5 HOH A 29 429 13 HOH HOH . U 5 HOH A 30 430 103 HOH HOH . U 5 HOH A 31 431 123 HOH HOH . U 5 HOH A 32 432 51 HOH HOH . U 5 HOH A 33 433 178 HOH HOH . U 5 HOH A 34 434 17 HOH HOH . U 5 HOH A 35 435 80 HOH HOH . U 5 HOH A 36 436 18 HOH HOH . U 5 HOH A 37 437 38 HOH HOH . U 5 HOH A 38 438 185 HOH HOH . U 5 HOH A 39 439 81 HOH HOH . U 5 HOH A 40 440 172 HOH HOH . U 5 HOH A 41 441 225 HOH HOH . U 5 HOH A 42 442 203 HOH HOH . U 5 HOH A 43 443 32 HOH HOH . U 5 HOH A 44 444 180 HOH HOH . U 5 HOH A 45 445 91 HOH HOH . U 5 HOH A 46 446 202 HOH HOH . U 5 HOH A 47 447 60 HOH HOH . U 5 HOH A 48 448 205 HOH HOH . U 5 HOH A 49 449 105 HOH HOH . U 5 HOH A 50 450 59 HOH HOH . U 5 HOH A 51 451 11 HOH HOH . U 5 HOH A 52 452 24 HOH HOH . U 5 HOH A 53 453 57 HOH HOH . U 5 HOH A 54 454 25 HOH HOH . U 5 HOH A 55 455 65 HOH HOH . U 5 HOH A 56 456 42 HOH HOH . U 5 HOH A 57 457 93 HOH HOH . U 5 HOH A 58 458 142 HOH HOH . U 5 HOH A 59 459 143 HOH HOH . U 5 HOH A 60 460 150 HOH HOH . U 5 HOH A 61 461 8 HOH HOH . U 5 HOH A 62 462 71 HOH HOH . U 5 HOH A 63 463 102 HOH HOH . U 5 HOH A 64 464 107 HOH HOH . U 5 HOH A 65 465 45 HOH HOH . U 5 HOH A 66 466 72 HOH HOH . U 5 HOH A 67 467 44 HOH HOH . U 5 HOH A 68 468 124 HOH HOH . U 5 HOH A 69 469 133 HOH HOH . U 5 HOH A 70 470 92 HOH HOH . U 5 HOH A 71 471 52 HOH HOH . U 5 HOH A 72 472 96 HOH HOH . U 5 HOH A 73 473 167 HOH HOH . U 5 HOH A 74 474 55 HOH HOH . U 5 HOH A 75 475 136 HOH HOH . U 5 HOH A 76 476 40 HOH HOH . U 5 HOH A 77 477 74 HOH HOH . U 5 HOH A 78 478 89 HOH HOH . U 5 HOH A 79 479 28 HOH HOH . U 5 HOH A 80 480 197 HOH HOH . U 5 HOH A 81 481 204 HOH HOH . U 5 HOH A 82 482 120 HOH HOH . U 5 HOH A 83 483 7 HOH HOH . U 5 HOH A 84 484 173 HOH HOH . U 5 HOH A 85 485 85 HOH HOH . U 5 HOH A 86 486 131 HOH HOH . U 5 HOH A 87 487 130 HOH HOH . U 5 HOH A 88 488 144 HOH HOH . U 5 HOH A 89 489 184 HOH HOH . U 5 HOH A 90 490 78 HOH HOH . U 5 HOH A 91 491 226 HOH HOH . U 5 HOH A 92 492 191 HOH HOH . U 5 HOH A 93 493 158 HOH HOH . U 5 HOH A 94 494 43 HOH HOH . U 5 HOH A 95 495 209 HOH HOH . U 5 HOH A 96 496 189 HOH HOH . U 5 HOH A 97 497 154 HOH HOH . U 5 HOH A 98 498 188 HOH HOH . U 5 HOH A 99 499 121 HOH HOH . U 5 HOH A 100 500 213 HOH HOH . U 5 HOH A 101 501 48 HOH HOH . U 5 HOH A 102 502 139 HOH HOH . U 5 HOH A 103 503 183 HOH HOH . U 5 HOH A 104 504 147 HOH HOH . U 5 HOH A 105 505 192 HOH HOH . U 5 HOH A 106 506 159 HOH HOH . U 5 HOH A 107 507 156 HOH HOH . U 5 HOH A 108 508 210 HOH HOH . U 5 HOH A 109 509 137 HOH HOH . U 5 HOH A 110 510 176 HOH HOH . U 5 HOH A 111 511 153 HOH HOH . U 5 HOH A 112 512 200 HOH HOH . U 5 HOH A 113 513 208 HOH HOH . U 5 HOH A 114 514 196 HOH HOH . U 5 HOH A 115 515 195 HOH HOH . V 5 HOH B 1 401 77 HOH HOH . V 5 HOH B 2 402 160 HOH HOH . V 5 HOH B 3 403 140 HOH HOH . V 5 HOH B 4 404 227 HOH HOH . V 5 HOH B 5 405 113 HOH HOH . V 5 HOH B 6 406 75 HOH HOH . V 5 HOH B 7 407 100 HOH HOH . V 5 HOH B 8 408 15 HOH HOH . V 5 HOH B 9 409 83 HOH HOH . V 5 HOH B 10 410 106 HOH HOH . V 5 HOH B 11 411 108 HOH HOH . V 5 HOH B 12 412 116 HOH HOH . V 5 HOH B 13 413 14 HOH HOH . V 5 HOH B 14 414 20 HOH HOH . V 5 HOH B 15 415 175 HOH HOH . V 5 HOH B 16 416 22 HOH HOH . V 5 HOH B 17 417 148 HOH HOH . V 5 HOH B 18 418 46 HOH HOH . V 5 HOH B 19 419 171 HOH HOH . V 5 HOH B 20 420 125 HOH HOH . V 5 HOH B 21 421 12 HOH HOH . V 5 HOH B 22 422 119 HOH HOH . V 5 HOH B 23 423 166 HOH HOH . V 5 HOH B 24 424 170 HOH HOH . V 5 HOH B 25 425 31 HOH HOH . V 5 HOH B 26 426 216 HOH HOH . V 5 HOH B 27 427 97 HOH HOH . V 5 HOH B 28 428 86 HOH HOH . V 5 HOH B 29 429 70 HOH HOH . V 5 HOH B 30 430 217 HOH HOH . V 5 HOH B 31 431 10 HOH HOH . V 5 HOH B 32 432 94 HOH HOH . V 5 HOH B 33 433 95 HOH HOH . V 5 HOH B 34 434 104 HOH HOH . V 5 HOH B 35 435 6 HOH HOH . V 5 HOH B 36 436 68 HOH HOH . V 5 HOH B 37 437 218 HOH HOH . V 5 HOH B 38 438 162 HOH HOH . V 5 HOH B 39 439 177 HOH HOH . V 5 HOH B 40 440 39 HOH HOH . V 5 HOH B 41 441 54 HOH HOH . V 5 HOH B 42 442 145 HOH HOH . V 5 HOH B 43 443 41 HOH HOH . V 5 HOH B 44 444 223 HOH HOH . V 5 HOH B 45 445 101 HOH HOH . V 5 HOH B 46 446 34 HOH HOH . V 5 HOH B 47 447 194 HOH HOH . V 5 HOH B 48 448 26 HOH HOH . V 5 HOH B 49 449 111 HOH HOH . V 5 HOH B 50 450 141 HOH HOH . V 5 HOH B 51 451 115 HOH HOH . V 5 HOH B 52 452 50 HOH HOH . V 5 HOH B 53 453 73 HOH HOH . V 5 HOH B 54 454 63 HOH HOH . V 5 HOH B 55 455 36 HOH HOH . V 5 HOH B 56 456 118 HOH HOH . V 5 HOH B 57 457 49 HOH HOH . V 5 HOH B 58 458 66 HOH HOH . V 5 HOH B 59 459 88 HOH HOH . V 5 HOH B 60 460 4 HOH HOH . V 5 HOH B 61 461 37 HOH HOH . V 5 HOH B 62 462 9 HOH HOH . V 5 HOH B 63 463 61 HOH HOH . V 5 HOH B 64 464 27 HOH HOH . V 5 HOH B 65 465 114 HOH HOH . V 5 HOH B 66 466 56 HOH HOH . V 5 HOH B 67 467 99 HOH HOH . V 5 HOH B 68 468 110 HOH HOH . V 5 HOH B 69 469 169 HOH HOH . V 5 HOH B 70 470 134 HOH HOH . V 5 HOH B 71 471 129 HOH HOH . V 5 HOH B 72 472 53 HOH HOH . V 5 HOH B 73 473 215 HOH HOH . V 5 HOH B 74 474 82 HOH HOH . V 5 HOH B 75 475 138 HOH HOH . V 5 HOH B 76 476 109 HOH HOH . V 5 HOH B 77 477 221 HOH HOH . V 5 HOH B 78 478 47 HOH HOH . V 5 HOH B 79 479 3 HOH HOH . V 5 HOH B 80 480 168 HOH HOH . V 5 HOH B 81 481 122 HOH HOH . V 5 HOH B 82 482 228 HOH HOH . V 5 HOH B 83 483 87 HOH HOH . V 5 HOH B 84 484 181 HOH HOH . V 5 HOH B 85 485 187 HOH HOH . V 5 HOH B 86 486 222 HOH HOH . V 5 HOH B 87 487 155 HOH HOH . V 5 HOH B 88 488 126 HOH HOH . V 5 HOH B 89 489 35 HOH HOH . V 5 HOH B 90 490 157 HOH HOH . V 5 HOH B 91 491 186 HOH HOH . V 5 HOH B 92 492 98 HOH HOH . V 5 HOH B 93 493 29 HOH HOH . V 5 HOH B 94 494 198 HOH HOH . V 5 HOH B 95 495 152 HOH HOH . V 5 HOH B 96 496 149 HOH HOH . V 5 HOH B 97 497 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 V6V . . . R 3 47.438 -10.403 4.042 0.65 28.45 ? C10 V6V 309 B 1 HETATM 2 C C01 V6V . . . R 3 47.848 -11.769 9.365 0.65 17.27 ? C01 V6V 309 B 1 HETATM 3 C C02 V6V . . . R 3 47.934 -12.958 8.465 0.65 18.82 ? C02 V6V 309 B 1 HETATM 4 C C03 V6V . . . R 3 47.795 -12.739 6.91 0.65 20.1 ? C03 V6V 309 B 1 HETATM 5 C C04 V6V . . . R 3 47.672 -11.472 6.346 0.65 27.08 ? C04 V6V 309 B 1 HETATM 6 C C05 V6V . . . R 3 47.623 -10.207 7.247 0.65 22.94 ? C05 V6V 309 B 1 HETATM 7 C C06 V6V . . . R 3 47.745 -10.439 8.696 0.65 26.98 ? C06 V6V 309 B 1 HETATM 8 C C08 V6V . . . R 3 47.626 -12.96 4.718 0.65 18.67 ? C08 V6V 309 B 1 HETATM 9 C C09 V6V . . . R 3 47.588 -11.597 4.991 0.65 24.37 ? C09 V6V 309 B 1 HETATM 10 C C11 V6V . . . R 3 47.595 -13.616 3.359 0.65 30.39 ? C11 V6V 309 B 1 HETATM 11 N N07 V6V . . . R 3 47.78 -13.659 5.893 0.65 21.53 ? N07 V6V 309 B 1 HETATM 12 O O12 V6V . . . R 3 47.854 -12.875 2.36 0.65 32.26 ? O12 V6V 309 B 1 HETATM 13 O O13 V6V . . . R 3 47.347 -14.857 3.324 0.65 27.67 ? O13 V6V 309 B 1 HETATM 14 BR BR14 V6V . . . R 3 47.722 -8.876 9.756 0.65 34.26 ? BR14 V6V 309 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 91 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 1235 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 14 #