data_6XQ8 # _model_server_result.job_id 1m-IPpZXxZZIOoWTkav5Gg _model_server_result.datetime_utc '2024-11-22 20:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":305}' # _entry.id 6XQ8 # _exptl.entry_id 6XQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.28 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '7-methyl-3-phenyl-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XQ8 _cell.length_a 102.017 _cell.length_b 102.017 _cell.length_c 102.779 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall 'P 62' _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1,3 B,J,K,L,M,N,O,Q 1 2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_544 -y,x-y-1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 51.0085 -88.349314 -34.259667 3 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 51.0085 -88.349314 0 4 'crystal symmetry operation' 5_554 y,-x+y,z-1/3 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -34.259667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 38 1_555 A SG CYS 80 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf2 A SG CYS 125 A CYS 144 1_555 A SG CYS 189 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 19 B CYS 38 1_555 B SG CYS 80 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf4 B SG CYS 125 B CYS 144 1_555 B SG CYS 189 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C16 H13 N O2' _chem_comp.formula_weight 251.28 _chem_comp.id V6M _chem_comp.mon_nstd_flag . _chem_comp.name '7-methyl-3-phenyl-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C08 V6M sing 364 n n C13 C08 V6M doub 365 n y C13 C12 V6M sing 366 n y C08 C05 V6M sing 367 n y C12 C11 V6M doub 368 n y C05 N02 V6M sing 369 n y C05 C04 V6M doub 370 n y O10 C06 V6M doub 371 n n N02 C01 V6M sing 372 n y C16 C17 V6M doub 373 n y C16 C07 V6M sing 374 n y C11 C04 V6M sing 375 n y C04 C03 V6M sing 376 n y C01 C03 V6M doub 377 n y C01 C06 V6M sing 378 n n C17 C19 V6M sing 379 n y C03 C07 V6M sing 380 n n C06 O09 V6M sing 381 n n C07 C15 V6M doub 382 n y C19 C18 V6M doub 383 n y C15 C18 V6M sing 384 n y C11 H1 V6M sing 385 n n C12 H2 V6M sing 386 n n C13 H3 V6M sing 387 n n C14 H4 V6M sing 388 n n C14 H5 V6M sing 389 n n C14 H6 V6M sing 390 n n C15 H7 V6M sing 391 n n C16 H8 V6M sing 392 n n C17 H9 V6M sing 393 n n C18 H10 V6M sing 394 n n C19 H11 V6M sing 395 n n N02 H12 V6M sing 396 n n O09 H13 V6M sing 397 n n # _atom_sites.entry_id 6XQ8 _atom_sites.fract_transf_matrix[1][1] 0.009802 _atom_sites.fract_transf_matrix[1][2] 0.005659 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 301 1 ACT ACT . D 2 ACT A 1 302 3 ACT ACT . E 2 ACT A 1 303 5 ACT ACT . F 2 ACT A 1 304 6 ACT ACT . G 3 V6M A 1 305 1 V6M ABC . H 4 V6P A 1 306 1 V6P XYZ . I 4 V6P A 1 307 3 V6P XYZ . J 2 ACT B 1 301 2 ACT ACT . K 2 ACT B 1 302 4 ACT ACT . L 5 CL B 1 303 1 CL CL . M 5 CL B 1 304 2 CL CL . N 3 V6M B 1 305 2 V6M ABC . O 4 V6P B 1 306 2 V6P XYZ . P 6 HOH A 1 401 149 HOH HOH . P 6 HOH A 2 402 158 HOH HOH . P 6 HOH A 3 403 190 HOH HOH . P 6 HOH A 4 404 78 HOH HOH . P 6 HOH A 5 405 31 HOH HOH . P 6 HOH A 6 406 17 HOH HOH . P 6 HOH A 7 407 182 HOH HOH . P 6 HOH A 8 408 168 HOH HOH . P 6 HOH A 9 409 90 HOH HOH . P 6 HOH A 10 410 52 HOH HOH . P 6 HOH A 11 411 33 HOH HOH . P 6 HOH A 12 412 45 HOH HOH . P 6 HOH A 13 413 24 HOH HOH . P 6 HOH A 14 414 36 HOH HOH . P 6 HOH A 15 415 79 HOH HOH . P 6 HOH A 16 416 43 HOH HOH . P 6 HOH A 17 417 178 HOH HOH . P 6 HOH A 18 418 38 HOH HOH . P 6 HOH A 19 419 141 HOH HOH . P 6 HOH A 20 420 59 HOH HOH . P 6 HOH A 21 421 119 HOH HOH . P 6 HOH A 22 422 102 HOH HOH . P 6 HOH A 23 423 163 HOH HOH . P 6 HOH A 24 424 77 HOH HOH . P 6 HOH A 25 425 42 HOH HOH . P 6 HOH A 26 426 128 HOH HOH . P 6 HOH A 27 427 117 HOH HOH . P 6 HOH A 28 428 146 HOH HOH . P 6 HOH A 29 429 155 HOH HOH . P 6 HOH A 30 430 110 HOH HOH . P 6 HOH A 31 431 180 HOH HOH . P 6 HOH A 32 432 54 HOH HOH . P 6 HOH A 33 433 61 HOH HOH . P 6 HOH A 34 434 83 HOH HOH . P 6 HOH A 35 435 26 HOH HOH . P 6 HOH A 36 436 5 HOH HOH . P 6 HOH A 37 437 10 HOH HOH . P 6 HOH A 38 438 19 HOH HOH . P 6 HOH A 39 439 21 HOH HOH . P 6 HOH A 40 440 157 HOH HOH . P 6 HOH A 41 441 6 HOH HOH . P 6 HOH A 42 442 12 HOH HOH . P 6 HOH A 43 443 162 HOH HOH . P 6 HOH A 44 444 35 HOH HOH . P 6 HOH A 45 445 114 HOH HOH . P 6 HOH A 46 446 109 HOH HOH . P 6 HOH A 47 447 67 HOH HOH . P 6 HOH A 48 448 75 HOH HOH . P 6 HOH A 49 449 106 HOH HOH . P 6 HOH A 50 450 9 HOH HOH . P 6 HOH A 51 451 91 HOH HOH . P 6 HOH A 52 452 94 HOH HOH . P 6 HOH A 53 453 11 HOH HOH . P 6 HOH A 54 454 69 HOH HOH . P 6 HOH A 55 455 104 HOH HOH . P 6 HOH A 56 456 46 HOH HOH . P 6 HOH A 57 457 82 HOH HOH . P 6 HOH A 58 458 64 HOH HOH . P 6 HOH A 59 459 101 HOH HOH . P 6 HOH A 60 460 18 HOH HOH . P 6 HOH A 61 461 137 HOH HOH . P 6 HOH A 62 462 57 HOH HOH . P 6 HOH A 63 463 179 HOH HOH . P 6 HOH A 64 464 115 HOH HOH . P 6 HOH A 65 465 50 HOH HOH . P 6 HOH A 66 466 164 HOH HOH . P 6 HOH A 67 467 123 HOH HOH . P 6 HOH A 68 468 127 HOH HOH . P 6 HOH A 69 469 143 HOH HOH . P 6 HOH A 70 470 132 HOH HOH . P 6 HOH A 71 471 93 HOH HOH . P 6 HOH A 72 472 99 HOH HOH . P 6 HOH A 73 473 136 HOH HOH . P 6 HOH A 74 474 170 HOH HOH . P 6 HOH A 75 475 92 HOH HOH . P 6 HOH A 76 476 139 HOH HOH . P 6 HOH A 77 477 86 HOH HOH . P 6 HOH A 78 478 169 HOH HOH . P 6 HOH A 79 479 120 HOH HOH . P 6 HOH A 80 480 89 HOH HOH . P 6 HOH A 81 481 122 HOH HOH . P 6 HOH A 82 482 41 HOH HOH . P 6 HOH A 83 483 48 HOH HOH . P 6 HOH A 84 484 95 HOH HOH . Q 6 HOH B 1 401 183 HOH HOH . Q 6 HOH B 2 402 167 HOH HOH . Q 6 HOH B 3 403 187 HOH HOH . Q 6 HOH B 4 404 66 HOH HOH . Q 6 HOH B 5 405 191 HOH HOH . Q 6 HOH B 6 406 124 HOH HOH . Q 6 HOH B 7 407 154 HOH HOH . Q 6 HOH B 8 408 29 HOH HOH . Q 6 HOH B 9 409 37 HOH HOH . Q 6 HOH B 10 410 39 HOH HOH . Q 6 HOH B 11 411 34 HOH HOH . Q 6 HOH B 12 412 166 HOH HOH . Q 6 HOH B 13 413 192 HOH HOH . Q 6 HOH B 14 414 22 HOH HOH . Q 6 HOH B 15 415 25 HOH HOH . Q 6 HOH B 16 416 156 HOH HOH . Q 6 HOH B 17 417 160 HOH HOH . Q 6 HOH B 18 418 84 HOH HOH . Q 6 HOH B 19 419 65 HOH HOH . Q 6 HOH B 20 420 116 HOH HOH . Q 6 HOH B 21 421 53 HOH HOH . Q 6 HOH B 22 422 118 HOH HOH . Q 6 HOH B 23 423 159 HOH HOH . Q 6 HOH B 24 424 81 HOH HOH . Q 6 HOH B 25 425 28 HOH HOH . Q 6 HOH B 26 426 49 HOH HOH . Q 6 HOH B 27 427 40 HOH HOH . Q 6 HOH B 28 428 56 HOH HOH . Q 6 HOH B 29 429 138 HOH HOH . Q 6 HOH B 30 430 13 HOH HOH . Q 6 HOH B 31 431 181 HOH HOH . Q 6 HOH B 32 432 14 HOH HOH . Q 6 HOH B 33 433 23 HOH HOH . Q 6 HOH B 34 434 130 HOH HOH . Q 6 HOH B 35 435 144 HOH HOH . Q 6 HOH B 36 436 126 HOH HOH . Q 6 HOH B 37 437 68 HOH HOH . Q 6 HOH B 38 438 80 HOH HOH . Q 6 HOH B 39 439 186 HOH HOH . Q 6 HOH B 40 440 3 HOH HOH . Q 6 HOH B 41 441 55 HOH HOH . Q 6 HOH B 42 442 97 HOH HOH . Q 6 HOH B 43 443 100 HOH HOH . Q 6 HOH B 44 444 176 HOH HOH . Q 6 HOH B 45 445 16 HOH HOH . Q 6 HOH B 46 446 4 HOH HOH . Q 6 HOH B 47 447 51 HOH HOH . Q 6 HOH B 48 448 7 HOH HOH . Q 6 HOH B 49 449 32 HOH HOH . Q 6 HOH B 50 450 108 HOH HOH . Q 6 HOH B 51 451 15 HOH HOH . Q 6 HOH B 52 452 70 HOH HOH . Q 6 HOH B 53 453 189 HOH HOH . Q 6 HOH B 54 454 145 HOH HOH . Q 6 HOH B 55 455 98 HOH HOH . Q 6 HOH B 56 456 71 HOH HOH . Q 6 HOH B 57 457 63 HOH HOH . Q 6 HOH B 58 458 8 HOH HOH . Q 6 HOH B 59 459 105 HOH HOH . Q 6 HOH B 60 460 125 HOH HOH . Q 6 HOH B 61 461 72 HOH HOH . Q 6 HOH B 62 462 47 HOH HOH . Q 6 HOH B 63 463 177 HOH HOH . Q 6 HOH B 64 464 73 HOH HOH . Q 6 HOH B 65 465 113 HOH HOH . Q 6 HOH B 66 466 131 HOH HOH . Q 6 HOH B 67 467 44 HOH HOH . Q 6 HOH B 68 468 165 HOH HOH . Q 6 HOH B 69 469 88 HOH HOH . Q 6 HOH B 70 470 20 HOH HOH . Q 6 HOH B 71 471 62 HOH HOH . Q 6 HOH B 72 472 121 HOH HOH . Q 6 HOH B 73 473 175 HOH HOH . Q 6 HOH B 74 474 184 HOH HOH . Q 6 HOH B 75 475 129 HOH HOH . Q 6 HOH B 76 476 74 HOH HOH . Q 6 HOH B 77 477 112 HOH HOH . Q 6 HOH B 78 478 107 HOH HOH . Q 6 HOH B 79 479 142 HOH HOH . Q 6 HOH B 80 480 188 HOH HOH . Q 6 HOH B 81 481 161 HOH HOH . Q 6 HOH B 82 482 60 HOH HOH . Q 6 HOH B 83 483 76 HOH HOH . Q 6 HOH B 84 484 140 HOH HOH . Q 6 HOH B 85 485 103 HOH HOH . Q 6 HOH B 86 486 147 HOH HOH . Q 6 HOH B 87 487 185 HOH HOH . Q 6 HOH B 88 488 96 HOH HOH . Q 6 HOH B 89 489 171 HOH HOH . Q 6 HOH B 90 490 174 HOH HOH . Q 6 HOH B 91 491 173 HOH HOH . Q 6 HOH B 92 492 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 V6M . . . N 3 48.11 -0.958 -21.321 0.77 34.11 ? C01 V6M 305 B 1 HETATM 2 C C03 V6M . . . N 3 47.441 -2.177 -21.44 0.77 32.09 ? C03 V6M 305 B 1 HETATM 3 C C04 V6M . . . N 3 46.13 -1.95 -21.15 0.77 31.39 ? C04 V6M 305 B 1 HETATM 4 C C05 V6M . . . N 3 46.001 -0.604 -20.868 0.77 31.82 ? C05 V6M 305 B 1 HETATM 5 C C06 V6M . . . N 3 49.57 -0.62 -21.517 0.77 43.01 ? C06 V6M 305 B 1 HETATM 6 C C07 V6M . . . N 3 48.073 -3.51 -21.792 0.77 30.49 ? C07 V6M 305 B 1 HETATM 7 C C08 V6M . . . N 3 44.649 0.033 -20.474 0.77 29.81 ? C08 V6M 305 B 1 HETATM 8 C C11 V6M . . . N 3 44.867 -2.881 -21.108 0.77 31.2 ? C11 V6M 305 B 1 HETATM 9 C C12 V6M . . . N 3 43.545 -2.28 -20.728 0.77 29.18 ? C12 V6M 305 B 1 HETATM 10 C C13 V6M . . . N 3 43.441 -0.818 -20.462 0.77 29.71 ? C13 V6M 305 B 1 HETATM 11 C C14 V6M . . . N 3 44.584 1.536 -20.192 0.77 31.3 ? C14 V6M 305 B 1 HETATM 12 C C15 V6M . . . N 3 49.109 -3.474 -22.895 0.77 32.09 ? C15 V6M 305 B 1 HETATM 13 C C16 V6M . . . N 3 47.667 -4.81 -21.047 0.77 29.2 ? C16 V6M 305 B 1 HETATM 14 C C17 V6M . . . N 3 48.344 -6.123 -21.405 0.77 27.47 ? C17 V6M 305 B 1 HETATM 15 C C18 V6M . . . N 3 49.774 -4.772 -23.281 0.77 31.63 ? C18 V6M 305 B 1 HETATM 16 C C19 V6M . . . N 3 49.375 -6.046 -22.56 0.77 29.96 ? C19 V6M 305 B 1 HETATM 17 N N02 V6M . . . N 3 47.213 -0.024 -20.983 0.77 32.44 ? N02 V6M 305 B 1 HETATM 18 O O09 V6M . . . N 3 50.445 -1.249 -20.87 0.77 45.94 ? O09 V6M 305 B 1 HETATM 19 O O10 V6M . . . N 3 49.87 0.306 -22.317 0.77 46.15 ? O10 V6M 305 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #