data_6XQQ # _model_server_result.job_id Ody6CE_MWAASwxMNtfs8xg _model_server_result.datetime_utc '2025-01-04 00:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6XQQ # _exptl.entry_id 6XQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XQQ _cell.length_a 115.222 _cell.length_b 115.222 _cell.length_c 183.992 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 159 A CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 24 B CYS 24 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 149 B CYS 149 1_555 B SG CYS 214 B CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 24 C CYS 24 1_555 C SG CYS 90 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 C SG CYS 134 C CYS 134 1_555 C SG CYS 184 C CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 159 C CYS 159 1_555 D SG CYS 175 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 D SG CYS 24 D CYS 24 1_555 D SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 149 D CYS 149 1_555 D SG CYS 214 D CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6XQQ _atom_sites.fract_transf_matrix[1][1] 0.008679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 301 301 GOL GOL . F 4 HOH A 1 401 50 HOH HOH . F 4 HOH A 2 402 139 HOH HOH . F 4 HOH A 3 403 9 HOH HOH . F 4 HOH A 4 404 26 HOH HOH . F 4 HOH A 5 405 39 HOH HOH . F 4 HOH A 6 406 29 HOH HOH . F 4 HOH A 7 407 73 HOH HOH . F 4 HOH A 8 408 8 HOH HOH . F 4 HOH A 9 409 81 HOH HOH . F 4 HOH A 10 410 61 HOH HOH . F 4 HOH A 11 411 40 HOH HOH . F 4 HOH A 12 412 109 HOH HOH . F 4 HOH A 13 413 17 HOH HOH . F 4 HOH A 14 414 94 HOH HOH . F 4 HOH A 15 415 92 HOH HOH . F 4 HOH A 16 416 136 HOH HOH . F 4 HOH A 17 417 91 HOH HOH . F 4 HOH A 18 418 96 HOH HOH . F 4 HOH A 19 419 131 HOH HOH . F 4 HOH A 20 420 130 HOH HOH . F 4 HOH A 21 421 10 HOH HOH . F 4 HOH A 22 422 42 HOH HOH . F 4 HOH A 23 423 99 HOH HOH . F 4 HOH A 24 424 93 HOH HOH . F 4 HOH A 25 425 76 HOH HOH . F 4 HOH A 26 426 110 HOH HOH . F 4 HOH A 27 427 85 HOH HOH . F 4 HOH A 28 428 75 HOH HOH . F 4 HOH A 29 429 98 HOH HOH . F 4 HOH A 30 430 128 HOH HOH . F 4 HOH A 31 431 137 HOH HOH . F 4 HOH A 32 432 129 HOH HOH . F 4 HOH A 33 433 43 HOH HOH . F 4 HOH A 34 434 95 HOH HOH . G 4 HOH B 1 301 45 HOH HOH . G 4 HOH B 2 302 13 HOH HOH . G 4 HOH B 3 303 33 HOH HOH . G 4 HOH B 4 304 133 HOH HOH . G 4 HOH B 5 305 5 HOH HOH . G 4 HOH B 6 306 138 HOH HOH . G 4 HOH B 7 307 12 HOH HOH . G 4 HOH B 8 308 103 HOH HOH . G 4 HOH B 9 309 3 HOH HOH . G 4 HOH B 10 310 145 HOH HOH . G 4 HOH B 11 311 72 HOH HOH . G 4 HOH B 12 312 16 HOH HOH . G 4 HOH B 13 313 52 HOH HOH . G 4 HOH B 14 314 122 HOH HOH . G 4 HOH B 15 315 51 HOH HOH . G 4 HOH B 16 316 105 HOH HOH . G 4 HOH B 17 317 97 HOH HOH . G 4 HOH B 18 318 59 HOH HOH . G 4 HOH B 19 319 143 HOH HOH . G 4 HOH B 20 320 11 HOH HOH . G 4 HOH B 21 321 6 HOH HOH . G 4 HOH B 22 322 102 HOH HOH . G 4 HOH B 23 323 1 HOH HOH . G 4 HOH B 24 324 34 HOH HOH . G 4 HOH B 25 325 104 HOH HOH . G 4 HOH B 26 326 25 HOH HOH . G 4 HOH B 27 327 101 HOH HOH . G 4 HOH B 28 328 14 HOH HOH . G 4 HOH B 29 329 27 HOH HOH . G 4 HOH B 30 330 18 HOH HOH . G 4 HOH B 31 331 86 HOH HOH . G 4 HOH B 32 332 2 HOH HOH . G 4 HOH B 33 333 4 HOH HOH . G 4 HOH B 34 334 68 HOH HOH . G 4 HOH B 35 335 15 HOH HOH . G 4 HOH B 36 336 118 HOH HOH . G 4 HOH B 37 337 100 HOH HOH . G 4 HOH B 38 338 32 HOH HOH . G 4 HOH B 39 339 58 HOH HOH . G 4 HOH B 40 340 69 HOH HOH . G 4 HOH B 41 341 135 HOH HOH . G 4 HOH B 42 342 60 HOH HOH . G 4 HOH B 43 343 89 HOH HOH . G 4 HOH B 44 344 83 HOH HOH . G 4 HOH B 45 345 125 HOH HOH . G 4 HOH B 46 346 7 HOH HOH . G 4 HOH B 47 347 84 HOH HOH . G 4 HOH B 48 348 127 HOH HOH . G 4 HOH B 49 349 140 HOH HOH . G 4 HOH B 50 350 106 HOH HOH . H 4 HOH C 1 301 20 HOH HOH . H 4 HOH C 2 302 53 HOH HOH . H 4 HOH C 3 303 62 HOH HOH . H 4 HOH C 4 304 77 HOH HOH . H 4 HOH C 5 305 48 HOH HOH . H 4 HOH C 6 306 121 HOH HOH . H 4 HOH C 7 307 28 HOH HOH . H 4 HOH C 8 308 47 HOH HOH . H 4 HOH C 9 309 41 HOH HOH . H 4 HOH C 10 310 19 HOH HOH . H 4 HOH C 11 311 107 HOH HOH . H 4 HOH C 12 312 38 HOH HOH . H 4 HOH C 13 313 150 HOH HOH . H 4 HOH C 14 314 54 HOH HOH . H 4 HOH C 15 315 151 HOH HOH . H 4 HOH C 16 316 149 HOH HOH . H 4 HOH C 17 317 108 HOH HOH . H 4 HOH C 18 318 74 HOH HOH . H 4 HOH C 19 319 152 HOH HOH . H 4 HOH C 20 320 112 HOH HOH . H 4 HOH C 21 321 49 HOH HOH . H 4 HOH C 22 322 111 HOH HOH . H 4 HOH C 23 323 78 HOH HOH . H 4 HOH C 24 324 79 HOH HOH . I 4 HOH D 1 301 126 HOH HOH . I 4 HOH D 2 302 66 HOH HOH . I 4 HOH D 3 303 46 HOH HOH . I 4 HOH D 4 304 44 HOH HOH . I 4 HOH D 5 305 23 HOH HOH . I 4 HOH D 6 306 70 HOH HOH . I 4 HOH D 7 307 71 HOH HOH . I 4 HOH D 8 308 134 HOH HOH . I 4 HOH D 9 309 67 HOH HOH . I 4 HOH D 10 310 24 HOH HOH . I 4 HOH D 11 311 144 HOH HOH . I 4 HOH D 12 312 21 HOH HOH . I 4 HOH D 13 313 22 HOH HOH . I 4 HOH D 14 314 30 HOH HOH . I 4 HOH D 15 315 64 HOH HOH . I 4 HOH D 16 316 87 HOH HOH . I 4 HOH D 17 317 148 HOH HOH . I 4 HOH D 18 318 82 HOH HOH . I 4 HOH D 19 319 36 HOH HOH . I 4 HOH D 20 320 56 HOH HOH . I 4 HOH D 21 321 57 HOH HOH . I 4 HOH D 22 322 117 HOH HOH . I 4 HOH D 23 323 35 HOH HOH . I 4 HOH D 24 324 120 HOH HOH . I 4 HOH D 25 325 31 HOH HOH . I 4 HOH D 26 326 141 HOH HOH . I 4 HOH D 27 327 142 HOH HOH . I 4 HOH D 28 328 124 HOH HOH . I 4 HOH D 29 329 80 HOH HOH . I 4 HOH D 30 330 63 HOH HOH . I 4 HOH D 31 331 113 HOH HOH . I 4 HOH D 32 332 90 HOH HOH . I 4 HOH D 33 333 116 HOH HOH . I 4 HOH D 34 334 115 HOH HOH . I 4 HOH D 35 335 146 HOH HOH . I 4 HOH D 36 336 147 HOH HOH . I 4 HOH D 37 337 119 HOH HOH . I 4 HOH D 38 338 65 HOH HOH . I 4 HOH D 39 339 123 HOH HOH . I 4 HOH D 40 340 37 HOH HOH . I 4 HOH D 41 341 55 HOH HOH . I 4 HOH D 42 342 114 HOH HOH . I 4 HOH D 43 343 132 HOH HOH . I 4 HOH D 44 344 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 29.133 10.991 76.294 1 66.53 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 3 28.563 10.48 75.127 1 71.08 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 3 27.997 11.123 77.341 1 62.23 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 3 26.788 11.486 76.763 1 69.22 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 3 27.928 9.748 78.05 1 66.76 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 3 29.074 9.64 78.839 1 67.63 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #