data_6XS9
#
_model_server_result.job_id            ZC51gqyErQjljTVIxcNJkA 
_model_server_result.datetime_utc      '2024-10-19 13:23:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xs9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":101}' 
#
_entry.id    6XS9 
#
_exptl.entry_id    6XS9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XS9 
_cell.length_a            119.44 
_cell.length_b            119.44 
_cell.length_c            125.63 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XS9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,M,N,P,Q,R 1 1 
B,D,K,L,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 24 B ARG 14 1_555 B N CSO 25 B CSO 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 B C CSO 25 B CSO 15 1_555 B N ASN 26 B ASN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 C C09 48V 1 C 48V 0 1_555 C N TYR 2 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? 
covale ? covale4 C N01 48V 1 C 48V 0 1_555 C C GLY 15 C GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale5 D C09 48V 1 D 48V 0 1_555 D N TYR 2 D TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale6 D N01 48V 1 D 48V 0 1_555 D C GLY 15 D GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale7 E C09 48V 1 E 48V 0 1_555 E N TYR 2 E TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale8 E N01 48V 1 E 48V 0 1_555 E C GLY 15 E GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale9 F C09 48V 1 F 48V 0 1_555 F N TYR 2 F TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
covale ? covale10 F N01 48V 1 F 48V 0 1_555 F C GLY 15 F GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     6XS9 
_atom_sites.fract_transf_matrix[1][1]    0.008372 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MLI A 1 201 201 MLI MLI . 
H 4 MLI A 1 202 202 MLI MLI . 
I 5 GOL A 1 203 203 GOL GOL . 
J 5 GOL A 1 204 204 GOL GOL . 
K 5 GOL B 1 201 201 GOL GOL . 
L 6 O4B B 1 202 202 O4B O4B . 
M 5 GOL F 1 101 101 GOL GOL . 
N 7 HOH A 1 301 301 HOH HOH . 
N 7 HOH A 2 302 302 HOH HOH . 
N 7 HOH A 3 303 303 HOH HOH . 
N 7 HOH A 4 304 304 HOH HOH . 
N 7 HOH A 5 305 305 HOH HOH . 
N 7 HOH A 6 306 306 HOH HOH . 
N 7 HOH A 7 307 307 HOH HOH . 
N 7 HOH A 8 308 308 HOH HOH . 
N 7 HOH A 9 309 309 HOH HOH . 
N 7 HOH A 10 310 310 HOH HOH . 
N 7 HOH A 11 311 311 HOH HOH . 
N 7 HOH A 12 312 312 HOH HOH . 
N 7 HOH A 13 313 313 HOH HOH . 
N 7 HOH A 14 314 314 HOH HOH . 
O 7 HOH B 1 301 301 HOH HOH . 
O 7 HOH B 2 302 302 HOH HOH . 
O 7 HOH B 3 303 303 HOH HOH . 
O 7 HOH B 4 304 304 HOH HOH . 
O 7 HOH B 5 305 305 HOH HOH . 
O 7 HOH B 6 306 306 HOH HOH . 
O 7 HOH B 7 307 307 HOH HOH . 
O 7 HOH B 8 308 308 HOH HOH . 
O 7 HOH B 9 309 309 HOH HOH . 
O 7 HOH B 10 310 310 HOH HOH . 
O 7 HOH B 11 311 311 HOH HOH . 
O 7 HOH B 12 312 312 HOH HOH . 
O 7 HOH B 13 313 313 HOH HOH . 
O 7 HOH B 14 314 314 HOH HOH . 
P 7 HOH C 1 101 101 HOH HOH . 
Q 7 HOH E 1 101 101 HOH HOH . 
Q 7 HOH E 2 102 102 HOH HOH . 
R 7 HOH F 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 5 4.293 47.971 -15.682 1 112.95 ? C1 GOL 101 F 1 
HETATM 2 O O1 GOL . . . M 5 5.441 47.189 -15.923 1 88.47 ? O1 GOL 101 F 1 
HETATM 3 C C2 GOL . . . M 5 4.346 48.511 -14.26 1 115.35 ? C2 GOL 101 F 1 
HETATM 4 O O2 GOL . . . M 5 3.388 49.532 -14.089 1 105.1 ? O2 GOL 101 F 1 
HETATM 5 C C3 GOL . . . M 5 4.096 47.39 -13.26 1 120.36 ? C3 GOL 101 F 1 
HETATM 6 O O3 GOL . . . M 5 2.892 46.719 -13.566 1 108.72 ? O3 GOL 101 F 1 
HETATM 7 H H11 GOL . . . M 5 3.397 47.363 -15.814 1 135.54 ? H11 GOL 101 F 1 
HETATM 8 H H12 GOL . . . M 5 4.252 48.797 -16.391 1 135.54 ? H12 GOL 101 F 1 
HETATM 9 H HO1 GOL . . . M 5 5.38 46.785 -16.814 1 106.16 ? HO1 GOL 101 F 1 
HETATM 10 H H2 GOL . . . M 5 5.343 48.914 -14.083 1 138.42 ? H2 GOL 101 F 1 
HETATM 11 H HO2 GOL . . . M 5 2.49 49.162 -14.221 1 126.11 ? HO2 GOL 101 F 1 
HETATM 12 H H31 GOL . . . M 5 4.038 47.804 -12.253 1 144.43 ? H31 GOL 101 F 1 
HETATM 13 H H32 GOL . . . M 5 4.925 46.684 -13.287 1 144.43 ? H32 GOL 101 F 1 
HETATM 14 H HO3 GOL . . . M 5 2.181 47.376 -13.716 1 130.47 ? HO3 GOL 101 F 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#