data_6XQT # _model_server_result.job_id AfQXVXi0XbTkiBe5O9z7Og _model_server_result.datetime_utc '2024-11-08 16:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6XQT # _exptl.entry_id 6XQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.98 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.48 _cell.angle_gamma 90 _cell.entry_id 6XQT _cell.length_a 46.516 _cell.length_b 54.473 _cell.length_c 114.491 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C43 NNA . A NNA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C43 NNA . B NNA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C36 H63 N5 O7 S' _chem_comp.formula_weight 709.98 _chem_comp.id NNA _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Narlaprevir, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 NNA doub 237 n n C1 N3 NNA sing 238 n n C1 N18 NNA sing 239 n n N3 C4 NNA sing 240 n n C4 C5 NNA sing 241 n n C4 C6 NNA sing 242 n n C4 C10 NNA sing 243 n n C5 C7 NNA sing 244 n n C6 C8 NNA sing 245 n n C7 C9 NNA sing 246 n n C8 C9 NNA sing 247 n n C10 S11 NNA sing 248 n n S11 O12 NNA doub 249 n n S11 O13 NNA doub 250 n n S11 C14 NNA sing 251 n n C14 C15 NNA sing 252 n n C14 C16 NNA sing 253 n n C14 C17 NNA sing 254 n n N18 C19 NNA sing 255 n n C19 C20 NNA sing 256 n n C19 C24 NNA sing 257 n n C20 C21 NNA sing 258 n n C20 C22 NNA sing 259 n n C20 C23 NNA sing 260 n n C24 O25 NNA doub 261 n n C24 N26 NNA sing 262 n n N26 C27 NNA sing 263 n n N26 C28 NNA sing 264 n n C27 C30 NNA sing 265 n n C28 C29 NNA sing 266 n n C28 C34 NNA sing 267 n n C29 C30 NNA sing 268 n n C29 C31 NNA sing 269 n n C30 C31 NNA sing 270 n n C31 C32 NNA sing 271 n n C31 C33 NNA sing 272 n n C34 O35 NNA doub 273 n n C34 N36 NNA sing 274 n n N36 C37 NNA sing 275 n n C37 C38 NNA sing 276 n n C37 C43 NNA sing 277 n n C38 C39 NNA sing 278 n n C39 C40 NNA sing 279 n n C40 C41 NNA sing 280 n n O42 C43 NNA sing 281 n n C43 C49 NNA sing 282 n n O44 C49 NNA doub 283 n n N45 C46 NNA sing 284 n n N45 C49 NNA sing 285 n n C46 C47 NNA sing 286 n n C46 C48 NNA sing 287 n n C47 C48 NNA sing 288 n n N3 HN3 NNA sing 289 n n C5 H5 NNA sing 290 n n C5 H5A NNA sing 291 n n C6 H6 NNA sing 292 n n C6 H6A NNA sing 293 n n C7 H7 NNA sing 294 n n C7 H7A NNA sing 295 n n C8 H8 NNA sing 296 n n C8 H8A NNA sing 297 n n C9 H9 NNA sing 298 n n C9 H9A NNA sing 299 n n C10 H10 NNA sing 300 n n C10 H10A NNA sing 301 n n C15 H15 NNA sing 302 n n C15 H15A NNA sing 303 n n C15 H15B NNA sing 304 n n C16 H16 NNA sing 305 n n C16 H16A NNA sing 306 n n C16 H16B NNA sing 307 n n C17 H17 NNA sing 308 n n C17 H17A NNA sing 309 n n C17 H17B NNA sing 310 n n N18 HN18 NNA sing 311 n n C19 H19 NNA sing 312 n n C21 H21 NNA sing 313 n n C21 H21A NNA sing 314 n n C21 H21B NNA sing 315 n n C22 H22 NNA sing 316 n n C22 H22A NNA sing 317 n n C22 H22B NNA sing 318 n n C23 H23 NNA sing 319 n n C23 H23A NNA sing 320 n n C23 H23B NNA sing 321 n n C27 H27 NNA sing 322 n n C27 H27A NNA sing 323 n n C28 H28 NNA sing 324 n n C29 H29 NNA sing 325 n n C30 H30 NNA sing 326 n n C32 H32 NNA sing 327 n n C32 H32A NNA sing 328 n n C32 H32B NNA sing 329 n n C33 H33 NNA sing 330 n n C33 H33A NNA sing 331 n n C33 H33B NNA sing 332 n n N36 HN36 NNA sing 333 n n C37 H37 NNA sing 334 n n C38 H38 NNA sing 335 n n C38 H38A NNA sing 336 n n C39 H39 NNA sing 337 n n C39 H39A NNA sing 338 n n C40 H40 NNA sing 339 n n C40 H40A NNA sing 340 n n C41 H41 NNA sing 341 n n C41 H41A NNA sing 342 n n C41 H41B NNA sing 343 n n O42 HO42 NNA sing 344 n n C43 H43 NNA sing 345 n n N45 HN45 NNA sing 346 n n C46 H46 NNA sing 347 n n C47 H47 NNA sing 348 n n C47 H47A NNA sing 349 n n C48 H48 NNA sing 350 n n C48 H48A NNA sing 351 n n # _atom_sites.entry_id 6XQT _atom_sites.fract_transf_matrix[1][1] 0.021498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NNA A 1 401 999 NNA NNA . D 2 NNA B 1 401 999 NNA NNA . E 3 HOH A 1 501 26 HOH HOH . E 3 HOH A 2 502 11 HOH HOH . E 3 HOH A 3 503 33 HOH HOH . E 3 HOH A 4 504 42 HOH HOH . E 3 HOH A 5 505 57 HOH HOH . E 3 HOH A 6 506 62 HOH HOH . E 3 HOH A 7 507 49 HOH HOH . E 3 HOH A 8 508 5 HOH HOH . E 3 HOH A 9 509 38 HOH HOH . E 3 HOH A 10 510 53 HOH HOH . E 3 HOH A 11 511 9 HOH HOH . E 3 HOH A 12 512 3 HOH HOH . E 3 HOH A 13 513 15 HOH HOH . E 3 HOH A 14 514 45 HOH HOH . E 3 HOH A 15 515 14 HOH HOH . E 3 HOH A 16 516 4 HOH HOH . E 3 HOH A 17 517 18 HOH HOH . E 3 HOH A 18 518 19 HOH HOH . E 3 HOH A 19 519 23 HOH HOH . E 3 HOH A 20 520 46 HOH HOH . E 3 HOH A 21 521 25 HOH HOH . E 3 HOH A 22 522 28 HOH HOH . E 3 HOH A 23 523 30 HOH HOH . E 3 HOH A 24 524 48 HOH HOH . E 3 HOH A 25 525 16 HOH HOH . E 3 HOH A 26 526 29 HOH HOH . E 3 HOH A 27 527 27 HOH HOH . E 3 HOH A 28 528 40 HOH HOH . E 3 HOH A 29 529 47 HOH HOH . F 3 HOH B 1 501 65 HOH HOH . F 3 HOH B 2 502 12 HOH HOH . F 3 HOH B 3 503 20 HOH HOH . F 3 HOH B 4 504 2 HOH HOH . F 3 HOH B 5 505 54 HOH HOH . F 3 HOH B 6 506 10 HOH HOH . F 3 HOH B 7 507 6 HOH HOH . F 3 HOH B 8 508 13 HOH HOH . F 3 HOH B 9 509 7 HOH HOH . F 3 HOH B 10 510 8 HOH HOH . F 3 HOH B 11 511 1 HOH HOH . F 3 HOH B 12 512 39 HOH HOH . F 3 HOH B 13 513 63 HOH HOH . F 3 HOH B 14 514 36 HOH HOH . F 3 HOH B 15 515 17 HOH HOH . F 3 HOH B 16 516 21 HOH HOH . F 3 HOH B 17 517 31 HOH HOH . F 3 HOH B 18 518 34 HOH HOH . F 3 HOH B 19 519 44 HOH HOH . F 3 HOH B 20 520 50 HOH HOH . F 3 HOH B 21 521 24 HOH HOH . F 3 HOH B 22 522 37 HOH HOH . F 3 HOH B 23 523 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NNA . . . C 2 -13.972 4.249 44.998 1 45.65 ? C1 NNA 401 A 1 HETATM 2 O O2 NNA . . . C 2 -14.781 3.668 45.656 1 46.97 ? O2 NNA 401 A 1 HETATM 3 N N3 NNA . . . C 2 -13.055 5.278 45.573 1 49.59 ? N3 NNA 401 A 1 HETATM 4 C C4 NNA . . . C 2 -13.086 5.695 47.014 1 54.79 ? C4 NNA 401 A 1 HETATM 5 C C5 NNA . . . C 2 -11.915 6.664 47.207 1 51.38 ? C5 NNA 401 A 1 HETATM 6 C C6 NNA . . . C 2 -13.034 4.465 47.965 1 50.87 ? C6 NNA 401 A 1 HETATM 7 C C7 NNA . . . C 2 -10.608 5.863 47.12 1 52.4 ? C7 NNA 401 A 1 HETATM 8 C C8 NNA . . . C 2 -11.644 3.924 48.364 1 57.18 ? C8 NNA 401 A 1 HETATM 9 C C9 NNA . . . C 2 -10.526 4.973 48.363 1 50.84 ? C9 NNA 401 A 1 HETATM 10 C C10 NNA . . . C 2 -14.419 6.492 47.21 1 51.7 ? C10 NNA 401 A 1 HETATM 11 S S11 NNA . . . C 2 -14.667 7.892 46.018 1 50.98 ? S11 NNA 401 A 1 HETATM 12 O O12 NNA . . . C 2 -13.974 7.355 44.824 1 58.35 ? O12 NNA 401 A 1 HETATM 13 O O13 NNA . . . C 2 -14.001 9.051 46.743 1 63.45 ? O13 NNA 401 A 1 HETATM 14 C C14 NNA . . . C 2 -16.512 8.07 45.836 1 58.56 ? C14 NNA 401 A 1 HETATM 15 C C15 NNA . . . C 2 -17.098 6.768 45.183 1 57.62 ? C15 NNA 401 A 1 HETATM 16 C C16 NNA . . . C 2 -17.138 8.288 47.253 1 53.15 ? C16 NNA 401 A 1 HETATM 17 C C17 NNA . . . C 2 -16.748 9.32 44.927 1 53.05 ? C17 NNA 401 A 1 HETATM 18 N N18 NNA . . . C 2 -13.857 3.961 43.542 1 44.01 ? N18 NNA 401 A 1 HETATM 19 C C19 NNA . . . C 2 -14.744 2.951 43.008 1 42.52 ? C19 NNA 401 A 1 HETATM 20 C C20 NNA . . . C 2 -15.314 3.357 41.628 1 41.51 ? C20 NNA 401 A 1 HETATM 21 C C21 NNA . . . C 2 -15.954 2.148 40.913 1 41.79 ? C21 NNA 401 A 1 HETATM 22 C C22 NNA . . . C 2 -16.414 4.388 41.949 1 42.6 ? C22 NNA 401 A 1 HETATM 23 C C23 NNA . . . C 2 -14.248 3.955 40.685 1 34.62 ? C23 NNA 401 A 1 HETATM 24 C C24 NNA . . . C 2 -13.954 1.642 42.955 1 42.99 ? C24 NNA 401 A 1 HETATM 25 O O25 NNA . . . C 2 -12.913 1.522 42.369 1 39.41 ? O25 NNA 401 A 1 HETATM 26 N N26 NNA . . . C 2 -14.536 0.459 43.677 1 41.87 ? N26 NNA 401 A 1 HETATM 27 C C27 NNA . . . C 2 -15.676 0.423 44.364 1 41.39 ? C27 NNA 401 A 1 HETATM 28 C C28 NNA . . . C 2 -13.8 -0.934 43.67 1 39.2 ? C28 NNA 401 A 1 HETATM 29 C C29 NNA . . . C 2 -14.272 -1.611 44.749 1 41.26 ? C29 NNA 401 A 1 HETATM 30 C C30 NNA . . . C 2 -15.549 -0.863 45.225 1 44.67 ? C30 NNA 401 A 1 HETATM 31 C C31 NNA . . . C 2 -14.528 -1.396 46.273 1 43.78 ? C31 NNA 401 A 1 HETATM 32 C C32 NNA . . . C 2 -15.044 -2.555 47.165 1 41.91 ? C32 NNA 401 A 1 HETATM 33 C C33 NNA . . . C 2 -13.684 -0.274 46.922 1 41.9 ? C33 NNA 401 A 1 HETATM 34 C C34 NNA . . . C 2 -14.09 -1.553 42.293 1 41.46 ? C34 NNA 401 A 1 HETATM 35 O O35 NNA . . . C 2 -15.215 -1.679 41.953 1 43.88 ? O35 NNA 401 A 1 HETATM 36 N N36 NNA . . . C 2 -12.983 -1.921 41.348 1 35.78 ? N36 NNA 401 A 1 HETATM 37 C C37 NNA . . . C 2 -13.337 -2.45 40.051 1 42.92 ? C37 NNA 401 A 1 HETATM 38 C C38 NNA . . . C 2 -12.885 -1.522 38.88 1 41.97 ? C38 NNA 401 A 1 HETATM 39 C C39 NNA . . . C 2 -12.361 -0.113 39.364 1 44.14 ? C39 NNA 401 A 1 HETATM 40 C C40 NNA . . . C 2 -12.374 1.073 38.331 1 44.08 ? C40 NNA 401 A 1 HETATM 41 C C41 NNA . . . C 2 -11.048 1.138 37.509 1 47.53 ? C41 NNA 401 A 1 HETATM 42 O O42 NNA . . . C 2 -13.18 -4.541 41.028 1 34.34 ? O42 NNA 401 A 1 HETATM 43 C C43 NNA . . . C 2 -12.681 -3.79 40.013 1 41.29 ? C43 NNA 401 A 1 HETATM 44 O O44 NNA . . . C 2 -12.54 -4.357 37.731 1 37.3 ? O44 NNA 401 A 1 HETATM 45 N N45 NNA . . . C 2 -14.369 -5.379 38.766 1 40.6 ? N45 NNA 401 A 1 HETATM 46 C C46 NNA . . . C 2 -14.947 -5.944 37.585 1 43.27 ? C46 NNA 401 A 1 HETATM 47 C C47 NNA . . . C 2 -15.741 -4.889 36.781 1 35.4 ? C47 NNA 401 A 1 HETATM 48 C C48 NNA . . . C 2 -16.487 -5.971 37.585 1 39.47 ? C48 NNA 401 A 1 HETATM 49 C C49 NNA . . . C 2 -13.159 -4.496 38.765 1 40.24 ? C49 NNA 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #