data_6XQU # _model_server_result.job_id gSBCK-lAwJsrj-TrITcc8A _model_server_result.datetime_utc '2025-06-30 19:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XQU # _exptl.entry_id 6XQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'boceprevir (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.944 _cell.angle_gamma 90 _cell.entry_id 6XQU _cell.length_a 46.277 _cell.length_b 53.407 _cell.length_c 113.204 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 46.277 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id U5G _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id U5G _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.827 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H47 N5 O5' _chem_comp.formula_weight 521.693 _chem_comp.id U5G _chem_comp.mon_nstd_flag . _chem_comp.name 'boceprevir (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 U5G doub 358 n n C06 C07 U5G sing 359 n n C06 C05 U5G sing 360 n n C08 C07 U5G sing 361 n n C08 C09 U5G sing 362 n n C02 C03 U5G sing 363 n n C02 N37 U5G sing 364 n n C03 C05 U5G sing 365 n n C03 O04 U5G sing 366 n n C07 C10 U5G sing 367 n n C05 N11 U5G sing 368 n n N11 C12 U5G sing 369 n n O35 C21 U5G doub 370 n n C09 C10 U5G sing 371 n n C32 C30 U5G sing 372 n n C12 C13 U5G sing 373 n n C12 O36 U5G doub 374 n n C13 N20 U5G sing 375 n n C13 C14 U5G sing 376 n n C25 C23 U5G sing 377 n n C21 N20 U5G sing 378 n n C21 C22 U5G sing 379 n n N29 C30 U5G sing 380 n n N29 C28 U5G sing 381 n n N27 C28 U5G sing 382 n n N27 C22 U5G sing 383 n n C31 C30 U5G sing 384 n n C17 C16 U5G sing 385 n n C30 C33 U5G sing 386 n n N20 C19 U5G sing 387 n n C14 C16 U5G sing 388 n n C14 C15 U5G sing 389 n n C28 O34 U5G doub 390 n n C22 C23 U5G sing 391 n n C16 C18 U5G sing 392 n n C16 C15 U5G sing 393 n n C23 C24 U5G sing 394 n n C23 C26 U5G sing 395 n n C19 C15 U5G sing 396 n n N29 H1 U5G sing 397 n n C31 H2 U5G sing 398 n n C31 H3 U5G sing 399 n n C31 H4 U5G sing 400 n n C32 H5 U5G sing 401 n n C32 H6 U5G sing 402 n n C32 H7 U5G sing 403 n n C33 H8 U5G sing 404 n n C33 H9 U5G sing 405 n n C33 H10 U5G sing 406 n n N27 H11 U5G sing 407 n n C22 H12 U5G sing 408 n n C24 H13 U5G sing 409 n n C24 H14 U5G sing 410 n n C24 H15 U5G sing 411 n n C25 H16 U5G sing 412 n n C25 H17 U5G sing 413 n n C25 H18 U5G sing 414 n n C26 H19 U5G sing 415 n n C26 H20 U5G sing 416 n n C26 H21 U5G sing 417 n n C19 H22 U5G sing 418 n n C19 H23 U5G sing 419 n n C13 H24 U5G sing 420 n n C14 H25 U5G sing 421 n n C15 H26 U5G sing 422 n n C17 H27 U5G sing 423 n n C17 H28 U5G sing 424 n n C17 H29 U5G sing 425 n n C18 H30 U5G sing 426 n n C18 H31 U5G sing 427 n n C18 H32 U5G sing 428 n n N11 H33 U5G sing 429 n n C05 H34 U5G sing 430 n n C06 H35 U5G sing 431 n n C06 H36 U5G sing 432 n n C07 H37 U5G sing 433 n n C10 H38 U5G sing 434 n n C10 H39 U5G sing 435 n n C08 H40 U5G sing 436 n n C08 H41 U5G sing 437 n n C09 H42 U5G sing 438 n n C09 H43 U5G sing 439 n n O04 H44 U5G sing 440 n n C03 H45 U5G sing 441 n n N37 H46 U5G sing 442 n n N37 H47 U5G sing 443 n n # _atom_sites.entry_id 6XQU _atom_sites.fract_transf_matrix[1][1] 0.021609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U5G A 1 401 401 U5G U5G . C 3 HOH A 1 501 16 HOH HOH . C 3 HOH A 2 502 33 HOH HOH . C 3 HOH A 3 503 13 HOH HOH . C 3 HOH A 4 504 14 HOH HOH . C 3 HOH A 5 505 19 HOH HOH . C 3 HOH A 6 506 21 HOH HOH . C 3 HOH A 7 507 49 HOH HOH . C 3 HOH A 8 508 77 HOH HOH . C 3 HOH A 9 509 27 HOH HOH . C 3 HOH A 10 510 46 HOH HOH . C 3 HOH A 11 511 17 HOH HOH . C 3 HOH A 12 512 22 HOH HOH . C 3 HOH A 13 513 4 HOH HOH . C 3 HOH A 14 514 2 HOH HOH . C 3 HOH A 15 515 24 HOH HOH . C 3 HOH A 16 516 1 HOH HOH . C 3 HOH A 17 517 35 HOH HOH . C 3 HOH A 18 518 9 HOH HOH . C 3 HOH A 19 519 23 HOH HOH . C 3 HOH A 20 520 3 HOH HOH . C 3 HOH A 21 521 6 HOH HOH . C 3 HOH A 22 522 41 HOH HOH . C 3 HOH A 23 523 5 HOH HOH . C 3 HOH A 24 524 31 HOH HOH . C 3 HOH A 25 525 8 HOH HOH . C 3 HOH A 26 526 64 HOH HOH . C 3 HOH A 27 527 79 HOH HOH . C 3 HOH A 28 528 18 HOH HOH . C 3 HOH A 29 529 37 HOH HOH . C 3 HOH A 30 530 38 HOH HOH . C 3 HOH A 31 531 81 HOH HOH . C 3 HOH A 32 532 26 HOH HOH . C 3 HOH A 33 533 74 HOH HOH . C 3 HOH A 34 534 32 HOH HOH . C 3 HOH A 35 535 48 HOH HOH . C 3 HOH A 36 536 20 HOH HOH . C 3 HOH A 37 537 59 HOH HOH . C 3 HOH A 38 538 7 HOH HOH . C 3 HOH A 39 539 51 HOH HOH . C 3 HOH A 40 540 12 HOH HOH . C 3 HOH A 41 541 45 HOH HOH . C 3 HOH A 42 542 62 HOH HOH . C 3 HOH A 43 543 29 HOH HOH . C 3 HOH A 44 544 34 HOH HOH . C 3 HOH A 45 545 63 HOH HOH . C 3 HOH A 46 546 30 HOH HOH . C 3 HOH A 47 547 56 HOH HOH . C 3 HOH A 48 548 15 HOH HOH . C 3 HOH A 49 549 10 HOH HOH . C 3 HOH A 50 550 85 HOH HOH . C 3 HOH A 51 551 78 HOH HOH . C 3 HOH A 52 552 36 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 50 HOH HOH . C 3 HOH A 55 555 67 HOH HOH . C 3 HOH A 56 556 53 HOH HOH . C 3 HOH A 57 557 28 HOH HOH . C 3 HOH A 58 558 40 HOH HOH . C 3 HOH A 59 559 71 HOH HOH . C 3 HOH A 60 560 43 HOH HOH . C 3 HOH A 61 561 84 HOH HOH . C 3 HOH A 62 562 65 HOH HOH . C 3 HOH A 63 563 66 HOH HOH . C 3 HOH A 64 564 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 U5G . . . B 2 3.012 5.196 16.482 1 36.75 ? C28 U5G 401 A 1 HETATM 2 N N29 U5G . . . B 2 3.92 6.133 16.853 1 36.26 ? N29 U5G 401 A 1 HETATM 3 O O34 U5G . . . B 2 1.944 4.983 17.069 1 33.33 ? O34 U5G 401 A 1 HETATM 4 C C30 U5G . . . B 2 3.91 6.904 18.121 1 37.48 ? C30 U5G 401 A 1 HETATM 5 C C31 U5G . . . B 2 3.997 5.947 19.303 1 32.61 ? C31 U5G 401 A 1 HETATM 6 C C32 U5G . . . B 2 5.114 7.832 18.125 1 35.56 ? C32 U5G 401 A 1 HETATM 7 C C33 U5G . . . B 2 2.628 7.72 18.204 1 40.36 ? C33 U5G 401 A 1 HETATM 8 N N27 U5G . . . B 2 3.399 4.511 15.378 1 29.32 ? N27 U5G 401 A 1 HETATM 9 C C22 U5G . . . B 2 2.549 3.451 14.871 1 27.04 ? C22 U5G 401 A 1 HETATM 10 C C23 U5G . . . B 2 1.93 3.801 13.487 1 30.92 ? C23 U5G 401 A 1 HETATM 11 C C24 U5G . . . B 2 1.102 2.619 12.978 1 29.04 ? C24 U5G 401 A 1 HETATM 12 C C25 U5G . . . B 2 3.017 4.123 12.461 1 28.76 ? C25 U5G 401 A 1 HETATM 13 C C26 U5G . . . B 2 1.02 5.021 13.632 1 32.34 ? C26 U5G 401 A 1 HETATM 14 C C21 U5G . . . B 2 3.375 2.154 14.882 1 32.21 ? C21 U5G 401 A 1 HETATM 15 O O35 U5G . . . B 2 4.495 2.146 14.4 1 28.25 ? O35 U5G 401 A 1 HETATM 16 N N20 U5G . . . B 2 2.839 1.05 15.425 1 32.13 ? N20 U5G 401 A 1 HETATM 17 C C19 U5G . . . B 2 1.575 0.899 16.155 1 27.72 ? C19 U5G 401 A 1 HETATM 18 C C13 U5G . . . B 2 3.571 -0.208 15.309 1 28.01 ? C13 U5G 401 A 1 HETATM 19 C C14 U5G . . . B 2 2.979 -1.087 16.431 1 30.21 ? C14 U5G 401 A 1 HETATM 20 C C15 U5G . . . B 2 1.712 -0.411 16.918 1 30.09 ? C15 U5G 401 A 1 HETATM 21 C C16 U5G . . . B 2 2.865 -0.629 17.868 1 29.85 ? C16 U5G 401 A 1 HETATM 22 C C17 U5G . . . B 2 3.669 0.58 18.361 1 26.84 ? C17 U5G 401 A 1 HETATM 23 C C18 U5G . . . B 2 2.742 -1.738 18.913 1 28.16 ? C18 U5G 401 A 1 HETATM 24 C C12 U5G . . . B 2 3.326 -0.842 13.932 1 29.49 ? C12 U5G 401 A 1 HETATM 25 O O36 U5G . . . B 2 2.195 -0.931 13.469 1 31.32 ? O36 U5G 401 A 1 HETATM 26 N N11 U5G . . . B 2 4.42 -1.285 13.301 1 25.64 ? N11 U5G 401 A 1 HETATM 27 C C05 U5G . . . B 2 4.403 -1.916 11.988 1 28.98 ? C05 U5G 401 A 1 HETATM 28 C C06 U5G . . . B 2 5.398 -1.194 11.077 1 27.47 ? C06 U5G 401 A 1 HETATM 29 C C07 U5G . . . B 2 5.219 0.317 10.974 1 34.33 ? C07 U5G 401 A 1 HETATM 30 C C10 U5G . . . B 2 3.979 0.836 10.229 1 30.15 ? C10 U5G 401 A 1 HETATM 31 C C08 U5G . . . B 2 6.161 1.065 10.012 1 33.33 ? C08 U5G 401 A 1 HETATM 32 C C09 U5G . . . B 2 4.929 1.334 9.082 1 33.32 ? C09 U5G 401 A 1 HETATM 33 O O04 U5G . . . B 2 4.058 -3.841 13.253 1 25.09 ? O04 U5G 401 A 1 HETATM 34 C C03 U5G . . . B 2 4.799 -3.401 12.135 1 28 ? C03 U5G 401 A 1 HETATM 35 O O01 U5G . . . B 2 4.968 -4.037 9.849 1 26.21 ? O01 U5G 401 A 1 HETATM 36 C C02 U5G . . . B 2 4.36 -4.187 10.915 1 28.45 ? C02 U5G 401 A 1 HETATM 37 N N37 U5G . . . B 2 3.378 -5.058 11.071 1 28.98 ? N37 U5G 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #