data_6XSX # _model_server_result.job_id WgQVXEya1CQOgzX-diCorA _model_server_result.datetime_utc '2024-10-20 08:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1306}' # _entry.id 6XSX # _exptl.entry_id 6XSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.2 _cell.angle_gamma 90 _cell.entry_id 6XSX _cell.length_a 60.168 _cell.length_b 54.553 _cell.length_c 90.984 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 6XSX _atom_sites.fract_transf_matrix[1][1] 0.01662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000928 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 1301 1 MES MES . C 2 MES A 1 1302 2 MES MES . D 3 EDO A 1 1303 1 EDO EDO . E 3 EDO A 1 1304 3 EDO EDO . F 3 EDO A 1 1305 4 EDO EDO . G 3 EDO A 1 1306 6 EDO EDO . H 3 EDO A 1 1307 7 EDO EDO . I 4 HOH A 1 1401 57 HOH HOH . I 4 HOH A 2 1402 77 HOH HOH . I 4 HOH A 3 1403 108 HOH HOH . I 4 HOH A 4 1404 130 HOH HOH . I 4 HOH A 5 1405 16 HOH HOH . I 4 HOH A 6 1406 214 HOH HOH . I 4 HOH A 7 1407 200 HOH HOH . I 4 HOH A 8 1408 196 HOH HOH . I 4 HOH A 9 1409 206 HOH HOH . I 4 HOH A 10 1410 223 HOH HOH . I 4 HOH A 11 1411 109 HOH HOH . I 4 HOH A 12 1412 154 HOH HOH . I 4 HOH A 13 1413 84 HOH HOH . I 4 HOH A 14 1414 99 HOH HOH . I 4 HOH A 15 1415 182 HOH HOH . I 4 HOH A 16 1416 224 HOH HOH . I 4 HOH A 17 1417 126 HOH HOH . I 4 HOH A 18 1418 198 HOH HOH . I 4 HOH A 19 1419 190 HOH HOH . I 4 HOH A 20 1420 131 HOH HOH . I 4 HOH A 21 1421 215 HOH HOH . I 4 HOH A 22 1422 66 HOH HOH . I 4 HOH A 23 1423 92 HOH HOH . I 4 HOH A 24 1424 33 HOH HOH . I 4 HOH A 25 1425 39 HOH HOH . I 4 HOH A 26 1426 50 HOH HOH . I 4 HOH A 27 1427 174 HOH HOH . I 4 HOH A 28 1428 72 HOH HOH . I 4 HOH A 29 1429 110 HOH HOH . I 4 HOH A 30 1430 23 HOH HOH . I 4 HOH A 31 1431 183 HOH HOH . I 4 HOH A 32 1432 209 HOH HOH . I 4 HOH A 33 1433 104 HOH HOH . I 4 HOH A 34 1434 155 HOH HOH . I 4 HOH A 35 1435 69 HOH HOH . I 4 HOH A 36 1436 171 HOH HOH . I 4 HOH A 37 1437 195 HOH HOH . I 4 HOH A 38 1438 217 HOH HOH . I 4 HOH A 39 1439 153 HOH HOH . I 4 HOH A 40 1440 68 HOH HOH . I 4 HOH A 41 1441 127 HOH HOH . I 4 HOH A 42 1442 5 HOH HOH . I 4 HOH A 43 1443 161 HOH HOH . I 4 HOH A 44 1444 132 HOH HOH . I 4 HOH A 45 1445 28 HOH HOH . I 4 HOH A 46 1446 30 HOH HOH . I 4 HOH A 47 1447 11 HOH HOH . I 4 HOH A 48 1448 138 HOH HOH . I 4 HOH A 49 1449 95 HOH HOH . I 4 HOH A 50 1450 78 HOH HOH . I 4 HOH A 51 1451 233 HOH HOH . I 4 HOH A 52 1452 116 HOH HOH . I 4 HOH A 53 1453 156 HOH HOH . I 4 HOH A 54 1454 15 HOH HOH . I 4 HOH A 55 1455 45 HOH HOH . I 4 HOH A 56 1456 148 HOH HOH . I 4 HOH A 57 1457 120 HOH HOH . I 4 HOH A 58 1458 191 HOH HOH . I 4 HOH A 59 1459 187 HOH HOH . I 4 HOH A 60 1460 55 HOH HOH . I 4 HOH A 61 1461 29 HOH HOH . I 4 HOH A 62 1462 26 HOH HOH . I 4 HOH A 63 1463 216 HOH HOH . I 4 HOH A 64 1464 90 HOH HOH . I 4 HOH A 65 1465 74 HOH HOH . I 4 HOH A 66 1466 220 HOH HOH . I 4 HOH A 67 1467 119 HOH HOH . I 4 HOH A 68 1468 231 HOH HOH . I 4 HOH A 69 1469 46 HOH HOH . I 4 HOH A 70 1470 71 HOH HOH . I 4 HOH A 71 1471 40 HOH HOH . I 4 HOH A 72 1472 49 HOH HOH . I 4 HOH A 73 1473 24 HOH HOH . I 4 HOH A 74 1474 22 HOH HOH . I 4 HOH A 75 1475 83 HOH HOH . I 4 HOH A 76 1476 159 HOH HOH . I 4 HOH A 77 1477 101 HOH HOH . I 4 HOH A 78 1478 60 HOH HOH . I 4 HOH A 79 1479 80 HOH HOH . I 4 HOH A 80 1480 63 HOH HOH . I 4 HOH A 81 1481 96 HOH HOH . I 4 HOH A 82 1482 47 HOH HOH . I 4 HOH A 83 1483 14 HOH HOH . I 4 HOH A 84 1484 184 HOH HOH . I 4 HOH A 85 1485 144 HOH HOH . I 4 HOH A 86 1486 128 HOH HOH . I 4 HOH A 87 1487 79 HOH HOH . I 4 HOH A 88 1488 12 HOH HOH . I 4 HOH A 89 1489 158 HOH HOH . I 4 HOH A 90 1490 25 HOH HOH . I 4 HOH A 91 1491 146 HOH HOH . I 4 HOH A 92 1492 165 HOH HOH . I 4 HOH A 93 1493 219 HOH HOH . I 4 HOH A 94 1494 100 HOH HOH . I 4 HOH A 95 1495 107 HOH HOH . I 4 HOH A 96 1496 208 HOH HOH . I 4 HOH A 97 1497 172 HOH HOH . I 4 HOH A 98 1498 44 HOH HOH . I 4 HOH A 99 1499 21 HOH HOH . I 4 HOH A 100 1500 232 HOH HOH . I 4 HOH A 101 1501 87 HOH HOH . I 4 HOH A 102 1502 56 HOH HOH . I 4 HOH A 103 1503 43 HOH HOH . I 4 HOH A 104 1504 82 HOH HOH . I 4 HOH A 105 1505 59 HOH HOH . I 4 HOH A 106 1506 134 HOH HOH . I 4 HOH A 107 1507 157 HOH HOH . I 4 HOH A 108 1508 147 HOH HOH . I 4 HOH A 109 1509 192 HOH HOH . I 4 HOH A 110 1510 167 HOH HOH . I 4 HOH A 111 1511 54 HOH HOH . I 4 HOH A 112 1512 20 HOH HOH . I 4 HOH A 113 1513 7 HOH HOH . I 4 HOH A 114 1514 114 HOH HOH . I 4 HOH A 115 1515 58 HOH HOH . I 4 HOH A 116 1516 98 HOH HOH . I 4 HOH A 117 1517 177 HOH HOH . I 4 HOH A 118 1518 176 HOH HOH . I 4 HOH A 119 1519 186 HOH HOH . I 4 HOH A 120 1520 163 HOH HOH . I 4 HOH A 121 1521 65 HOH HOH . I 4 HOH A 122 1522 35 HOH HOH . I 4 HOH A 123 1523 218 HOH HOH . I 4 HOH A 124 1524 137 HOH HOH . I 4 HOH A 125 1525 76 HOH HOH . I 4 HOH A 126 1526 6 HOH HOH . I 4 HOH A 127 1527 18 HOH HOH . I 4 HOH A 128 1528 121 HOH HOH . I 4 HOH A 129 1529 81 HOH HOH . I 4 HOH A 130 1530 105 HOH HOH . I 4 HOH A 131 1531 27 HOH HOH . I 4 HOH A 132 1532 91 HOH HOH . I 4 HOH A 133 1533 62 HOH HOH . I 4 HOH A 134 1534 52 HOH HOH . I 4 HOH A 135 1535 61 HOH HOH . I 4 HOH A 136 1536 152 HOH HOH . I 4 HOH A 137 1537 193 HOH HOH . I 4 HOH A 138 1538 106 HOH HOH . I 4 HOH A 139 1539 10 HOH HOH . I 4 HOH A 140 1540 203 HOH HOH . I 4 HOH A 141 1541 199 HOH HOH . I 4 HOH A 142 1542 168 HOH HOH . I 4 HOH A 143 1543 118 HOH HOH . I 4 HOH A 144 1544 164 HOH HOH . I 4 HOH A 145 1545 111 HOH HOH . I 4 HOH A 146 1546 181 HOH HOH . I 4 HOH A 147 1547 194 HOH HOH . I 4 HOH A 148 1548 149 HOH HOH . I 4 HOH A 149 1549 4 HOH HOH . I 4 HOH A 150 1550 207 HOH HOH . I 4 HOH A 151 1551 41 HOH HOH . I 4 HOH A 152 1552 205 HOH HOH . I 4 HOH A 153 1553 211 HOH HOH . I 4 HOH A 154 1554 122 HOH HOH . I 4 HOH A 155 1555 222 HOH HOH . I 4 HOH A 156 1556 85 HOH HOH . I 4 HOH A 157 1557 88 HOH HOH . I 4 HOH A 158 1558 13 HOH HOH . I 4 HOH A 159 1559 93 HOH HOH . I 4 HOH A 160 1560 189 HOH HOH . I 4 HOH A 161 1561 135 HOH HOH . I 4 HOH A 162 1562 151 HOH HOH . I 4 HOH A 163 1563 124 HOH HOH . I 4 HOH A 164 1564 53 HOH HOH . I 4 HOH A 165 1565 64 HOH HOH . I 4 HOH A 166 1566 70 HOH HOH . I 4 HOH A 167 1567 160 HOH HOH . I 4 HOH A 168 1568 1 HOH HOH . I 4 HOH A 169 1569 169 HOH HOH . I 4 HOH A 170 1570 142 HOH HOH . I 4 HOH A 171 1571 8 HOH HOH . I 4 HOH A 172 1572 112 HOH HOH . I 4 HOH A 173 1573 2 HOH HOH . I 4 HOH A 174 1574 97 HOH HOH . I 4 HOH A 175 1575 94 HOH HOH . I 4 HOH A 176 1576 48 HOH HOH . I 4 HOH A 177 1577 123 HOH HOH . I 4 HOH A 178 1578 103 HOH HOH . I 4 HOH A 179 1579 17 HOH HOH . I 4 HOH A 180 1580 19 HOH HOH . I 4 HOH A 181 1581 129 HOH HOH . I 4 HOH A 182 1582 67 HOH HOH . I 4 HOH A 183 1583 115 HOH HOH . I 4 HOH A 184 1584 178 HOH HOH . I 4 HOH A 185 1585 133 HOH HOH . I 4 HOH A 186 1586 32 HOH HOH . I 4 HOH A 187 1587 31 HOH HOH . I 4 HOH A 188 1588 173 HOH HOH . I 4 HOH A 189 1589 86 HOH HOH . I 4 HOH A 190 1590 42 HOH HOH . I 4 HOH A 191 1591 113 HOH HOH . I 4 HOH A 192 1592 36 HOH HOH . I 4 HOH A 193 1593 34 HOH HOH . I 4 HOH A 194 1594 229 HOH HOH . I 4 HOH A 195 1595 9 HOH HOH . I 4 HOH A 196 1596 73 HOH HOH . I 4 HOH A 197 1597 228 HOH HOH . I 4 HOH A 198 1598 139 HOH HOH . I 4 HOH A 199 1599 175 HOH HOH . I 4 HOH A 200 1600 170 HOH HOH . I 4 HOH A 201 1601 141 HOH HOH . I 4 HOH A 202 1602 226 HOH HOH . I 4 HOH A 203 1603 234 HOH HOH . I 4 HOH A 204 1604 125 HOH HOH . I 4 HOH A 205 1605 3 HOH HOH . I 4 HOH A 206 1606 75 HOH HOH . I 4 HOH A 207 1607 213 HOH HOH . I 4 HOH A 208 1608 235 HOH HOH . I 4 HOH A 209 1609 37 HOH HOH . I 4 HOH A 210 1610 185 HOH HOH . I 4 HOH A 211 1611 51 HOH HOH . I 4 HOH A 212 1612 212 HOH HOH . I 4 HOH A 213 1613 210 HOH HOH . I 4 HOH A 214 1614 201 HOH HOH . I 4 HOH A 215 1615 140 HOH HOH . I 4 HOH A 216 1616 143 HOH HOH . I 4 HOH A 217 1617 227 HOH HOH . I 4 HOH A 218 1618 221 HOH HOH . I 4 HOH A 219 1619 150 HOH HOH . I 4 HOH A 220 1620 188 HOH HOH . I 4 HOH A 221 1621 197 HOH HOH . I 4 HOH A 222 1622 136 HOH HOH . I 4 HOH A 223 1623 162 HOH HOH . I 4 HOH A 224 1624 225 HOH HOH . I 4 HOH A 225 1625 166 HOH HOH . I 4 HOH A 226 1626 204 HOH HOH . I 4 HOH A 227 1627 38 HOH HOH . I 4 HOH A 228 1628 230 HOH HOH . I 4 HOH A 229 1629 145 HOH HOH . I 4 HOH A 230 1630 179 HOH HOH . I 4 HOH A 231 1631 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 14.536 -0.222 -28.733 1 32.55 ? C1 EDO 1306 A 1 HETATM 2 O O1 EDO . . . G 3 14.155 0.929 -27.998 1 30.44 ? O1 EDO 1306 A 1 HETATM 3 C C2 EDO . . . G 3 15.962 -0.183 -29.148 1 33.79 ? C2 EDO 1306 A 1 HETATM 4 O O2 EDO . . . G 3 16.794 0.369 -28.15 1 33.16 ? O2 EDO 1306 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #