data_6XV9
#
_model_server_result.job_id            fJOyMKBHhvo2RtpGIE15VA 
_model_server_result.datetime_utc      '2024-11-05 00:22:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6XV9 
#
_exptl.entry_id    6XV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.562 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[3-[(dimethylamino)methyl]-5-methyl-phenyl]-2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XV9 
_cell.length_a            89.632 
_cell.length_b            90.614 
_cell.length_c            87.042 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H30 N4 O4' 
_chem_comp.formula_weight    486.562 
_chem_comp.id                O35 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[3-[(dimethylamino)methyl]-5-methyl-phenyl]-2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 N3 O35 sing 235 n n 
C27 N3 O35 sing 236 n n 
N3 C25 O35 sing 237 n n 
C25 C3 O35 sing 238 n n 
C3 C4 O35 doub 239 n y 
C3 C2 O35 sing 240 n y 
C4 C5 O35 sing 241 n y 
C2 C1 O35 doub 242 n y 
C5 C6 O35 doub 243 n y 
C5 N O35 sing 244 n n 
C1 C6 O35 sing 245 n y 
C1 C O35 sing 246 n n 
N C7 O35 sing 247 n n 
C7 O O35 doub 248 n n 
C7 C8 O35 sing 249 n n 
C8 C9 O35 sing 250 n n 
N1 C9 O35 doub 251 n y 
N1 C13 O35 sing 252 n y 
C9 C10 O35 sing 253 n y 
C13 C12 O35 doub 254 n y 
C10 O3 O35 sing 255 n n 
C10 C11 O35 doub 256 n y 
C12 C11 O35 sing 257 n y 
C12 O1 O35 sing 258 n n 
O3 C24 O35 sing 259 n n 
O1 C14 O35 sing 260 n n 
C14 C15 O35 doub 261 n y 
C14 C18 O35 sing 262 n y 
C19 C18 O35 doub 263 n y 
C19 C20 O35 sing 264 n y 
C15 C16 O35 sing 265 n y 
C18 C17 O35 sing 266 n y 
C20 C21 O35 doub 267 n y 
C16 N2 O35 doub 268 n y 
C17 N2 O35 sing 269 n y 
C17 C22 O35 doub 270 n y 
C21 O2 O35 sing 271 n n 
C21 C22 O35 sing 272 n y 
O2 C23 O35 sing 273 n n 
C2 H1 O35 sing 274 n n 
C8 H2 O35 sing 275 n n 
C8 H3 O35 sing 276 n n 
C11 H4 O35 sing 277 n n 
C13 H5 O35 sing 278 n n 
C15 H6 O35 sing 279 n n 
C16 H7 O35 sing 280 n n 
C19 H8 O35 sing 281 n n 
C20 H9 O35 sing 282 n n 
C22 H10 O35 sing 283 n n 
C24 H11 O35 sing 284 n n 
C24 H12 O35 sing 285 n n 
C24 H13 O35 sing 286 n n 
C27 H14 O35 sing 287 n n 
C27 H15 O35 sing 288 n n 
C27 H16 O35 sing 289 n n 
N H17 O35 sing 290 n n 
C4 H18 O35 sing 291 n n 
C25 H19 O35 sing 292 n n 
C25 H20 O35 sing 293 n n 
C26 H22 O35 sing 294 n n 
C26 H23 O35 sing 295 n n 
C26 H24 O35 sing 296 n n 
C6 H25 O35 sing 297 n n 
C H26 O35 sing 298 n n 
C H27 O35 sing 299 n n 
C H28 O35 sing 300 n n 
C23 H29 O35 sing 301 n n 
C23 H30 O35 sing 302 n n 
C23 H31 O35 sing 303 n n 
#
_atom_sites.entry_id                     6XV9 
_atom_sites.fract_transf_matrix[1][1]    0.011157 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 O35 A 1 1001 1 O35 INH . 
D 2 O35 B 1 1001 2 O35 INH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 O35 . . . D 2 187.867 18.104 108.451 1 63.81 ? C1 O35 1001 B 1 
HETATM 2 C C2 O35 . . . D 2 188.005 18.346 109.814 1 63.29 ? C2 O35 1001 B 1 
HETATM 3 C C3 O35 . . . D 2 188.43 19.578 110.296 1 66.63 ? C3 O35 1001 B 1 
HETATM 4 C C7 O35 . . . D 2 188.886 21.464 105.789 1 71.9 ? C7 O35 1001 B 1 
HETATM 5 C C8 O35 . . . D 2 189.698 22.507 105.04 1 71.08 ? C8 O35 1001 B 1 
HETATM 6 C C9 O35 . . . D 2 189.104 22.798 103.678 1 73.33 ? C9 O35 1001 B 1 
HETATM 7 C C10 O35 . . . D 2 189.742 22.73 102.428 1 75.61 ? C10 O35 1001 B 1 
HETATM 8 C C11 O35 . . . D 2 188.974 22.859 101.279 1 75.94 ? C11 O35 1001 B 1 
HETATM 9 C C12 O35 . . . D 2 187.604 23.06 101.38 1 74.04 ? C12 O35 1001 B 1 
HETATM 10 C C13 O35 . . . D 2 187.05 23.118 102.651 1 73.13 ? C13 O35 1001 B 1 
HETATM 11 C C14 O35 . . . D 2 186.994 22.359 99.14 1 74.02 ? C14 O35 1001 B 1 
HETATM 12 C C15 O35 . . . D 2 187.569 21.117 99.255 1 77.49 ? C15 O35 1001 B 1 
HETATM 13 C C16 O35 . . . D 2 187.606 20.311 98.129 1 80.42 ? C16 O35 1001 B 1 
HETATM 14 C C19 O35 . . . D 2 185.618 23.926 97.77 1 69.51 ? C19 O35 1001 B 1 
HETATM 15 C C20 O35 . . . D 2 184.893 24.129 96.637 1 70.62 ? C20 O35 1001 B 1 
HETATM 16 C C21 O35 . . . D 2 184.97 23.223 95.581 1 73.45 ? C21 O35 1001 B 1 
HETATM 17 C C22 O35 . . . D 2 185.773 22.11 95.648 1 75.42 ? C22 O35 1001 B 1 
HETATM 18 C C24 O35 . . . D 2 191.727 22.463 101.103 1 68.99 ? C24 O35 1001 B 1 
HETATM 19 C C27 O35 . . . D 2 186.305 19.388 112.696 1 63.28 ? C27 O35 1001 B 1 
HETATM 20 O O O35 . . . D 2 188.069 20.764 105.204 1 72.05 ? O O35 1001 B 1 
HETATM 21 N N O35 . . . D 2 189.045 21.419 107.133 1 71.84 ? N O35 1001 B 1 
HETATM 22 C C5 O35 . . . D 2 188.633 20.379 108.018 1 70.85 ? C5 O35 1001 B 1 
HETATM 23 C C4 O35 . . . D 2 188.755 20.584 109.388 1 71.19 ? C4 O35 1001 B 1 
HETATM 24 C C25 O35 . . . D 2 188.456 19.845 111.78 1 64.44 ? C25 O35 1001 B 1 
HETATM 25 N N3 O35 . . . D 2 187.175 20.419 112.168 1 62.58 ? N3 O35 1001 B 1 
HETATM 26 C C26 O35 . . . D 2 187.346 21.482 113.157 1 60.94 ? C26 O35 1001 B 1 
HETATM 27 C C6 O35 . . . D 2 188.193 19.13 107.56 1 67.29 ? C6 O35 1001 B 1 
HETATM 28 C C O35 . . . D 2 187.28 16.807 107.956 1 61.27 ? C O35 1001 B 1 
HETATM 29 N N1 O35 . . . D 2 187.779 23.011 103.772 1 72.32 ? N1 O35 1001 B 1 
HETATM 30 O O3 O35 . . . D 2 191.098 22.521 102.387 1 73.37 ? O3 O35 1001 B 1 
HETATM 31 O O1 O35 . . . D 2 186.854 23.263 100.207 1 73.11 ? O1 O35 1001 B 1 
HETATM 32 C C18 O35 . . . D 2 186.456 22.794 97.897 1 72.27 ? C18 O35 1001 B 1 
HETATM 33 O O2 O35 . . . D 2 184.201 23.531 94.489 1 73.46 ? O2 O35 1001 B 1 
HETATM 34 C C23 O35 . . . D 2 184.223 22.641 93.372 1 72.03 ? C23 O35 1001 B 1 
HETATM 35 C C17 O35 . . . D 2 186.518 21.863 96.822 1 75.72 ? C17 O35 1001 B 1 
HETATM 36 N N2 O35 . . . D 2 187.125 20.64 96.941 1 79.31 ? N2 O35 1001 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#