data_6XTZ # _model_server_result.job_id Z7TTyUhuKFXcLhXRIUxOMQ _model_server_result.datetime_utc '2024-11-23 07:20:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xtz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6XTZ # _exptl.entry_id 6XTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XTZ _cell.length_a 63.691 _cell.length_b 77.38 _cell.length_c 118.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 80 1_555 A SG CYS 48 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 40 A CYS 110 1_555 A SG CYS 236 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 49 A CYS 119 1_555 A SG CYS 239 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 171 A CYS 241 1_555 A SG CYS 322 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 226 A CYS 296 1_555 A SG CYS 258 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 247 A CYS 317 1_555 A SG CYS 483 A CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 251 A CYS 321 1_555 A SG CYS 468 A CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 9 A ASN 79 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6XTZ _atom_sites.fract_transf_matrix[1][1] 0.015701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 902 NAG NAG . C 3 TRS A 1 702 1001 TRS TRS . D 4 GOL A 1 703 801 GOL GOL . E 4 GOL A 1 704 1101 GOL GOL . F 4 GOL A 1 705 1102 GOL GOL . G 4 GOL A 1 706 1103 GOL GOL . H 5 O18 A 1 707 1001 O18 PMS . I 6 HOH A 1 801 90 HOH HOH . I 6 HOH A 2 802 65 HOH HOH . I 6 HOH A 3 803 60 HOH HOH . I 6 HOH A 4 804 11 HOH HOH . I 6 HOH A 5 805 1 HOH HOH . I 6 HOH A 6 806 68 HOH HOH . I 6 HOH A 7 807 70 HOH HOH . I 6 HOH A 8 808 22 HOH HOH . I 6 HOH A 9 809 36 HOH HOH . I 6 HOH A 10 810 17 HOH HOH . I 6 HOH A 11 811 35 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 5 HOH HOH . I 6 HOH A 14 814 6 HOH HOH . I 6 HOH A 15 815 71 HOH HOH . I 6 HOH A 16 816 49 HOH HOH . I 6 HOH A 17 817 4 HOH HOH . I 6 HOH A 18 818 84 HOH HOH . I 6 HOH A 19 819 91 HOH HOH . I 6 HOH A 20 820 23 HOH HOH . I 6 HOH A 21 821 80 HOH HOH . I 6 HOH A 22 822 21 HOH HOH . I 6 HOH A 23 823 45 HOH HOH . I 6 HOH A 24 824 28 HOH HOH . I 6 HOH A 25 825 9 HOH HOH . I 6 HOH A 26 826 51 HOH HOH . I 6 HOH A 27 827 48 HOH HOH . I 6 HOH A 28 828 77 HOH HOH . I 6 HOH A 29 829 14 HOH HOH . I 6 HOH A 30 830 83 HOH HOH . I 6 HOH A 31 831 2 HOH HOH . I 6 HOH A 32 832 63 HOH HOH . I 6 HOH A 33 833 37 HOH HOH . I 6 HOH A 34 834 8 HOH HOH . I 6 HOH A 35 835 27 HOH HOH . I 6 HOH A 36 836 19 HOH HOH . I 6 HOH A 37 837 66 HOH HOH . I 6 HOH A 38 838 30 HOH HOH . I 6 HOH A 39 839 31 HOH HOH . I 6 HOH A 40 840 39 HOH HOH . I 6 HOH A 41 841 29 HOH HOH . I 6 HOH A 42 842 3 HOH HOH . I 6 HOH A 43 843 61 HOH HOH . I 6 HOH A 44 844 25 HOH HOH . I 6 HOH A 45 845 7 HOH HOH . I 6 HOH A 46 846 86 HOH HOH . I 6 HOH A 47 847 76 HOH HOH . I 6 HOH A 48 848 15 HOH HOH . I 6 HOH A 49 849 46 HOH HOH . I 6 HOH A 50 850 42 HOH HOH . I 6 HOH A 51 851 88 HOH HOH . I 6 HOH A 52 852 16 HOH HOH . I 6 HOH A 53 853 72 HOH HOH . I 6 HOH A 54 854 54 HOH HOH . I 6 HOH A 55 855 62 HOH HOH . I 6 HOH A 56 856 47 HOH HOH . I 6 HOH A 57 857 44 HOH HOH . I 6 HOH A 58 858 85 HOH HOH . I 6 HOH A 59 859 18 HOH HOH . I 6 HOH A 60 860 50 HOH HOH . I 6 HOH A 61 861 56 HOH HOH . I 6 HOH A 62 862 10 HOH HOH . I 6 HOH A 63 863 78 HOH HOH . I 6 HOH A 64 864 79 HOH HOH . I 6 HOH A 65 865 87 HOH HOH . I 6 HOH A 66 866 20 HOH HOH . I 6 HOH A 67 867 75 HOH HOH . I 6 HOH A 68 868 69 HOH HOH . I 6 HOH A 69 869 24 HOH HOH . I 6 HOH A 70 870 92 HOH HOH . I 6 HOH A 71 871 64 HOH HOH . I 6 HOH A 72 872 89 HOH HOH . I 6 HOH A 73 873 82 HOH HOH . I 6 HOH A 74 874 41 HOH HOH . I 6 HOH A 75 875 26 HOH HOH . I 6 HOH A 76 876 52 HOH HOH . I 6 HOH A 77 877 81 HOH HOH . I 6 HOH A 78 878 59 HOH HOH . I 6 HOH A 79 879 58 HOH HOH . I 6 HOH A 80 880 53 HOH HOH . I 6 HOH A 81 881 93 HOH HOH . I 6 HOH A 82 882 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 4.757 -7.562 1.33 1 80.5 ? C1 GOL 704 A 1 HETATM 2 O O1 GOL . . . E 4 5.471 -8.016 2.436 1 80.78 ? O1 GOL 704 A 1 HETATM 3 C C2 GOL . . . E 4 5.452 -6.268 0.852 1 86.06 ? C2 GOL 704 A 1 HETATM 4 O O2 GOL . . . E 4 4.737 -5.63 -0.15 1 88.44 ? O2 GOL 704 A 1 HETATM 5 C C3 GOL . . . E 4 5.587 -5.395 2.121 1 86.3 ? C3 GOL 704 A 1 HETATM 6 O O3 GOL . . . E 4 5.877 -4.104 1.687 1 83.67 ? O3 GOL 704 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #