data_6XQL # _model_server_result.job_id zF4MUNoWo5PmzQ6jHQn7pQ _model_server_result.datetime_utc '2024-12-26 10:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6XQL # _exptl.entry_id 6XQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XQL _cell.length_a 38.4 _cell.length_b 49.006 _cell.length_c 113.995 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC GLC C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 403 GLC 2 n B BGC 2 B 2 BGC A 402 GLC 2 n B BGC 3 B 3 BGC A 401 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 120 1_555 A SG CYS 188 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? covale ? covale1 B O3 GLC . B GLC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? metalc ? metalc1 A O GLU 31 A GLU 28 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A O GLY 75 A GLY 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A O ASP 261 A ASP 258 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 A OD1 ASP 261 A ASP 258 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 C CA CA . A CA 301 1_555 D O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc6 C CA CA . A CA 301 1_555 D O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 C CA CA . A CA 301 1_555 D O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XQL _atom_sites.fract_transf_matrix[1][1] 0.026042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 HOH A 1 401 669 HOH HOH . D 4 HOH A 2 402 744 HOH HOH . D 4 HOH A 3 403 659 HOH HOH . D 4 HOH A 4 404 622 HOH HOH . D 4 HOH A 5 405 506 HOH HOH . D 4 HOH A 6 406 547 HOH HOH . D 4 HOH A 7 407 682 HOH HOH . D 4 HOH A 8 408 608 HOH HOH . D 4 HOH A 9 409 562 HOH HOH . D 4 HOH A 10 410 611 HOH HOH . D 4 HOH A 11 411 661 HOH HOH . D 4 HOH A 12 412 526 HOH HOH . D 4 HOH A 13 413 588 HOH HOH . D 4 HOH A 14 414 747 HOH HOH . D 4 HOH A 15 415 632 HOH HOH . D 4 HOH A 16 416 717 HOH HOH . D 4 HOH A 17 417 552 HOH HOH . D 4 HOH A 18 418 565 HOH HOH . D 4 HOH A 19 419 584 HOH HOH . D 4 HOH A 20 420 701 HOH HOH . D 4 HOH A 21 421 627 HOH HOH . D 4 HOH A 22 422 514 HOH HOH . D 4 HOH A 23 423 533 HOH HOH . D 4 HOH A 24 424 546 HOH HOH . D 4 HOH A 25 425 520 HOH HOH . D 4 HOH A 26 426 699 HOH HOH . D 4 HOH A 27 427 563 HOH HOH . D 4 HOH A 28 428 646 HOH HOH . D 4 HOH A 29 429 553 HOH HOH . D 4 HOH A 30 430 626 HOH HOH . D 4 HOH A 31 431 551 HOH HOH . D 4 HOH A 32 432 589 HOH HOH . D 4 HOH A 33 433 529 HOH HOH . D 4 HOH A 34 434 523 HOH HOH . D 4 HOH A 35 435 535 HOH HOH . D 4 HOH A 36 436 572 HOH HOH . D 4 HOH A 37 437 508 HOH HOH . D 4 HOH A 38 438 502 HOH HOH . D 4 HOH A 39 439 633 HOH HOH . D 4 HOH A 40 440 564 HOH HOH . D 4 HOH A 41 441 693 HOH HOH . D 4 HOH A 42 442 610 HOH HOH . D 4 HOH A 43 443 560 HOH HOH . D 4 HOH A 44 444 503 HOH HOH . D 4 HOH A 45 445 556 HOH HOH . D 4 HOH A 46 446 511 HOH HOH . D 4 HOH A 47 447 519 HOH HOH . D 4 HOH A 48 448 575 HOH HOH . D 4 HOH A 49 449 605 HOH HOH . D 4 HOH A 50 450 538 HOH HOH . D 4 HOH A 51 451 603 HOH HOH . D 4 HOH A 52 452 704 HOH HOH . D 4 HOH A 53 453 522 HOH HOH . D 4 HOH A 54 454 596 HOH HOH . D 4 HOH A 55 455 518 HOH HOH . D 4 HOH A 56 456 536 HOH HOH . D 4 HOH A 57 457 592 HOH HOH . D 4 HOH A 58 458 530 HOH HOH . D 4 HOH A 59 459 550 HOH HOH . D 4 HOH A 60 460 616 HOH HOH . D 4 HOH A 61 461 641 HOH HOH . D 4 HOH A 62 462 639 HOH HOH . D 4 HOH A 63 463 674 HOH HOH . D 4 HOH A 64 464 628 HOH HOH . D 4 HOH A 65 465 657 HOH HOH . D 4 HOH A 66 466 642 HOH HOH . D 4 HOH A 67 467 620 HOH HOH . D 4 HOH A 68 468 569 HOH HOH . D 4 HOH A 69 469 597 HOH HOH . D 4 HOH A 70 470 644 HOH HOH . D 4 HOH A 71 471 566 HOH HOH . D 4 HOH A 72 472 719 HOH HOH . D 4 HOH A 73 473 509 HOH HOH . D 4 HOH A 74 474 658 HOH HOH . D 4 HOH A 75 475 512 HOH HOH . D 4 HOH A 76 476 681 HOH HOH . D 4 HOH A 77 477 684 HOH HOH . D 4 HOH A 78 478 528 HOH HOH . D 4 HOH A 79 479 631 HOH HOH . D 4 HOH A 80 480 515 HOH HOH . D 4 HOH A 81 481 708 HOH HOH . D 4 HOH A 82 482 567 HOH HOH . D 4 HOH A 83 483 582 HOH HOH . D 4 HOH A 84 484 501 HOH HOH . D 4 HOH A 85 485 598 HOH HOH . D 4 HOH A 86 486 591 HOH HOH . D 4 HOH A 87 487 734 HOH HOH . D 4 HOH A 88 488 583 HOH HOH . D 4 HOH A 89 489 541 HOH HOH . D 4 HOH A 90 490 625 HOH HOH . D 4 HOH A 91 491 753 HOH HOH . D 4 HOH A 92 492 568 HOH HOH . D 4 HOH A 93 493 695 HOH HOH . D 4 HOH A 94 494 637 HOH HOH . D 4 HOH A 95 495 559 HOH HOH . D 4 HOH A 96 496 543 HOH HOH . D 4 HOH A 97 497 507 HOH HOH . D 4 HOH A 98 498 619 HOH HOH . D 4 HOH A 99 499 601 HOH HOH . D 4 HOH A 100 500 532 HOH HOH . D 4 HOH A 101 501 746 HOH HOH . D 4 HOH A 102 502 629 HOH HOH . D 4 HOH A 103 503 576 HOH HOH . D 4 HOH A 104 504 571 HOH HOH . D 4 HOH A 105 505 662 HOH HOH . D 4 HOH A 106 506 561 HOH HOH . D 4 HOH A 107 507 505 HOH HOH . D 4 HOH A 108 508 668 HOH HOH . D 4 HOH A 109 509 606 HOH HOH . D 4 HOH A 110 510 555 HOH HOH . D 4 HOH A 111 511 542 HOH HOH . D 4 HOH A 112 512 741 HOH HOH . D 4 HOH A 113 513 718 HOH HOH . D 4 HOH A 114 514 688 HOH HOH . D 4 HOH A 115 515 643 HOH HOH . D 4 HOH A 116 516 636 HOH HOH . D 4 HOH A 117 517 675 HOH HOH . D 4 HOH A 118 518 680 HOH HOH . D 4 HOH A 119 519 671 HOH HOH . D 4 HOH A 120 520 531 HOH HOH . D 4 HOH A 121 521 655 HOH HOH . D 4 HOH A 122 522 574 HOH HOH . D 4 HOH A 123 523 649 HOH HOH . D 4 HOH A 124 524 549 HOH HOH . D 4 HOH A 125 525 614 HOH HOH . D 4 HOH A 126 526 593 HOH HOH . D 4 HOH A 127 527 676 HOH HOH . D 4 HOH A 128 528 577 HOH HOH . D 4 HOH A 129 529 648 HOH HOH . D 4 HOH A 130 530 558 HOH HOH . D 4 HOH A 131 531 544 HOH HOH . D 4 HOH A 132 532 557 HOH HOH . D 4 HOH A 133 533 516 HOH HOH . D 4 HOH A 134 534 527 HOH HOH . D 4 HOH A 135 535 692 HOH HOH . D 4 HOH A 136 536 621 HOH HOH . D 4 HOH A 137 537 513 HOH HOH . D 4 HOH A 138 538 728 HOH HOH . D 4 HOH A 139 539 638 HOH HOH . D 4 HOH A 140 540 554 HOH HOH . D 4 HOH A 141 541 711 HOH HOH . D 4 HOH A 142 542 618 HOH HOH . D 4 HOH A 143 543 548 HOH HOH . D 4 HOH A 144 544 652 HOH HOH . D 4 HOH A 145 545 570 HOH HOH . D 4 HOH A 146 546 510 HOH HOH . D 4 HOH A 147 547 665 HOH HOH . D 4 HOH A 148 548 540 HOH HOH . D 4 HOH A 149 549 504 HOH HOH . D 4 HOH A 150 550 573 HOH HOH . D 4 HOH A 151 551 612 HOH HOH . D 4 HOH A 152 552 691 HOH HOH . D 4 HOH A 153 553 545 HOH HOH . D 4 HOH A 154 554 640 HOH HOH . D 4 HOH A 155 555 579 HOH HOH . D 4 HOH A 156 556 615 HOH HOH . D 4 HOH A 157 557 524 HOH HOH . D 4 HOH A 158 558 721 HOH HOH . D 4 HOH A 159 559 697 HOH HOH . D 4 HOH A 160 560 733 HOH HOH . D 4 HOH A 161 561 645 HOH HOH . D 4 HOH A 162 562 539 HOH HOH . D 4 HOH A 163 563 724 HOH HOH . D 4 HOH A 164 564 587 HOH HOH . D 4 HOH A 165 565 586 HOH HOH . D 4 HOH A 166 566 595 HOH HOH . D 4 HOH A 167 567 647 HOH HOH . D 4 HOH A 168 568 694 HOH HOH . D 4 HOH A 169 569 599 HOH HOH . D 4 HOH A 170 570 525 HOH HOH . D 4 HOH A 171 571 714 HOH HOH . D 4 HOH A 172 572 740 HOH HOH . D 4 HOH A 173 573 578 HOH HOH . D 4 HOH A 174 574 726 HOH HOH . D 4 HOH A 175 575 517 HOH HOH . D 4 HOH A 176 576 521 HOH HOH . D 4 HOH A 177 577 700 HOH HOH . D 4 HOH A 178 578 723 HOH HOH . D 4 HOH A 179 579 678 HOH HOH . D 4 HOH A 180 580 653 HOH HOH . D 4 HOH A 181 581 749 HOH HOH . D 4 HOH A 182 582 656 HOH HOH . D 4 HOH A 183 583 660 HOH HOH . D 4 HOH A 184 584 742 HOH HOH . D 4 HOH A 185 585 743 HOH HOH . D 4 HOH A 186 586 673 HOH HOH . D 4 HOH A 187 587 651 HOH HOH . D 4 HOH A 188 588 710 HOH HOH . D 4 HOH A 189 589 731 HOH HOH . D 4 HOH A 190 590 738 HOH HOH . D 4 HOH A 191 591 624 HOH HOH . D 4 HOH A 192 592 581 HOH HOH . D 4 HOH A 193 593 715 HOH HOH . D 4 HOH A 194 594 735 HOH HOH . D 4 HOH A 195 595 580 HOH HOH . D 4 HOH A 196 596 702 HOH HOH . D 4 HOH A 197 597 604 HOH HOH . D 4 HOH A 198 598 650 HOH HOH . D 4 HOH A 199 599 739 HOH HOH . D 4 HOH A 200 600 607 HOH HOH . D 4 HOH A 201 601 698 HOH HOH . D 4 HOH A 202 602 617 HOH HOH . D 4 HOH A 203 603 720 HOH HOH . D 4 HOH A 204 604 654 HOH HOH . D 4 HOH A 205 605 630 HOH HOH . D 4 HOH A 206 606 594 HOH HOH . D 4 HOH A 207 607 670 HOH HOH . D 4 HOH A 208 608 751 HOH HOH . D 4 HOH A 209 609 609 HOH HOH . D 4 HOH A 210 610 707 HOH HOH . D 4 HOH A 211 611 686 HOH HOH . D 4 HOH A 212 612 534 HOH HOH . D 4 HOH A 213 613 667 HOH HOH . D 4 HOH A 214 614 590 HOH HOH . D 4 HOH A 215 615 716 HOH HOH . D 4 HOH A 216 616 736 HOH HOH . D 4 HOH A 217 617 690 HOH HOH . D 4 HOH A 218 618 685 HOH HOH . D 4 HOH A 219 619 537 HOH HOH . D 4 HOH A 220 620 745 HOH HOH . D 4 HOH A 221 621 600 HOH HOH . D 4 HOH A 222 622 634 HOH HOH . D 4 HOH A 223 623 672 HOH HOH . D 4 HOH A 224 624 730 HOH HOH . D 4 HOH A 225 625 732 HOH HOH . D 4 HOH A 226 626 677 HOH HOH . D 4 HOH A 227 627 585 HOH HOH . D 4 HOH A 228 628 750 HOH HOH . D 4 HOH A 229 629 705 HOH HOH . D 4 HOH A 230 630 713 HOH HOH . D 4 HOH A 231 631 687 HOH HOH . D 4 HOH A 232 632 602 HOH HOH . D 4 HOH A 233 633 679 HOH HOH . D 4 HOH A 234 634 703 HOH HOH . D 4 HOH A 235 635 748 HOH HOH . D 4 HOH A 236 636 737 HOH HOH . D 4 HOH A 237 637 712 HOH HOH . D 4 HOH A 238 638 664 HOH HOH . D 4 HOH A 239 639 613 HOH HOH . D 4 HOH A 240 640 623 HOH HOH . D 4 HOH A 241 641 663 HOH HOH . D 4 HOH A 242 642 722 HOH HOH . D 4 HOH A 243 643 727 HOH HOH . D 4 HOH A 244 644 729 HOH HOH . D 4 HOH A 245 645 689 HOH HOH . D 4 HOH A 246 646 696 HOH HOH . D 4 HOH A 247 647 709 HOH HOH . D 4 HOH A 248 648 666 HOH HOH . D 4 HOH A 249 649 635 HOH HOH . D 4 HOH A 250 650 683 HOH HOH . D 4 HOH A 251 651 725 HOH HOH . D 4 HOH A 252 652 752 HOH HOH . D 4 HOH A 253 653 706 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.833 _atom_site.Cartn_y -0.078 _atom_site.Cartn_z -5.097 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #