data_6XTA
#
_model_server_result.job_id            eAnCk-qrUQYdD7NO_mrgiQ 
_model_server_result.datetime_utc      '2024-10-11 00:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xta 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":611}' 
#
_entry.id    6XTA 
#
_exptl.entry_id    6XTA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XTA 
_cell.length_a            154.04 
_cell.length_b            154.04 
_cell.length_c            127.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XTA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 4 3 1 TGY NAG C2 O2 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 530 NAG 
2 n B FUC 2 B 2 FUC A 532 FUC 
3 n C NAG 1 C 1 NAG A 533 NAG 
3 n C NAG 2 C 2 NAG A 534 NAG 
2 n D NAG 1 D 1 NAG A 535 NAG 
2 n D FUC 2 D 2 FUC A 540 FUC 
4 n E NAG 1 E 1 NAG A 536 NAG 
4 n E NAG 2 E 2 NAG A 537 NAG 
4 n E TGY 3 E 3 TGY A 538 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? 
covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale9 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale11 E O6 NAG . E NAG 1 1_555 E C2 TGY . E TGY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 260 n n 
C1 O1 NAG sing 261 n n 
C1 O5 NAG sing 262 n n 
C1 H1 NAG sing 263 n n 
C2 C3 NAG sing 264 n n 
C2 N2 NAG sing 265 n n 
C2 H2 NAG sing 266 n n 
C3 C4 NAG sing 267 n n 
C3 O3 NAG sing 268 n n 
C3 H3 NAG sing 269 n n 
C4 C5 NAG sing 270 n n 
C4 O4 NAG sing 271 n n 
C4 H4 NAG sing 272 n n 
C5 C6 NAG sing 273 n n 
C5 O5 NAG sing 274 n n 
C5 H5 NAG sing 275 n n 
C6 O6 NAG sing 276 n n 
C6 H61 NAG sing 277 n n 
C6 H62 NAG sing 278 n n 
C7 C8 NAG sing 279 n n 
C7 N2 NAG sing 280 n n 
C7 O7 NAG doub 281 n n 
C8 H81 NAG sing 282 n n 
C8 H82 NAG sing 283 n n 
C8 H83 NAG sing 284 n n 
N2 HN2 NAG sing 285 n n 
O1 HO1 NAG sing 286 n n 
O3 HO3 NAG sing 287 n n 
O4 HO4 NAG sing 288 n n 
O6 HO6 NAG sing 289 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6XTA 
_atom_sites.fract_transf_matrix[1][1]    0.006492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 NAG A 1 610 539 NAG NAG . 
G 5 NAG A 1 611 541 NAG NAG . 
H 6 O0Z A 1 612 601 O0Z 445 . 
I 7 SO4 A 1 613 1 SO4 SO4 . 
J 7 SO4 A 1 614 2 SO4 SO4 . 
K 8 CL A 1 615 1 CL CL . 
L 9 HOH A 1 701 6 HOH HOH . 
L 9 HOH A 2 702 28 HOH HOH . 
L 9 HOH A 3 703 43 HOH HOH . 
L 9 HOH A 4 704 45 HOH HOH . 
L 9 HOH A 5 705 54 HOH HOH . 
L 9 HOH A 6 706 15 HOH HOH . 
L 9 HOH A 7 707 52 HOH HOH . 
L 9 HOH A 8 708 49 HOH HOH . 
L 9 HOH A 9 709 2 HOH HOH . 
L 9 HOH A 10 710 24 HOH HOH . 
L 9 HOH A 11 711 14 HOH HOH . 
L 9 HOH A 12 712 30 HOH HOH . 
L 9 HOH A 13 713 23 HOH HOH . 
L 9 HOH A 14 714 17 HOH HOH . 
L 9 HOH A 15 715 26 HOH HOH . 
L 9 HOH A 16 716 36 HOH HOH . 
L 9 HOH A 17 717 18 HOH HOH . 
L 9 HOH A 18 718 51 HOH HOH . 
L 9 HOH A 19 719 37 HOH HOH . 
L 9 HOH A 20 720 40 HOH HOH . 
L 9 HOH A 21 721 55 HOH HOH . 
L 9 HOH A 22 722 1 HOH HOH . 
L 9 HOH A 23 723 32 HOH HOH . 
L 9 HOH A 24 724 31 HOH HOH . 
L 9 HOH A 25 725 21 HOH HOH . 
L 9 HOH A 26 726 38 HOH HOH . 
L 9 HOH A 27 727 8 HOH HOH . 
L 9 HOH A 28 728 3 HOH HOH . 
L 9 HOH A 29 729 7 HOH HOH . 
L 9 HOH A 30 730 44 HOH HOH . 
L 9 HOH A 31 731 20 HOH HOH . 
L 9 HOH A 32 732 9 HOH HOH . 
L 9 HOH A 33 733 19 HOH HOH . 
L 9 HOH A 34 734 25 HOH HOH . 
L 9 HOH A 35 735 10 HOH HOH . 
L 9 HOH A 36 736 11 HOH HOH . 
L 9 HOH A 37 737 35 HOH HOH . 
L 9 HOH A 38 738 47 HOH HOH . 
L 9 HOH A 39 739 27 HOH HOH . 
L 9 HOH A 40 740 34 HOH HOH . 
L 9 HOH A 41 741 48 HOH HOH . 
L 9 HOH A 42 742 4 HOH HOH . 
L 9 HOH A 43 743 5 HOH HOH . 
L 9 HOH A 44 744 13 HOH HOH . 
L 9 HOH A 45 745 12 HOH HOH . 
L 9 HOH A 46 746 42 HOH HOH . 
L 9 HOH A 47 747 22 HOH HOH . 
L 9 HOH A 48 748 39 HOH HOH . 
L 9 HOH A 49 749 56 HOH HOH . 
L 9 HOH A 50 750 33 HOH HOH . 
L 9 HOH A 51 751 53 HOH HOH . 
L 9 HOH A 52 752 50 HOH HOH . 
L 9 HOH A 53 753 41 HOH HOH . 
L 9 HOH A 54 754 29 HOH HOH . 
L 9 HOH A 55 755 57 HOH HOH . 
L 9 HOH A 56 756 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 5 162.654 107.639 15.985 1 127.16 ? C1 NAG 611 A 1 
HETATM 2 C C2 NAG . . . G 5 164.099 108.154 15.889 1 129.21 ? C2 NAG 611 A 1 
HETATM 3 C C3 NAG . . . G 5 164.141 109.509 15.175 1 128.83 ? C3 NAG 611 A 1 
HETATM 4 C C4 NAG . . . G 5 163.382 109.461 13.853 1 135.67 ? C4 NAG 611 A 1 
HETATM 5 C C5 NAG . . . G 5 161.973 108.913 14.062 1 129.07 ? C5 NAG 611 A 1 
HETATM 6 C C6 NAG . . . G 5 161.206 108.731 12.77 1 126.43 ? C6 NAG 611 A 1 
HETATM 7 C C7 NAG . . . G 5 166.003 108.4 17.446 1 130.04 ? C7 NAG 611 A 1 
HETATM 8 C C8 NAG . . . G 5 166.412 108.478 18.887 1 118.2 ? C8 NAG 611 A 1 
HETATM 9 N N2 NAG . . . G 5 164.692 108.252 17.216 1 130.1 ? N2 NAG 611 A 1 
HETATM 10 O O3 NAG . . . G 5 165.497 109.866 14.928 1 128.94 ? O3 NAG 611 A 1 
HETATM 11 O O4 NAG . . . G 5 163.3 110.763 13.281 1 134.01 ? O4 NAG 611 A 1 
HETATM 12 O O5 NAG . . . G 5 162.056 107.621 14.677 1 130.6 ? O5 NAG 611 A 1 
HETATM 13 O O6 NAG . . . G 5 160.433 109.88 12.449 1 119.56 ? O6 NAG 611 A 1 
HETATM 14 O O7 NAG . . . G 5 166.82 108.476 16.534 1 137.65 ? O7 NAG 611 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#