data_6XTZ # _model_server_result.job_id ZMV2paRzJ-5iPjIOL_trcA _model_server_result.datetime_utc '2024-11-23 07:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xtz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":707}' # _entry.id 6XTZ # _exptl.entry_id 6XTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.486 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-palmitoleoyl serine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XTZ _cell.length_a 63.691 _cell.length_b 77.38 _cell.length_c 118.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 80 1_555 A SG CYS 48 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 40 A CYS 110 1_555 A SG CYS 236 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 49 A CYS 119 1_555 A SG CYS 239 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 171 A CYS 241 1_555 A SG CYS 322 A CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 226 A CYS 296 1_555 A SG CYS 258 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 247 A CYS 317 1_555 A SG CYS 483 A CYS 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 251 A CYS 321 1_555 A SG CYS 468 A CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 9 A ASN 79 1_555 B C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C19 H35 N O4' _chem_comp.formula_weight 341.486 _chem_comp.id O18 _chem_comp.mon_nstd_flag n _chem_comp.name 'O-palmitoleoyl serine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2S)-2-azanyl-3-[(Z)-hexadec-9-enoyl]oxy-propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA O18 sing 280 n n O C O18 doub 281 n n CA C O18 sing 282 n n CA CB O18 sing 283 n n CB OG O18 sing 284 n n OG C1 O18 sing 285 n n O11 C1 O18 doub 286 n n C1 C2 O18 sing 287 n n C2 C3 O18 sing 288 n n C3 C4 O18 sing 289 n n C4 C5 O18 sing 290 n n C5 C6 O18 sing 291 n n C6 C7 O18 sing 292 n n C7 C8 O18 sing 293 n n C9 C8 O18 sing 294 n n C9 C10 O18 doub 295 z n C10 C11 O18 sing 296 n n C11 C12 O18 sing 297 n n C12 C13 O18 sing 298 n n C15 C16 O18 sing 299 n n C15 C14 O18 sing 300 n n C13 C14 O18 sing 301 n n CA HA O18 sing 302 n n CB HB3 O18 sing 303 n n CB HB2 O18 sing 304 n n C2 H4 O18 sing 305 n n C2 H5 O18 sing 306 n n C3 H6 O18 sing 307 n n C3 H7 O18 sing 308 n n C4 H8 O18 sing 309 n n C4 H9 O18 sing 310 n n C5 H10 O18 sing 311 n n C5 H11 O18 sing 312 n n C6 H12 O18 sing 313 n n C6 H13 O18 sing 314 n n C7 H14 O18 sing 315 n n C7 H15 O18 sing 316 n n C8 H16 O18 sing 317 n n C8 H17 O18 sing 318 n n C9 H18 O18 sing 319 n n C10 H19 O18 sing 320 n n C11 H20 O18 sing 321 n n C11 H21 O18 sing 322 n n C12 H22 O18 sing 323 n n C12 H23 O18 sing 324 n n C13 H24 O18 sing 325 n n C13 H25 O18 sing 326 n n C14 H26 O18 sing 327 n n C14 H27 O18 sing 328 n n C15 H28 O18 sing 329 n n C15 H29 O18 sing 330 n n C16 H30 O18 sing 331 n n C16 H31 O18 sing 332 n n C16 H32 O18 sing 333 n n N H O18 sing 334 n n N H2 O18 sing 335 n n C OXT O18 sing 336 n n OXT HXT O18 sing 337 n n # _atom_sites.entry_id 6XTZ _atom_sites.fract_transf_matrix[1][1] 0.015701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 701 902 NAG NAG . C 3 TRS A 1 702 1001 TRS TRS . D 4 GOL A 1 703 801 GOL GOL . E 4 GOL A 1 704 1101 GOL GOL . F 4 GOL A 1 705 1102 GOL GOL . G 4 GOL A 1 706 1103 GOL GOL . H 5 O18 A 1 707 1001 O18 PMS . I 6 HOH A 1 801 90 HOH HOH . I 6 HOH A 2 802 65 HOH HOH . I 6 HOH A 3 803 60 HOH HOH . I 6 HOH A 4 804 11 HOH HOH . I 6 HOH A 5 805 1 HOH HOH . I 6 HOH A 6 806 68 HOH HOH . I 6 HOH A 7 807 70 HOH HOH . I 6 HOH A 8 808 22 HOH HOH . I 6 HOH A 9 809 36 HOH HOH . I 6 HOH A 10 810 17 HOH HOH . I 6 HOH A 11 811 35 HOH HOH . I 6 HOH A 12 812 12 HOH HOH . I 6 HOH A 13 813 5 HOH HOH . I 6 HOH A 14 814 6 HOH HOH . I 6 HOH A 15 815 71 HOH HOH . I 6 HOH A 16 816 49 HOH HOH . I 6 HOH A 17 817 4 HOH HOH . I 6 HOH A 18 818 84 HOH HOH . I 6 HOH A 19 819 91 HOH HOH . I 6 HOH A 20 820 23 HOH HOH . I 6 HOH A 21 821 80 HOH HOH . I 6 HOH A 22 822 21 HOH HOH . I 6 HOH A 23 823 45 HOH HOH . I 6 HOH A 24 824 28 HOH HOH . I 6 HOH A 25 825 9 HOH HOH . I 6 HOH A 26 826 51 HOH HOH . I 6 HOH A 27 827 48 HOH HOH . I 6 HOH A 28 828 77 HOH HOH . I 6 HOH A 29 829 14 HOH HOH . I 6 HOH A 30 830 83 HOH HOH . I 6 HOH A 31 831 2 HOH HOH . I 6 HOH A 32 832 63 HOH HOH . I 6 HOH A 33 833 37 HOH HOH . I 6 HOH A 34 834 8 HOH HOH . I 6 HOH A 35 835 27 HOH HOH . I 6 HOH A 36 836 19 HOH HOH . I 6 HOH A 37 837 66 HOH HOH . I 6 HOH A 38 838 30 HOH HOH . I 6 HOH A 39 839 31 HOH HOH . I 6 HOH A 40 840 39 HOH HOH . I 6 HOH A 41 841 29 HOH HOH . I 6 HOH A 42 842 3 HOH HOH . I 6 HOH A 43 843 61 HOH HOH . I 6 HOH A 44 844 25 HOH HOH . I 6 HOH A 45 845 7 HOH HOH . I 6 HOH A 46 846 86 HOH HOH . I 6 HOH A 47 847 76 HOH HOH . I 6 HOH A 48 848 15 HOH HOH . I 6 HOH A 49 849 46 HOH HOH . I 6 HOH A 50 850 42 HOH HOH . I 6 HOH A 51 851 88 HOH HOH . I 6 HOH A 52 852 16 HOH HOH . I 6 HOH A 53 853 72 HOH HOH . I 6 HOH A 54 854 54 HOH HOH . I 6 HOH A 55 855 62 HOH HOH . I 6 HOH A 56 856 47 HOH HOH . I 6 HOH A 57 857 44 HOH HOH . I 6 HOH A 58 858 85 HOH HOH . I 6 HOH A 59 859 18 HOH HOH . I 6 HOH A 60 860 50 HOH HOH . I 6 HOH A 61 861 56 HOH HOH . I 6 HOH A 62 862 10 HOH HOH . I 6 HOH A 63 863 78 HOH HOH . I 6 HOH A 64 864 79 HOH HOH . I 6 HOH A 65 865 87 HOH HOH . I 6 HOH A 66 866 20 HOH HOH . I 6 HOH A 67 867 75 HOH HOH . I 6 HOH A 68 868 69 HOH HOH . I 6 HOH A 69 869 24 HOH HOH . I 6 HOH A 70 870 92 HOH HOH . I 6 HOH A 71 871 64 HOH HOH . I 6 HOH A 72 872 89 HOH HOH . I 6 HOH A 73 873 82 HOH HOH . I 6 HOH A 74 874 41 HOH HOH . I 6 HOH A 75 875 26 HOH HOH . I 6 HOH A 76 876 52 HOH HOH . I 6 HOH A 77 877 81 HOH HOH . I 6 HOH A 78 878 59 HOH HOH . I 6 HOH A 79 879 58 HOH HOH . I 6 HOH A 80 880 53 HOH HOH . I 6 HOH A 81 881 93 HOH HOH . I 6 HOH A 82 882 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA O18 . . . H 5 20.178 11.358 -11.294 1 92.73 ? CA O18 707 A 1 HETATM 2 C CB O18 . . . H 5 20.761 11.925 -10.01 1 93.7 ? CB O18 707 A 1 HETATM 3 C C1 O18 . . . H 5 19.812 13.152 -8.221 1 89.14 ? C1 O18 707 A 1 HETATM 4 C C2 O18 . . . H 5 18.653 13.233 -7.272 1 85.44 ? C2 O18 707 A 1 HETATM 5 C C3 O18 . . . H 5 18.303 11.902 -6.62 1 81.25 ? C3 O18 707 A 1 HETATM 6 C C4 O18 . . . H 5 17.303 12.055 -5.484 1 77.07 ? C4 O18 707 A 1 HETATM 7 C C5 O18 . . . H 5 17.037 10.775 -4.708 1 70.8 ? C5 O18 707 A 1 HETATM 8 C C6 O18 . . . H 5 16.165 10.975 -3.478 1 68.05 ? C6 O18 707 A 1 HETATM 9 C C7 O18 . . . H 5 16.755 11.922 -2.446 1 65.96 ? C7 O18 707 A 1 HETATM 10 C C8 O18 . . . H 5 15.864 12.151 -1.228 1 63.23 ? C8 O18 707 A 1 HETATM 11 C C9 O18 . . . H 5 14.577 12.842 -1.557 1 63.83 ? C9 O18 707 A 1 HETATM 12 C C10 O18 . . . H 5 14.239 14.068 -1.207 1 63.81 ? C10 O18 707 A 1 HETATM 13 C C11 O18 . . . H 5 15.075 15.024 -0.412 1 68.67 ? C11 O18 707 A 1 HETATM 14 C C12 O18 . . . H 5 14.275 16.195 0.157 1 73.19 ? C12 O18 707 A 1 HETATM 15 C C13 O18 . . . H 5 15.128 17.224 0.885 1 75.23 ? C13 O18 707 A 1 HETATM 16 C C14 O18 . . . H 5 14.336 18.366 1.505 1 73.23 ? C14 O18 707 A 1 HETATM 17 C C15 O18 . . . H 5 13.542 19.191 0.511 1 73.6 ? C15 O18 707 A 1 HETATM 18 C C16 O18 . . . H 5 12.842 20.373 1.145 1 72.86 ? C16 O18 707 A 1 HETATM 19 C C O18 . . . H 5 19.778 9.941 -10.887 1 90.6 ? C O18 707 A 1 HETATM 20 N N O18 . . . H 5 19.028 12.122 -11.747 1 91.58 ? N O18 707 A 1 HETATM 21 O OG O18 . . . H 5 19.693 12.116 -9.054 1 92.25 ? OG O18 707 A 1 HETATM 22 O O11 O18 . . . H 5 20.737 13.918 -8.238 1 86.85 ? O11 O18 707 A 1 HETATM 23 O O O18 . . . H 5 20.124 8.976 -11.563 1 90.16 ? O O18 707 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #