data_6XS9 # _model_server_result.job_id 2Fq7Sh05bn9b9YlEIrd60w _model_server_result.datetime_utc '2024-10-19 13:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":202}' # _entry.id 6XS9 # _exptl.entry_id 6XS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.315 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XS9 _cell.length_a 119.44 _cell.length_b 119.44 _cell.length_c 125.63 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,M,N,P,Q,R 1 1 B,D,K,L,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 24 B ARG 14 1_555 B N CSO 25 B CSO 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B C CSO 25 B CSO 15 1_555 B N ASN 26 B ASN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C09 48V 1 C 48V 0 1_555 C N TYR 2 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale4 C N01 48V 1 C 48V 0 1_555 C C GLY 15 C GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 D C09 48V 1 D 48V 0 1_555 D N TYR 2 D TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale6 D N01 48V 1 D 48V 0 1_555 D C GLY 15 D GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 E C09 48V 1 E 48V 0 1_555 E N TYR 2 E TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale8 E N01 48V 1 E 48V 0 1_555 E C GLY 15 E GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale9 F C09 48V 1 F 48V 0 1_555 F N TYR 2 F TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale10 F N01 48V 1 F 48V 0 1_555 F C GLY 15 F GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C12 H24 O6' _chem_comp.formula_weight 264.315 _chem_comp.id O4B _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAM O4B sing 292 n n CAA CAB O4B sing 293 n n OAM CAC O4B sing 294 n n CAC CAD O4B sing 295 n n CAD OAO O4B sing 296 n n OAO CAG O4B sing 297 n n CAG CAH O4B sing 298 n n CAH OAQ O4B sing 299 n n OAQ CAK O4B sing 300 n n CAK CAL O4B sing 301 n n CAL OAR O4B sing 302 n n OAR CAJ O4B sing 303 n n CAJ CAI O4B sing 304 n n CAI OAP O4B sing 305 n n OAP CAF O4B sing 306 n n CAF CAE O4B sing 307 n n CAE OAN O4B sing 308 n n OAN CAB O4B sing 309 n n CAA HAA1 O4B sing 310 n n CAA HAA2 O4B sing 311 n n CAB HAB1 O4B sing 312 n n CAB HAB2 O4B sing 313 n n CAC HAC1 O4B sing 314 n n CAC HAC2 O4B sing 315 n n CAD HAD1 O4B sing 316 n n CAD HAD2 O4B sing 317 n n CAG HAG1 O4B sing 318 n n CAG HAG2 O4B sing 319 n n CAH HAH1 O4B sing 320 n n CAH HAH2 O4B sing 321 n n CAK HAK1 O4B sing 322 n n CAK HAK2 O4B sing 323 n n CAL HAL1 O4B sing 324 n n CAL HAL2 O4B sing 325 n n CAJ HAJ1 O4B sing 326 n n CAJ HAJ2 O4B sing 327 n n CAI HAI1 O4B sing 328 n n CAI HAI2 O4B sing 329 n n CAF HAF1 O4B sing 330 n n CAF HAF2 O4B sing 331 n n CAE HAE1 O4B sing 332 n n CAE HAE2 O4B sing 333 n n # _atom_sites.entry_id 6XS9 _atom_sites.fract_transf_matrix[1][1] 0.008372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MLI A 1 201 201 MLI MLI . H 4 MLI A 1 202 202 MLI MLI . I 5 GOL A 1 203 203 GOL GOL . J 5 GOL A 1 204 204 GOL GOL . K 5 GOL B 1 201 201 GOL GOL . L 6 O4B B 1 202 202 O4B O4B . M 5 GOL F 1 101 101 GOL GOL . N 7 HOH A 1 301 301 HOH HOH . N 7 HOH A 2 302 302 HOH HOH . N 7 HOH A 3 303 303 HOH HOH . N 7 HOH A 4 304 304 HOH HOH . N 7 HOH A 5 305 305 HOH HOH . N 7 HOH A 6 306 306 HOH HOH . N 7 HOH A 7 307 307 HOH HOH . N 7 HOH A 8 308 308 HOH HOH . N 7 HOH A 9 309 309 HOH HOH . N 7 HOH A 10 310 310 HOH HOH . N 7 HOH A 11 311 311 HOH HOH . N 7 HOH A 12 312 312 HOH HOH . N 7 HOH A 13 313 313 HOH HOH . N 7 HOH A 14 314 314 HOH HOH . O 7 HOH B 1 301 301 HOH HOH . O 7 HOH B 2 302 302 HOH HOH . O 7 HOH B 3 303 303 HOH HOH . O 7 HOH B 4 304 304 HOH HOH . O 7 HOH B 5 305 305 HOH HOH . O 7 HOH B 6 306 306 HOH HOH . O 7 HOH B 7 307 307 HOH HOH . O 7 HOH B 8 308 308 HOH HOH . O 7 HOH B 9 309 309 HOH HOH . O 7 HOH B 10 310 310 HOH HOH . O 7 HOH B 11 311 311 HOH HOH . O 7 HOH B 12 312 312 HOH HOH . O 7 HOH B 13 313 313 HOH HOH . O 7 HOH B 14 314 314 HOH HOH . P 7 HOH C 1 101 101 HOH HOH . Q 7 HOH E 1 101 101 HOH HOH . Q 7 HOH E 2 102 102 HOH HOH . R 7 HOH F 1 201 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA O4B . . . L 6 5.95 56.318 -37.16 1 150.23 ? CAA O4B 202 B 1 HETATM 2 O OAM O4B . . . L 6 6.935 57.065 -37.814 1 158.49 ? OAM O4B 202 B 1 HETATM 3 C CAC O4B . . . L 6 6.486 58.304 -38.284 1 153.59 ? CAC O4B 202 B 1 HETATM 4 C CAD O4B . . . L 6 7.426 58.807 -39.378 1 149.08 ? CAD O4B 202 B 1 HETATM 5 O OAO O4B . . . L 6 7.373 57.936 -40.471 1 150.7 ? OAO O4B 202 B 1 HETATM 6 C CAG O4B . . . L 6 7.794 58.598 -41.63 1 145.96 ? CAG O4B 202 B 1 HETATM 7 C CAH O4B . . . L 6 7.978 57.579 -42.753 1 128.37 ? CAH O4B 202 B 1 HETATM 8 O OAQ O4B . . . L 6 9.117 56.814 -42.472 1 121.21 ? OAQ O4B 202 B 1 HETATM 9 C CAK O4B . . . L 6 8.938 55.47 -42.825 1 133.3 ? CAK O4B 202 B 1 HETATM 10 C CAL O4B . . . L 6 10.134 54.666 -42.321 1 129.34 ? CAL O4B 202 B 1 HETATM 11 O OAR O4B . . . L 6 9.922 54.299 -40.985 1 139.81 ? OAR O4B 202 B 1 HETATM 12 C CAJ O4B . . . L 6 11.005 54.689 -40.185 1 151.18 ? CAJ O4B 202 B 1 HETATM 13 C CAI O4B . . . L 6 10.927 53.991 -38.828 1 145.56 ? CAI O4B 202 B 1 HETATM 14 O OAP O4B . . . L 6 9.643 54.119 -38.29 1 142.04 ? OAP O4B 202 B 1 HETATM 15 C CAF O4B . . . L 6 9.5 53.239 -37.211 1 145.93 ? CAF O4B 202 B 1 HETATM 16 C CAE O4B . . . L 6 8.319 53.68 -36.351 1 149.97 ? CAE O4B 202 B 1 HETATM 17 O OAN O4B . . . L 6 7.458 54.464 -37.131 1 146.28 ? OAN O4B 202 B 1 HETATM 18 C CAB O4B . . . L 6 6.608 55.228 -36.321 1 145.55 ? CAB O4B 202 B 1 HETATM 19 H HAA1 O4B . . . L 6 5.364 55.911 -37.817 1 180.28 ? HAA1 O4B 202 B 1 HETATM 20 H HAA2 O4B . . . L 6 5.432 56.902 -36.583 1 180.28 ? HAA2 O4B 202 B 1 HETATM 21 H HAB1 O4B . . . L 6 7.121 55.635 -35.606 1 174.66 ? HAB1 O4B 202 B 1 HETATM 22 H HAB2 O4B . . . L 6 5.923 54.655 -35.941 1 174.66 ? HAB2 O4B 202 B 1 HETATM 23 H HAC1 O4B . . . L 6 5.592 58.206 -38.647 1 184.3 ? HAC1 O4B 202 B 1 HETATM 24 H HAC2 O4B . . . L 6 6.471 58.941 -37.553 1 184.3 ? HAC2 O4B 202 B 1 HETATM 25 H HAD1 O4B . . . L 6 7.151 59.694 -39.658 1 178.89 ? HAD1 O4B 202 B 1 HETATM 26 H HAD2 O4B . . . L 6 8.332 58.842 -39.035 1 178.89 ? HAD2 O4B 202 B 1 HETATM 27 H HAG1 O4B . . . L 6 7.126 59.251 -41.891 1 175.15 ? HAG1 O4B 202 B 1 HETATM 28 H HAG2 O4B . . . L 6 8.636 59.047 -41.459 1 175.15 ? HAG2 O4B 202 B 1 HETATM 29 H HAH1 O4B . . . L 6 8.094 58.042 -43.598 1 154.04 ? HAH1 O4B 202 B 1 HETATM 30 H HAH2 O4B . . . L 6 7.2 57.002 -42.801 1 154.04 ? HAH2 O4B 202 B 1 HETATM 31 H HAK1 O4B . . . L 6 8.877 55.392 -43.79 1 159.96 ? HAK1 O4B 202 B 1 HETATM 32 H HAK2 O4B . . . L 6 8.124 55.133 -42.419 1 159.96 ? HAK2 O4B 202 B 1 HETATM 33 H HAL1 O4B . . . L 6 10.239 53.868 -42.863 1 155.21 ? HAL1 O4B 202 B 1 HETATM 34 H HAL2 O4B . . . L 6 10.937 55.207 -42.384 1 155.21 ? HAL2 O4B 202 B 1 HETATM 35 H HAJ1 O4B . . . L 6 10.979 55.649 -40.055 1 181.42 ? HAJ1 O4B 202 B 1 HETATM 36 H HAJ2 O4B . . . L 6 11.834 54.445 -40.625 1 181.42 ? HAJ2 O4B 202 B 1 HETATM 37 H HAI1 O4B . . . L 6 11.57 54.394 -38.224 1 174.67 ? HAI1 O4B 202 B 1 HETATM 38 H HAI2 O4B . . . L 6 11.137 53.05 -38.939 1 174.67 ? HAI2 O4B 202 B 1 HETATM 39 H HAF1 O4B . . . L 6 10.309 53.247 -36.677 1 175.11 ? HAF1 O4B 202 B 1 HETATM 40 H HAF2 O4B . . . L 6 9.34 52.342 -37.544 1 175.11 ? HAF2 O4B 202 B 1 HETATM 41 H HAE1 O4B . . . L 6 7.844 52.899 -36.026 1 179.96 ? HAE1 O4B 202 B 1 HETATM 42 H HAE2 O4B . . . L 6 8.642 54.2 -35.599 1 179.96 ? HAE2 O4B 202 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #