data_6XVA # _model_server_result.job_id BQ3HTrgaR81veUDJmjdSdQ _model_server_result.datetime_utc '2025-02-05 17:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 6XVA # _exptl.entry_id 6XVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.572 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[3-[2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanoylamino]-5-methyl-phenyl]methyl]propanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XVA _cell.length_a 88.135 _cell.length_b 90.045 _cell.length_c 90.745 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H30 N4 O5' _chem_comp.formula_weight 514.572 _chem_comp.id O2K _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[3-[2-[3-methoxy-5-(7-methoxyquinolin-4-yl)oxy-pyridin-2-yl]ethanoylamino]-5-methyl-phenyl]methyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 O2K sing 237 n n C O O2K sing 238 n n C13 C15 O2K doub 239 n y C13 C12 O2K sing 240 n y O C1 O2K sing 241 n n C15 C16 O2K sing 242 n y C28 C1 O2K doub 243 n y C28 C27 O2K sing 244 n y N3 C27 O2K doub 245 n y N3 C26 O2K sing 246 n y C12 C11 O2K doub 247 n y C1 C2 O2K sing 248 n y C27 C4 O2K sing 249 n y C26 C25 O2K doub 250 n y C2 C3 O2K doub 251 n y C4 C3 O2K sing 252 n y C4 C5 O2K doub 253 n y O2 C10 O2K doub 254 n n C25 C5 O2K sing 255 n y C16 C17 O2K sing 256 n n C16 C21 O2K doub 257 n y C5 O1 O2K sing 258 n n C11 C21 O2K sing 259 n y C11 N1 O2K sing 260 n n C17 N2 O2K sing 261 n n C7 N O2K doub 262 n y C7 C6 O2K sing 263 n y O1 C6 O2K sing 264 n n C10 N1 O2K sing 265 n n C10 C9 O2K sing 266 n n N C8 O2K sing 267 n y C6 C24 O2K doub 268 n y C8 C9 O2K sing 269 n n C8 C22 O2K doub 270 n y N2 C18 O2K sing 271 n n C24 C22 O2K sing 272 n y C22 O4 O2K sing 273 n n C18 O3 O2K doub 274 n n C18 C19 O2K sing 275 n n O4 C23 O2K sing 276 n n C20 C19 O2K sing 277 n n C2 H1 O2K sing 278 n n C3 H2 O2K sing 279 n n C7 H3 O2K sing 280 n n C9 H4 O2K sing 281 n n C9 H5 O2K sing 282 n n C12 H6 O2K sing 283 n n C14 H7 O2K sing 284 n n C14 H8 O2K sing 285 n n C14 H9 O2K sing 286 n n C15 H10 O2K sing 287 n n C19 H11 O2K sing 288 n n C19 H12 O2K sing 289 n n C20 H13 O2K sing 290 n n C20 H14 O2K sing 291 n n C20 H15 O2K sing 292 n n C21 H16 O2K sing 293 n n C24 H17 O2K sing 294 n n N2 H18 O2K sing 295 n n C17 H19 O2K sing 296 n n C17 H20 O2K sing 297 n n N1 H21 O2K sing 298 n n C23 H22 O2K sing 299 n n C23 H23 O2K sing 300 n n C23 H24 O2K sing 301 n n C25 H25 O2K sing 302 n n C26 H26 O2K sing 303 n n C28 H27 O2K sing 304 n n C H28 O2K sing 305 n n C H29 O2K sing 306 n n C H30 O2K sing 307 n n # _atom_sites.entry_id 6XVA _atom_sites.fract_transf_matrix[1][1] 0.011346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O2K A 1 1001 1 O2K INH . D 2 O2K B 1 1001 2 O2K INH . E 3 HOH A 1 1101 8 HOH HOH . E 3 HOH A 2 1102 58 HOH HOH . E 3 HOH A 3 1103 38 HOH HOH . E 3 HOH A 4 1104 76 HOH HOH . E 3 HOH A 5 1105 51 HOH HOH . E 3 HOH A 6 1106 65 HOH HOH . E 3 HOH A 7 1107 72 HOH HOH . E 3 HOH A 8 1108 52 HOH HOH . E 3 HOH A 9 1109 68 HOH HOH . E 3 HOH A 10 1110 9 HOH HOH . E 3 HOH A 11 1111 48 HOH HOH . E 3 HOH A 12 1112 17 HOH HOH . E 3 HOH A 13 1113 71 HOH HOH . E 3 HOH A 14 1114 16 HOH HOH . E 3 HOH A 15 1115 75 HOH HOH . E 3 HOH A 16 1116 59 HOH HOH . E 3 HOH A 17 1117 53 HOH HOH . E 3 HOH A 18 1118 28 HOH HOH . E 3 HOH A 19 1119 13 HOH HOH . E 3 HOH A 20 1120 25 HOH HOH . E 3 HOH A 21 1121 5 HOH HOH . E 3 HOH A 22 1122 61 HOH HOH . E 3 HOH A 23 1123 21 HOH HOH . E 3 HOH A 24 1124 4 HOH HOH . E 3 HOH A 25 1125 74 HOH HOH . E 3 HOH A 26 1126 11 HOH HOH . E 3 HOH A 27 1127 24 HOH HOH . E 3 HOH A 28 1128 6 HOH HOH . E 3 HOH A 29 1129 60 HOH HOH . E 3 HOH A 30 1130 36 HOH HOH . E 3 HOH A 31 1131 30 HOH HOH . E 3 HOH A 32 1132 47 HOH HOH . E 3 HOH A 33 1133 44 HOH HOH . E 3 HOH A 34 1134 10 HOH HOH . E 3 HOH A 35 1135 23 HOH HOH . E 3 HOH A 36 1136 22 HOH HOH . E 3 HOH A 37 1137 19 HOH HOH . E 3 HOH A 38 1138 32 HOH HOH . E 3 HOH A 39 1139 31 HOH HOH . E 3 HOH A 40 1140 42 HOH HOH . E 3 HOH A 41 1141 12 HOH HOH . E 3 HOH A 42 1142 27 HOH HOH . E 3 HOH A 43 1143 1 HOH HOH . E 3 HOH A 44 1144 45 HOH HOH . E 3 HOH A 45 1145 20 HOH HOH . E 3 HOH A 46 1146 55 HOH HOH . E 3 HOH A 47 1147 64 HOH HOH . E 3 HOH A 48 1148 73 HOH HOH . E 3 HOH A 49 1149 37 HOH HOH . E 3 HOH A 50 1150 35 HOH HOH . F 3 HOH B 1 1101 29 HOH HOH . F 3 HOH B 2 1102 7 HOH HOH . F 3 HOH B 3 1103 62 HOH HOH . F 3 HOH B 4 1104 54 HOH HOH . F 3 HOH B 5 1105 14 HOH HOH . F 3 HOH B 6 1106 66 HOH HOH . F 3 HOH B 7 1107 15 HOH HOH . F 3 HOH B 8 1108 18 HOH HOH . F 3 HOH B 9 1109 69 HOH HOH . F 3 HOH B 10 1110 26 HOH HOH . F 3 HOH B 11 1111 50 HOH HOH . F 3 HOH B 12 1112 43 HOH HOH . F 3 HOH B 13 1113 33 HOH HOH . F 3 HOH B 14 1114 63 HOH HOH . F 3 HOH B 15 1115 57 HOH HOH . F 3 HOH B 16 1116 41 HOH HOH . F 3 HOH B 17 1117 46 HOH HOH . F 3 HOH B 18 1118 39 HOH HOH . F 3 HOH B 19 1119 56 HOH HOH . F 3 HOH B 20 1120 3 HOH HOH . F 3 HOH B 21 1121 70 HOH HOH . F 3 HOH B 22 1122 67 HOH HOH . F 3 HOH B 23 1123 34 HOH HOH . F 3 HOH B 24 1124 2 HOH HOH . F 3 HOH B 25 1125 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 O2K . . . D 2 8.216 39.778 22.086 1 41.74 ? C1 O2K 1001 B 1 HETATM 2 C C2 O2K . . . D 2 9.276 39.754 21.179 1 40.74 ? C2 O2K 1001 B 1 HETATM 3 C C3 O2K . . . D 2 10.416 39.061 21.469 1 40.11 ? C3 O2K 1001 B 1 HETATM 4 O O4 O2K . . . D 2 15.082 33.422 23.215 1 45.83 ? O4 O2K 1001 B 1 HETATM 5 C C7 O2K . . . D 2 15.132 37.467 22.503 1 39.14 ? C7 O2K 1001 B 1 HETATM 6 C C8 O2K . . . D 2 16.228 35.497 23 1 45.37 ? C8 O2K 1001 B 1 HETATM 7 C C9 O2K . . . D 2 17.553 34.837 23.297 1 47.92 ? C9 O2K 1001 B 1 HETATM 8 C C10 O2K . . . D 2 18.281 35.529 24.433 1 51.08 ? C10 O2K 1001 B 1 HETATM 9 C C11 O2K . . . D 2 20.586 35.848 25.341 1 58.79 ? C11 O2K 1001 B 1 HETATM 10 C C12 O2K . . . D 2 20.252 36.632 26.446 1 58.73 ? C12 O2K 1001 B 1 HETATM 11 C C13 O2K . . . D 2 21.236 37.222 27.233 1 59.24 ? C13 O2K 1001 B 1 HETATM 12 C C14 O2K . . . D 2 20.868 38.069 28.425 1 58.76 ? C14 O2K 1001 B 1 HETATM 13 C C15 O2K . . . D 2 22.568 37.011 26.894 1 60.86 ? C15 O2K 1001 B 1 HETATM 14 C C16 O2K . . . D 2 22.93 36.232 25.797 1 65.44 ? C16 O2K 1001 B 1 HETATM 15 C C19 O2K . . . D 2 25.419 34.563 22.129 1 72.06 ? C19 O2K 1001 B 1 HETATM 16 C C20 O2K . . . D 2 25.944 33.436 21.707 1 71 ? C20 O2K 1001 B 1 HETATM 17 C C21 O2K . . . D 2 21.927 35.653 25.026 1 62.17 ? C21 O2K 1001 B 1 HETATM 18 C C22 O2K . . . D 2 15.03 34.768 22.97 1 44.5 ? C22 O2K 1001 B 1 HETATM 19 C C24 O2K . . . D 2 13.86 35.459 22.689 1 41.17 ? C24 O2K 1001 B 1 HETATM 20 C C27 O2K . . . D 2 9.463 38.382 23.61 1 42.37 ? C27 O2K 1001 B 1 HETATM 21 O O3 O2K . . . D 2 25.501 33.698 24.369 1 74.99 ? O3 O2K 1001 B 1 HETATM 22 C C18 O2K . . . D 2 25.205 34.633 23.604 1 73.8 ? C18 O2K 1001 B 1 HETATM 23 N N2 O2K . . . D 2 24.669 35.776 24.051 1 72.66 ? N2 O2K 1001 B 1 HETATM 24 C C17 O2K . . . D 2 24.389 36.024 25.46 1 70.08 ? C17 O2K 1001 B 1 HETATM 25 N N1 O2K . . . D 2 19.602 35.235 24.523 1 55.28 ? N1 O2K 1001 B 1 HETATM 26 O O2 O2K . . . D 2 17.7 36.29 25.199 1 49.62 ? O2 O2K 1001 B 1 HETATM 27 N N O2K . . . D 2 16.273 36.821 22.771 1 42.73 ? N O2K 1001 B 1 HETATM 28 C C23 O2K . . . D 2 13.848 32.702 23.226 1 45.64 ? C23 O2K 1001 B 1 HETATM 29 C C6 O2K . . . D 2 13.912 36.827 22.456 1 37.66 ? C6 O2K 1001 B 1 HETATM 30 O O1 O2K . . . D 2 12.765 37.58 22.166 1 36.54 ? O1 O2K 1001 B 1 HETATM 31 C C5 O2K . . . D 2 11.698 37.607 23.08 1 35.72 ? C5 O2K 1001 B 1 HETATM 32 C C25 O2K . . . D 2 11.728 36.956 24.296 1 35.8 ? C25 O2K 1001 B 1 HETATM 33 C C26 O2K . . . D 2 10.612 37.053 25.111 1 42.54 ? C26 O2K 1001 B 1 HETATM 34 N N3 O2K . . . D 2 9.507 37.727 24.817 1 46.38 ? N3 O2K 1001 B 1 HETATM 35 C C4 O2K . . . D 2 10.546 38.354 22.695 1 39.38 ? C4 O2K 1001 B 1 HETATM 36 C C28 O2K . . . D 2 8.29 39.107 23.288 1 41.43 ? C28 O2K 1001 B 1 HETATM 37 O O O2K . . . D 2 7.128 40.51 21.675 1 36.58 ? O O2K 1001 B 1 HETATM 38 C C O2K . . . D 2 5.998 40.579 22.549 1 32.63 ? C O2K 1001 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #