data_6XVF
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_model_server_result.job_id            2b0ohM9ap8wFeqyRSz-Lnw 
_model_server_result.datetime_utc      '2024-11-05 04:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xvf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":103}' 
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_entry.id    6XVF 
#
_exptl.entry_id    6XVF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XVF 
_cell.length_a            209.869 
_cell.length_b            209.869 
_cell.length_c            342.418 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6XVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 M N N 
? 13 O N N 
? 13 X N N 
? 13 Z N N 
? 13 DA N N 
? 13 GA N N 
? 13 HA N N 
? 13 IA N N 
? 13 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 1037 n n 
P O2 PO4 sing 1038 n n 
P O3 PO4 sing 1039 n n 
P O4 PO4 sing 1040 n n 
#
_atom_sites.entry_id                     6XVF 
_atom_sites.fract_transf_matrix[1][1]    0.004765 
_atom_sites.fract_transf_matrix[1][2]    0.002751 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 PO4 A 1 503 503 PO4 PO4 . 
N 14 CDL A 1 504 401 CDL CDL . 
O 13 PO4 B 1 501 501 PO4 PO4 . 
P 15 HEM C 1 401 402 HEM HEM . 
Q 15 HEM C 1 402 403 HEM HEM . 
R 16 LMT C 1 403 405 LMT LMT . 
S 11 PG4 C 1 404 406 PG4 PG4 . 
T 11 PG4 C 1 405 407 PG4 PG4 . 
U 14 CDL C 1 406 408 CDL CDL . 
V 17 PEE C 1 407 409 PEE PEE . 
W 18 JAG C 1 408 404 JAG JAG . 
X 13 PO4 C 1 409 410 PO4 PO4 . 
Y 19 HEC D 1 501 501 HEC HEC . 
Z 13 PO4 D 1 502 502 PO4 PO4 . 
AA 14 CDL D 1 503 503 CDL CDL . 
BA 20 FES E 1 201 201 FES FES . 
CA 21 PX4 E 1 202 202 PX4 PX4 . 
DA 13 PO4 E 1 203 203 PO4 PO4 . 
EA 17 PEE E 1 204 204 PEE PEE . 
FA 14 CDL E 1 205 205 CDL CDL . 
GA 13 PO4 F 1 501 501 PO4 PO4 . 
HA 13 PO4 G 1 101 101 PO4 PO4 . 
IA 13 PO4 G 1 102 102 PO4 PO4 . 
JA 13 PO4 G 1 103 103 PO4 PO4 . 
KA 22 HOH A 1 601 504 HOH HOH . 
KA 22 HOH A 2 602 508 HOH HOH . 
KA 22 HOH A 3 603 507 HOH HOH . 
KA 22 HOH A 4 604 505 HOH HOH . 
KA 22 HOH A 5 605 509 HOH HOH . 
KA 22 HOH A 6 606 506 HOH HOH . 
LA 22 HOH B 1 601 502 HOH HOH . 
LA 22 HOH B 2 602 503 HOH HOH . 
MA 22 HOH C 1 501 412 HOH HOH . 
MA 22 HOH C 2 502 414 HOH HOH . 
MA 22 HOH C 3 503 411 HOH HOH . 
MA 22 HOH C 4 504 413 HOH HOH . 
NA 22 HOH D 1 601 505 HOH HOH . 
NA 22 HOH D 2 602 504 HOH HOH . 
OA 22 HOH F 1 601 502 HOH HOH . 
PA 22 HOH G 1 201 104 HOH HOH . 
QA 22 HOH I 1 101 101 HOH HOH . 
QA 22 HOH I 2 102 102 HOH HOH . 
RA 22 HOH J 1 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . JA 13 -58.96 -42.437 54.531 1 224.8 ? P PO4 103 G 1 
HETATM 2 O O1 PO4 . . . JA 13 -57.828 -42.753 53.586 1 224.32 ? O1 PO4 103 G 1 
HETATM 3 O O2 PO4 . . . JA 13 -58.643 -41.181 55.312 1 231.55 ? O2 PO4 103 G 1 
HETATM 4 O O3 PO4 . . . JA 13 -60.215 -42.114 53.762 1 223.18 ? O3 PO4 103 G 1 
HETATM 5 O O4 PO4 . . . JA 13 -59.154 -43.635 55.437 1 223.06 ? O4 PO4 103 G 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
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