data_6XQ9
#
_model_server_result.job_id            J96o8PE4nPp4UlI0d7iGgQ 
_model_server_result.datetime_utc      '2025-03-26 12:06:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":305}' 
#
_entry.id    6XQ9 
#
_exptl.entry_id    6XQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              251.28 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-methyl-3-phenyl-1H-indole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XQ9 
_cell.length_a            102.112 
_cell.length_b            102.112 
_cell.length_c            102.179 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    'P 62' 
_symmetry.space_group_name_H-M     'P 62' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 19 A CYS 38 1_555 A SG CYS 80 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 125 A CYS 144 1_555 A SG CYS 189 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 19 B CYS 38 1_555 B SG CYS 80 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 125 B CYS 144 1_555 B SG CYS 189 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C16 H13 N O2' 
_chem_comp.formula_weight    251.28 
_chem_comp.id                V6M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-methyl-3-phenyl-1H-indole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C08 V6M sing 364 n n 
C13 C08 V6M doub 365 n y 
C13 C12 V6M sing 366 n y 
C08 C05 V6M sing 367 n y 
C12 C11 V6M doub 368 n y 
C05 N02 V6M sing 369 n y 
C05 C04 V6M doub 370 n y 
O10 C06 V6M doub 371 n n 
N02 C01 V6M sing 372 n y 
C16 C17 V6M doub 373 n y 
C16 C07 V6M sing 374 n y 
C11 C04 V6M sing 375 n y 
C04 C03 V6M sing 376 n y 
C01 C03 V6M doub 377 n y 
C01 C06 V6M sing 378 n n 
C17 C19 V6M sing 379 n y 
C03 C07 V6M sing 380 n n 
C06 O09 V6M sing 381 n n 
C07 C15 V6M doub 382 n y 
C19 C18 V6M doub 383 n y 
C15 C18 V6M sing 384 n y 
C11 H1 V6M sing 385 n n 
C12 H2 V6M sing 386 n n 
C13 H3 V6M sing 387 n n 
C14 H4 V6M sing 388 n n 
C14 H5 V6M sing 389 n n 
C14 H6 V6M sing 390 n n 
C15 H7 V6M sing 391 n n 
C16 H8 V6M sing 392 n n 
C17 H9 V6M sing 393 n n 
C18 H10 V6M sing 394 n n 
C19 H11 V6M sing 395 n n 
N02 H12 V6M sing 396 n n 
O09 H13 V6M sing 397 n n 
#
_atom_sites.entry_id                     6XQ9 
_atom_sites.fract_transf_matrix[1][1]    0.009793 
_atom_sites.fract_transf_matrix[1][2]    0.005654 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009787 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 301 6 ACT ACT . 
D 2 ACT A 1 302 7 ACT ACT . 
E 3 V6S A 1 303 5 V6S ABC . 
F 3 V6S A 1 304 7 V6S ABC . 
G 4 V6M A 1 305 4 V6M LIG . 
H 2 ACT B 1 301 5 ACT ACT . 
I 2 ACT B 1 302 8 ACT ACT . 
J 3 V6S B 1 303 6 V6S ABC . 
K 3 V6S B 1 304 8 V6S ABC . 
L 4 V6M B 1 305 3 V6M LIG . 
M 5 HOH A 1 401 61 HOH HOH . 
M 5 HOH A 2 402 42 HOH HOH . 
M 5 HOH A 3 403 56 HOH HOH . 
M 5 HOH A 4 404 41 HOH HOH . 
M 5 HOH A 5 405 21 HOH HOH . 
M 5 HOH A 6 406 68 HOH HOH . 
M 5 HOH A 7 407 1 HOH HOH . 
M 5 HOH A 8 408 16 HOH HOH . 
M 5 HOH A 9 409 59 HOH HOH . 
M 5 HOH A 10 410 25 HOH HOH . 
M 5 HOH A 11 411 87 HOH HOH . 
M 5 HOH A 12 412 13 HOH HOH . 
M 5 HOH A 13 413 63 HOH HOH . 
M 5 HOH A 14 414 38 HOH HOH . 
M 5 HOH A 15 415 20 HOH HOH . 
M 5 HOH A 16 416 14 HOH HOH . 
M 5 HOH A 17 417 49 HOH HOH . 
M 5 HOH A 18 418 86 HOH HOH . 
M 5 HOH A 19 419 45 HOH HOH . 
M 5 HOH A 20 420 3 HOH HOH . 
M 5 HOH A 21 421 82 HOH HOH . 
M 5 HOH A 22 422 94 HOH HOH . 
M 5 HOH A 23 423 5 HOH HOH . 
M 5 HOH A 24 424 93 HOH HOH . 
M 5 HOH A 25 425 62 HOH HOH . 
M 5 HOH A 26 426 71 HOH HOH . 
M 5 HOH A 27 427 60 HOH HOH . 
M 5 HOH A 28 428 89 HOH HOH . 
M 5 HOH A 29 429 78 HOH HOH . 
M 5 HOH A 30 430 33 HOH HOH . 
M 5 HOH A 31 431 11 HOH HOH . 
M 5 HOH A 32 432 26 HOH HOH . 
M 5 HOH A 33 433 32 HOH HOH . 
M 5 HOH A 34 434 57 HOH HOH . 
M 5 HOH A 35 435 19 HOH HOH . 
M 5 HOH A 36 436 65 HOH HOH . 
M 5 HOH A 37 437 36 HOH HOH . 
M 5 HOH A 38 438 22 HOH HOH . 
M 5 HOH A 39 439 80 HOH HOH . 
M 5 HOH A 40 440 43 HOH HOH . 
M 5 HOH A 41 441 18 HOH HOH . 
M 5 HOH A 42 442 90 HOH HOH . 
M 5 HOH A 43 443 83 HOH HOH . 
M 5 HOH A 44 444 4 HOH HOH . 
M 5 HOH A 45 445 88 HOH HOH . 
M 5 HOH A 46 446 79 HOH HOH . 
M 5 HOH A 47 447 53 HOH HOH . 
M 5 HOH A 48 448 64 HOH HOH . 
M 5 HOH A 49 449 28 HOH HOH . 
N 5 HOH B 1 401 40 HOH HOH . 
N 5 HOH B 2 402 96 HOH HOH . 
N 5 HOH B 3 403 47 HOH HOH . 
N 5 HOH B 4 404 77 HOH HOH . 
N 5 HOH B 5 405 9 HOH HOH . 
N 5 HOH B 6 406 46 HOH HOH . 
N 5 HOH B 7 407 72 HOH HOH . 
N 5 HOH B 8 408 75 HOH HOH . 
N 5 HOH B 9 409 23 HOH HOH . 
N 5 HOH B 10 410 30 HOH HOH . 
N 5 HOH B 11 411 29 HOH HOH . 
N 5 HOH B 12 412 50 HOH HOH . 
N 5 HOH B 13 413 15 HOH HOH . 
N 5 HOH B 14 414 51 HOH HOH . 
N 5 HOH B 15 415 17 HOH HOH . 
N 5 HOH B 16 416 67 HOH HOH . 
N 5 HOH B 17 417 66 HOH HOH . 
N 5 HOH B 18 418 24 HOH HOH . 
N 5 HOH B 19 419 35 HOH HOH . 
N 5 HOH B 20 420 12 HOH HOH . 
N 5 HOH B 21 421 2 HOH HOH . 
N 5 HOH B 22 422 48 HOH HOH . 
N 5 HOH B 23 423 8 HOH HOH . 
N 5 HOH B 24 424 31 HOH HOH . 
N 5 HOH B 25 425 44 HOH HOH . 
N 5 HOH B 26 426 70 HOH HOH . 
N 5 HOH B 27 427 7 HOH HOH . 
N 5 HOH B 28 428 34 HOH HOH . 
N 5 HOH B 29 429 54 HOH HOH . 
N 5 HOH B 30 430 84 HOH HOH . 
N 5 HOH B 31 431 10 HOH HOH . 
N 5 HOH B 32 432 55 HOH HOH . 
N 5 HOH B 33 433 69 HOH HOH . 
N 5 HOH B 34 434 37 HOH HOH . 
N 5 HOH B 35 435 81 HOH HOH . 
N 5 HOH B 36 436 76 HOH HOH . 
N 5 HOH B 37 437 39 HOH HOH . 
N 5 HOH B 38 438 27 HOH HOH . 
N 5 HOH B 39 439 95 HOH HOH . 
N 5 HOH B 40 440 6 HOH HOH . 
N 5 HOH B 41 441 85 HOH HOH . 
N 5 HOH B 42 442 73 HOH HOH . 
N 5 HOH B 43 443 91 HOH HOH . 
N 5 HOH B 44 444 58 HOH HOH . 
N 5 HOH B 45 445 92 HOH HOH . 
N 5 HOH B 46 446 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 V6M . . . L 4 47.954 -0.857 -21.413 0.79 42.66 ? C01 V6M 305 B 1 
HETATM 2 C C03 V6M . . . L 4 47.352 -2.111 -21.508 0.79 38.03 ? C03 V6M 305 B 1 
HETATM 3 C C04 V6M . . . L 4 46.026 -1.953 -21.194 0.79 46.18 ? C04 V6M 305 B 1 
HETATM 4 C C05 V6M . . . L 4 45.816 -0.606 -20.904 0.79 32.72 ? C05 V6M 305 B 1 
HETATM 5 C C06 V6M . . . L 4 49.418 -0.522 -21.669 0.79 57.06 ? C06 V6M 305 B 1 
HETATM 6 C C07 V6M . . . L 4 48.059 -3.41 -21.91 0.79 43.36 ? C07 V6M 305 B 1 
HETATM 7 C C08 V6M . . . L 4 44.394 -0.071 -20.502 0.79 36.85 ? C08 V6M 305 B 1 
HETATM 8 C C11 V6M . . . L 4 44.816 -2.961 -21.121 0.79 34.53 ? C11 V6M 305 B 1 
HETATM 9 C C12 V6M . . . L 4 43.445 -2.462 -20.729 0.79 54.16 ? C12 V6M 305 B 1 
HETATM 10 C C13 V6M . . . L 4 43.23 -1.023 -20.422 0.79 47 ? C13 V6M 305 B 1 
HETATM 11 C C14 V6M . . . L 4 44.219 1.414 -20.192 0.79 37.8 ? C14 V6M 305 B 1 
HETATM 12 C C15 V6M . . . L 4 47.757 -4.728 -21.201 0.79 43.11 ? C15 V6M 305 B 1 
HETATM 13 C C16 V6M . . . L 4 49.081 -3.393 -23.045 0.79 40.57 ? C16 V6M 305 B 1 
HETATM 14 C C17 V6M . . . L 4 49.809 -4.665 -23.469 0.79 25.67 ? C17 V6M 305 B 1 
HETATM 15 C C18 V6M . . . L 4 48.468 -6.009 -21.63 0.79 30.22 ? C18 V6M 305 B 1 
HETATM 16 C C19 V6M . . . L 4 49.5 -5.976 -22.756 0.79 46.86 ? C19 V6M 305 B 1 
HETATM 17 N N02 V6M . . . L 4 47.005 0.056 -21.043 0.79 50 ? N02 V6M 305 B 1 
HETATM 18 O O09 V6M . . . L 4 50.318 -1.16 -21.059 0.79 55.13 ? O09 V6M 305 B 1 
HETATM 19 O O10 V6M . . . L 4 49.716 0.387 -22.49 0.79 64.37 ? O10 V6M 305 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#