data_6XUS # _model_server_result.job_id Nwbm9ZcCXl5FY0nBKEa6oQ _model_server_result.datetime_utc '2025-07-02 21:56:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6XUS # _exptl.entry_id 6XUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.426 _cell.angle_gamma 90 _cell.entry_id 6XUS _cell.length_a 41.12 _cell.length_b 35.14 _cell.length_c 31.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 20.879965 0 24.617837 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' A 5 A A 1005 1_555 A P O2Z 6 A O2Z 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale2 A O3' O2Z 6 A O2Z 1006 1_555 A P U 7 A U 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? metalc ? metalc1 A OP1 U 8 A U 1008 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1213 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1247 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc4 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1296 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc7 B NA NA . A NA 1101 1_555 E O HOH . A HOH 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 C MG MG . A MG 1102 1_555 E O HOH . A HOH 1237 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 C MG MG . A MG 1102 1_555 E O HOH . A HOH 1238 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 C MG MG . A MG 1102 1_555 E O HOH . A HOH 1273 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc11 C MG MG . A MG 1102 1_555 E O HOH . A HOH 1287 2_656 ? A ? ? A ? ? ? ? ? ? ? 2.084 ? metalc ? metalc12 C MG MG . A MG 1102 1_555 E O HOH . A HOH 1294 2_656 ? A ? ? A ? ? ? ? ? ? ? 2.251 ? metalc ? metalc13 D NA NA . A NA 1103 1_555 E O HOH . A HOH 1292 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1001 1_555 A N1 G 12 A G 1012 2_656 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 C 1 A C 1001 1_555 A N1 G 12 A G 1012 2_656 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 C 1 A C 1001 1_555 A O6 G 12 A G 1012 2_656 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 C 1 A C 1001 1_555 A O6 G 12 A G 1012 2_656 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 C 1 A C 1001 1_555 A N2 G 12 A G 1012 2_656 ? A ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 1 A C 1001 1_555 A N2 G 12 A G 1012 2_656 ? B ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 G 2 A G 1002 1_555 A N3 C 11 A C 1011 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 G 2 A G 1002 1_555 A O2 C 11 A C 1011 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 G 2 A G 1002 1_555 A N4 C 11 A C 1011 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 C 3 A C 1003 1_555 A N1 G 10 A G 1010 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 C 3 A C 1003 1_555 A O6 G 10 A G 1010 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 C 3 A C 1003 1_555 A N2 G 10 A G 1010 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog13 A N1 G 4 A G 1004 1_555 A N1 A 9 A A 1009 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog14 A O6 G 4 A G 1004 1_555 A N6 A 9 A A 1009 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 A 5 A A 1005 1_555 A N3 U 8 A U 1008 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 A 5 A A 1005 1_555 A O4 U 8 A U 1008 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 O2Z 6 A O2Z 1006 1_555 A N3 U 7 A U 1007 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 O2Z 6 A O2Z 1006 1_555 A O4 U 7 A U 1007 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 U 7 A U 1007 1_555 A N1 O2Z 6 A O2Z 1006 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 U 7 A U 1007 1_555 A N6 O2Z 6 A O2Z 1006 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 U 8 A U 1008 1_555 A N1 A 5 A A 1005 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 U 8 A U 1008 1_555 A N6 A 5 A A 1005 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog23 A N1 A 9 A A 1009 1_555 A N1 G 4 A G 1004 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog24 A N6 A 9 A A 1009 1_555 A O6 G 4 A G 1004 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 G 10 A G 1010 1_555 A N3 C 3 A C 1003 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 G 10 A G 1010 1_555 A O2 C 3 A C 1003 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 G 10 A G 1010 1_555 A N4 C 3 A C 1003 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 C 11 A C 1011 1_555 A N1 G 2 A G 1002 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N4 C 11 A C 1011 1_555 A O6 G 2 A G 1002 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O2 C 11 A C 1011 1_555 A N2 G 2 A G 1002 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N1 G 12 A G 1012 1_555 A N3 C 1 A C 1001 2_656 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N1 G 12 A G 1012 1_555 A N3 C 1 A C 1001 2_656 ? ? ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N2 G 12 A G 1012 1_555 A O2 C 1 A C 1001 2_656 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N2 G 12 A G 1012 1_555 A O2 C 1 A C 1001 2_656 ? ? ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 G 12 A G 1012 1_555 A N4 C 1 A C 1001 2_656 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O6 G 12 A G 1012 1_555 A N4 C 1 A C 1001 2_656 ? ? ? ? B ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XUS _atom_sites.fract_transf_matrix[1][1] 0.024319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.019994 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1101 6 NA NA1 . C 3 MG A 1 1102 77 MG MG2 . D 2 NA A 1 1103 104 NA NA1 . E 4 HOH A 1 1201 73 HOH HOH . E 4 HOH A 2 1202 109 HOH HOH . E 4 HOH A 3 1203 92 HOH HOH . E 4 HOH A 4 1204 97 HOH HOH . E 4 HOH A 5 1205 96 HOH HOH . E 4 HOH A 6 1206 31 HOH HOH . E 4 HOH A 7 1207 46 HOH HOH . E 4 HOH A 8 1208 41 HOH HOH . E 4 HOH A 9 1209 110 HOH HOH . E 4 HOH A 10 1210 64 HOH HOH . E 4 HOH A 11 1211 88 HOH HOH . E 4 HOH A 12 1212 30 HOH HOH . E 4 HOH A 13 1213 36 HOH HOH . E 4 HOH A 14 1214 102 HOH HOH . E 4 HOH A 15 1215 11 HOH HOH . E 4 HOH A 16 1216 9 HOH HOH . E 4 HOH A 17 1217 42 HOH HOH . E 4 HOH A 18 1218 105 HOH HOH . E 4 HOH A 19 1219 4 HOH HOH . E 4 HOH A 20 1220 26 HOH HOH . E 4 HOH A 21 1221 28 HOH HOH . E 4 HOH A 22 1222 40 HOH HOH . E 4 HOH A 23 1223 2 HOH HOH . E 4 HOH A 24 1224 3 HOH HOH . E 4 HOH A 25 1225 25 HOH HOH . E 4 HOH A 26 1226 82 HOH HOH . E 4 HOH A 27 1227 29 HOH HOH . E 4 HOH A 28 1228 65 HOH HOH . E 4 HOH A 29 1229 19 HOH HOH . E 4 HOH A 30 1230 17 HOH HOH . E 4 HOH A 31 1231 24 HOH HOH . E 4 HOH A 32 1232 50 HOH HOH . E 4 HOH A 33 1233 34 HOH HOH . E 4 HOH A 34 1234 22 HOH HOH . E 4 HOH A 35 1235 7 HOH HOH . E 4 HOH A 36 1236 98 HOH HOH . E 4 HOH A 37 1237 76 HOH HOH . E 4 HOH A 38 1238 89 HOH HOH . E 4 HOH A 39 1239 35 HOH HOH . E 4 HOH A 40 1240 5 HOH HOH . E 4 HOH A 41 1241 1 HOH HOH . E 4 HOH A 42 1242 16 HOH HOH . E 4 HOH A 43 1243 56 HOH HOH . E 4 HOH A 44 1244 38 HOH HOH . E 4 HOH A 45 1245 58 HOH HOH . E 4 HOH A 46 1246 21 HOH HOH . E 4 HOH A 47 1247 18 HOH HOH . E 4 HOH A 48 1248 55 HOH HOH . E 4 HOH A 49 1249 51 HOH HOH . E 4 HOH A 50 1250 112 HOH HOH . E 4 HOH A 51 1251 39 HOH HOH . E 4 HOH A 52 1252 66 HOH HOH . E 4 HOH A 53 1253 10 HOH HOH . E 4 HOH A 54 1254 70 HOH HOH . E 4 HOH A 55 1255 100 HOH HOH . E 4 HOH A 56 1256 48 HOH HOH . E 4 HOH A 57 1257 14 HOH HOH . E 4 HOH A 58 1258 84 HOH HOH . E 4 HOH A 59 1259 13 HOH HOH . E 4 HOH A 60 1260 8 HOH HOH . E 4 HOH A 61 1261 43 HOH HOH . E 4 HOH A 62 1262 57 HOH HOH . E 4 HOH A 63 1263 62 HOH HOH . E 4 HOH A 64 1264 72 HOH HOH . E 4 HOH A 65 1265 15 HOH HOH . E 4 HOH A 66 1266 12 HOH HOH . E 4 HOH A 67 1267 47 HOH HOH . E 4 HOH A 68 1268 86 HOH HOH . E 4 HOH A 69 1269 27 HOH HOH . E 4 HOH A 70 1270 52 HOH HOH . E 4 HOH A 71 1271 95 HOH HOH . E 4 HOH A 72 1272 61 HOH HOH . E 4 HOH A 73 1273 33 HOH HOH . E 4 HOH A 74 1274 20 HOH HOH . E 4 HOH A 75 1275 108 HOH HOH . E 4 HOH A 76 1276 32 HOH HOH . E 4 HOH A 77 1277 94 HOH HOH . E 4 HOH A 78 1278 63 HOH HOH . E 4 HOH A 79 1279 37 HOH HOH . E 4 HOH A 80 1280 23 HOH HOH . E 4 HOH A 81 1281 67 HOH HOH . E 4 HOH A 82 1282 71 HOH HOH . E 4 HOH A 83 1283 45 HOH HOH . E 4 HOH A 84 1284 68 HOH HOH . E 4 HOH A 85 1285 54 HOH HOH . E 4 HOH A 86 1286 60 HOH HOH . E 4 HOH A 87 1287 78 HOH HOH . E 4 HOH A 88 1288 93 HOH HOH . E 4 HOH A 89 1289 114 HOH HOH . E 4 HOH A 90 1290 81 HOH HOH . E 4 HOH A 91 1291 79 HOH HOH . E 4 HOH A 92 1292 69 HOH HOH . E 4 HOH A 93 1293 99 HOH HOH . E 4 HOH A 94 1294 91 HOH HOH . E 4 HOH A 95 1295 53 HOH HOH . E 4 HOH A 96 1296 44 HOH HOH . E 4 HOH A 97 1297 106 HOH HOH . E 4 HOH A 98 1298 107 HOH HOH . E 4 HOH A 99 1299 101 HOH HOH . E 4 HOH A 100 1300 90 HOH HOH . E 4 HOH A 101 1301 113 HOH HOH . E 4 HOH A 102 1302 103 HOH HOH . E 4 HOH A 103 1303 59 HOH HOH . E 4 HOH A 104 1304 85 HOH HOH . E 4 HOH A 105 1305 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.348 _atom_site.Cartn_y 2.392 _atom_site.Cartn_z 17.581 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 14.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #