data_6XQT
#
_model_server_result.job_id            syrZVVmm3v6ImwkaedDRUQ 
_model_server_result.datetime_utc      '2024-11-08 16:51:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xqt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    6XQT 
#
_exptl.entry_id    6XQT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              709.98 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.48 
_cell.angle_gamma         90 
_cell.entry_id            6XQT 
_cell.length_a            46.516 
_cell.length_b            54.473 
_cell.length_c            114.491 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XQT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C43 NNA . A NNA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C43 NNA . B NNA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
#
_chem_comp.formula           'C36 H63 N5 O7 S' 
_chem_comp.formula_weight    709.98 
_chem_comp.id                NNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropylamino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Narlaprevir, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O2 NNA doub 237 n n 
C1 N3 NNA sing 238 n n 
C1 N18 NNA sing 239 n n 
N3 C4 NNA sing 240 n n 
C4 C5 NNA sing 241 n n 
C4 C6 NNA sing 242 n n 
C4 C10 NNA sing 243 n n 
C5 C7 NNA sing 244 n n 
C6 C8 NNA sing 245 n n 
C7 C9 NNA sing 246 n n 
C8 C9 NNA sing 247 n n 
C10 S11 NNA sing 248 n n 
S11 O12 NNA doub 249 n n 
S11 O13 NNA doub 250 n n 
S11 C14 NNA sing 251 n n 
C14 C15 NNA sing 252 n n 
C14 C16 NNA sing 253 n n 
C14 C17 NNA sing 254 n n 
N18 C19 NNA sing 255 n n 
C19 C20 NNA sing 256 n n 
C19 C24 NNA sing 257 n n 
C20 C21 NNA sing 258 n n 
C20 C22 NNA sing 259 n n 
C20 C23 NNA sing 260 n n 
C24 O25 NNA doub 261 n n 
C24 N26 NNA sing 262 n n 
N26 C27 NNA sing 263 n n 
N26 C28 NNA sing 264 n n 
C27 C30 NNA sing 265 n n 
C28 C29 NNA sing 266 n n 
C28 C34 NNA sing 267 n n 
C29 C30 NNA sing 268 n n 
C29 C31 NNA sing 269 n n 
C30 C31 NNA sing 270 n n 
C31 C32 NNA sing 271 n n 
C31 C33 NNA sing 272 n n 
C34 O35 NNA doub 273 n n 
C34 N36 NNA sing 274 n n 
N36 C37 NNA sing 275 n n 
C37 C38 NNA sing 276 n n 
C37 C43 NNA sing 277 n n 
C38 C39 NNA sing 278 n n 
C39 C40 NNA sing 279 n n 
C40 C41 NNA sing 280 n n 
O42 C43 NNA sing 281 n n 
C43 C49 NNA sing 282 n n 
O44 C49 NNA doub 283 n n 
N45 C46 NNA sing 284 n n 
N45 C49 NNA sing 285 n n 
C46 C47 NNA sing 286 n n 
C46 C48 NNA sing 287 n n 
C47 C48 NNA sing 288 n n 
N3 HN3 NNA sing 289 n n 
C5 H5 NNA sing 290 n n 
C5 H5A NNA sing 291 n n 
C6 H6 NNA sing 292 n n 
C6 H6A NNA sing 293 n n 
C7 H7 NNA sing 294 n n 
C7 H7A NNA sing 295 n n 
C8 H8 NNA sing 296 n n 
C8 H8A NNA sing 297 n n 
C9 H9 NNA sing 298 n n 
C9 H9A NNA sing 299 n n 
C10 H10 NNA sing 300 n n 
C10 H10A NNA sing 301 n n 
C15 H15 NNA sing 302 n n 
C15 H15A NNA sing 303 n n 
C15 H15B NNA sing 304 n n 
C16 H16 NNA sing 305 n n 
C16 H16A NNA sing 306 n n 
C16 H16B NNA sing 307 n n 
C17 H17 NNA sing 308 n n 
C17 H17A NNA sing 309 n n 
C17 H17B NNA sing 310 n n 
N18 HN18 NNA sing 311 n n 
C19 H19 NNA sing 312 n n 
C21 H21 NNA sing 313 n n 
C21 H21A NNA sing 314 n n 
C21 H21B NNA sing 315 n n 
C22 H22 NNA sing 316 n n 
C22 H22A NNA sing 317 n n 
C22 H22B NNA sing 318 n n 
C23 H23 NNA sing 319 n n 
C23 H23A NNA sing 320 n n 
C23 H23B NNA sing 321 n n 
C27 H27 NNA sing 322 n n 
C27 H27A NNA sing 323 n n 
C28 H28 NNA sing 324 n n 
C29 H29 NNA sing 325 n n 
C30 H30 NNA sing 326 n n 
C32 H32 NNA sing 327 n n 
C32 H32A NNA sing 328 n n 
C32 H32B NNA sing 329 n n 
C33 H33 NNA sing 330 n n 
C33 H33A NNA sing 331 n n 
C33 H33B NNA sing 332 n n 
N36 HN36 NNA sing 333 n n 
C37 H37 NNA sing 334 n n 
C38 H38 NNA sing 335 n n 
C38 H38A NNA sing 336 n n 
C39 H39 NNA sing 337 n n 
C39 H39A NNA sing 338 n n 
C40 H40 NNA sing 339 n n 
C40 H40A NNA sing 340 n n 
C41 H41 NNA sing 341 n n 
C41 H41A NNA sing 342 n n 
C41 H41B NNA sing 343 n n 
O42 HO42 NNA sing 344 n n 
C43 H43 NNA sing 345 n n 
N45 HN45 NNA sing 346 n n 
C46 H46 NNA sing 347 n n 
C47 H47 NNA sing 348 n n 
C47 H47A NNA sing 349 n n 
C48 H48 NNA sing 350 n n 
C48 H48A NNA sing 351 n n 
#
_atom_sites.entry_id                     6XQT 
_atom_sites.fract_transf_matrix[1][1]    0.021498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004364 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NNA A 1 401 999 NNA NNA . 
D 2 NNA B 1 401 999 NNA NNA . 
E 3 HOH A 1 501 26 HOH HOH . 
E 3 HOH A 2 502 11 HOH HOH . 
E 3 HOH A 3 503 33 HOH HOH . 
E 3 HOH A 4 504 42 HOH HOH . 
E 3 HOH A 5 505 57 HOH HOH . 
E 3 HOH A 6 506 62 HOH HOH . 
E 3 HOH A 7 507 49 HOH HOH . 
E 3 HOH A 8 508 5 HOH HOH . 
E 3 HOH A 9 509 38 HOH HOH . 
E 3 HOH A 10 510 53 HOH HOH . 
E 3 HOH A 11 511 9 HOH HOH . 
E 3 HOH A 12 512 3 HOH HOH . 
E 3 HOH A 13 513 15 HOH HOH . 
E 3 HOH A 14 514 45 HOH HOH . 
E 3 HOH A 15 515 14 HOH HOH . 
E 3 HOH A 16 516 4 HOH HOH . 
E 3 HOH A 17 517 18 HOH HOH . 
E 3 HOH A 18 518 19 HOH HOH . 
E 3 HOH A 19 519 23 HOH HOH . 
E 3 HOH A 20 520 46 HOH HOH . 
E 3 HOH A 21 521 25 HOH HOH . 
E 3 HOH A 22 522 28 HOH HOH . 
E 3 HOH A 23 523 30 HOH HOH . 
E 3 HOH A 24 524 48 HOH HOH . 
E 3 HOH A 25 525 16 HOH HOH . 
E 3 HOH A 26 526 29 HOH HOH . 
E 3 HOH A 27 527 27 HOH HOH . 
E 3 HOH A 28 528 40 HOH HOH . 
E 3 HOH A 29 529 47 HOH HOH . 
F 3 HOH B 1 501 65 HOH HOH . 
F 3 HOH B 2 502 12 HOH HOH . 
F 3 HOH B 3 503 20 HOH HOH . 
F 3 HOH B 4 504 2 HOH HOH . 
F 3 HOH B 5 505 54 HOH HOH . 
F 3 HOH B 6 506 10 HOH HOH . 
F 3 HOH B 7 507 6 HOH HOH . 
F 3 HOH B 8 508 13 HOH HOH . 
F 3 HOH B 9 509 7 HOH HOH . 
F 3 HOH B 10 510 8 HOH HOH . 
F 3 HOH B 11 511 1 HOH HOH . 
F 3 HOH B 12 512 39 HOH HOH . 
F 3 HOH B 13 513 63 HOH HOH . 
F 3 HOH B 14 514 36 HOH HOH . 
F 3 HOH B 15 515 17 HOH HOH . 
F 3 HOH B 16 516 21 HOH HOH . 
F 3 HOH B 17 517 31 HOH HOH . 
F 3 HOH B 18 518 34 HOH HOH . 
F 3 HOH B 19 519 44 HOH HOH . 
F 3 HOH B 20 520 50 HOH HOH . 
F 3 HOH B 21 521 24 HOH HOH . 
F 3 HOH B 22 522 37 HOH HOH . 
F 3 HOH B 23 523 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NNA . . . D 2 25.879 4.65 11.262 1 48.85 ? C1 NNA 401 B 1 
HETATM 2 O O2 NNA . . . D 2 26.747 4.154 10.615 1 54.71 ? O2 NNA 401 B 1 
HETATM 3 N N3 NNA . . . D 2 24.92 5.646 10.708 1 52.7 ? N3 NNA 401 B 1 
HETATM 4 C C4 NNA . . . D 2 25.014 6.128 9.302 1 56.45 ? C4 NNA 401 B 1 
HETATM 5 C C5 NNA . . . D 2 23.848 7.097 9.098 1 51.16 ? C5 NNA 401 B 1 
HETATM 6 C C6 NNA . . . D 2 25.003 4.952 8.302 1 50.03 ? C6 NNA 401 B 1 
HETATM 7 C C7 NNA . . . D 2 22.543 6.3 9.209 1 53.19 ? C7 NNA 401 B 1 
HETATM 8 C C8 NNA . . . D 2 23.646 4.24 8.217 1 50.99 ? C8 NNA 401 B 1 
HETATM 9 C C9 NNA . . . D 2 22.503 5.25 8.09 1 53.65 ? C9 NNA 401 B 1 
HETATM 10 C C10 NNA . . . D 2 26.345 6.932 9.197 1 57.3 ? C10 NNA 401 B 1 
HETATM 11 S S11 NNA . . . D 2 26.554 8.323 10.424 1 58.96 ? S11 NNA 401 B 1 
HETATM 12 O O12 NNA . . . D 2 25.836 7.931 11.671 1 58.45 ? O12 NNA 401 B 1 
HETATM 13 O O13 NNA . . . D 2 25.943 9.473 9.69 1 59.76 ? O13 NNA 401 B 1 
HETATM 14 C C14 NNA . . . D 2 28.402 8.516 10.671 1 63.83 ? C14 NNA 401 B 1 
HETATM 15 C C15 NNA . . . D 2 29.049 7.158 11.138 1 59.15 ? C15 NNA 401 B 1 
HETATM 16 C C16 NNA . . . D 2 29.052 8.981 9.326 1 60.83 ? C16 NNA 401 B 1 
HETATM 17 C C17 NNA . . . D 2 28.549 9.628 11.76 1 54.39 ? C17 NNA 401 B 1 
HETATM 18 N N18 NNA . . . D 2 25.714 4.284 12.682 1 50.16 ? N18 NNA 401 B 1 
HETATM 19 C C19 NNA . . . D 2 26.632 3.309 13.205 1 50.27 ? C19 NNA 401 B 1 
HETATM 20 C C20 NNA . . . D 2 27.154 3.721 14.608 1 49.7 ? C20 NNA 401 B 1 
HETATM 21 C C21 NNA . . . D 2 27.829 2.498 15.274 1 46.95 ? C21 NNA 401 B 1 
HETATM 22 C C22 NNA . . . D 2 28.197 4.87 14.461 1 48.8 ? C22 NNA 401 B 1 
HETATM 23 C C23 NNA . . . D 2 25.979 4.164 15.508 1 44.91 ? C23 NNA 401 B 1 
HETATM 24 C C24 NNA . . . D 2 25.828 2.007 13.251 1 47.42 ? C24 NNA 401 B 1 
HETATM 25 O O25 NNA . . . D 2 24.779 1.919 13.81 1 44.27 ? O25 NNA 401 B 1 
HETATM 26 N N26 NNA . . . D 2 26.395 0.805 12.552 1 44.65 ? N26 NNA 401 B 1 
HETATM 27 C C27 NNA . . . D 2 27.539 0.79 11.89 1 42.33 ? C27 NNA 401 B 1 
HETATM 28 C C28 NNA . . . D 2 25.675 -0.6 12.536 1 42.73 ? C28 NNA 401 B 1 
HETATM 29 C C29 NNA . . . D 2 26.204 -1.293 11.496 1 42.27 ? C29 NNA 401 B 1 
HETATM 30 C C30 NNA . . . D 2 27.463 -0.505 11.043 1 47.47 ? C30 NNA 401 B 1 
HETATM 31 C C31 NNA . . . D 2 26.481 -1.076 9.982 1 48.12 ? C31 NNA 401 B 1 
HETATM 32 C C32 NNA . . . D 2 26.997 -2.273 9.134 1 44.47 ? C32 NNA 401 B 1 
HETATM 33 C C33 NNA . . . D 2 25.568 -0.002 9.341 1 39.26 ? C33 NNA 401 B 1 
HETATM 34 C C34 NNA . . . D 2 25.858 -1.246 13.919 1 46.26 ? C34 NNA 401 B 1 
HETATM 35 O O35 NNA . . . D 2 26.944 -1.386 14.366 1 50.08 ? O35 NNA 401 B 1 
HETATM 36 N N36 NNA . . . D 2 24.657 -1.648 14.716 1 41.11 ? N36 NNA 401 B 1 
HETATM 37 C C37 NNA . . . D 2 24.894 -2.244 16.022 1 48.03 ? C37 NNA 401 B 1 
HETATM 38 C C38 NNA . . . D 2 24.143 -1.397 17.072 1 44.57 ? C38 NNA 401 B 1 
HETATM 39 C C39 NNA . . . D 2 24.926 -0.037 17.227 1 44.47 ? C39 NNA 401 B 1 
HETATM 40 C C40 NNA . . . D 2 24.068 1.15 17.785 1 46.75 ? C40 NNA 401 B 1 
HETATM 41 C C41 NNA . . . D 2 22.64 0.741 18.26 1 42.23 ? C41 NNA 401 B 1 
HETATM 42 O O42 NNA . . . D 2 25.061 -4.351 14.884 1 39.65 ? O42 NNA 401 B 1 
HETATM 43 C C43 NNA . . . D 2 24.449 -3.706 15.934 1 46.25 ? C43 NNA 401 B 1 
HETATM 44 O O44 NNA . . . D 2 24.187 -4.225 18.252 1 39.9 ? O44 NNA 401 B 1 
HETATM 45 N N45 NNA . . . D 2 26.041 -5.238 17.295 1 46.26 ? N45 NNA 401 B 1 
HETATM 46 C C46 NNA . . . D 2 26.47 -5.847 18.536 1 46.06 ? C46 NNA 401 B 1 
HETATM 47 C C47 NNA . . . D 2 27.574 -4.997 19.176 1 40.44 ? C47 NNA 401 B 1 
HETATM 48 C C48 NNA . . . D 2 27.913 -6.359 18.551 1 41.38 ? C48 NNA 401 B 1 
HETATM 49 C C49 NNA . . . D 2 24.823 -4.379 17.274 1 43.63 ? C49 NNA 401 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           49 
#