data_6XVF
#
_model_server_result.job_id            G6aS8BXyKXhye1lvJ3itng 
_model_server_result.datetime_utc      '2024-11-05 04:57:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":204}' 
#
_entry.id    6XVF 
#
_exptl.entry_id    6XVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          17 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XVF 
_cell.length_a            209.869 
_cell.length_b            209.869 
_cell.length_c            342.418 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 17 V N N 
? 17 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 856 n n 
C5 C4 PEE sing 857 n n 
C4 O4P PEE sing 858 n n 
O4P P PEE sing 859 n n 
O1P P PEE doub 860 n n 
C1 O3P PEE sing 861 n n 
C1 C2 PEE sing 862 n n 
O3P P PEE sing 863 n n 
P O2P PEE sing 864 n n 
C2 C3 PEE sing 865 n n 
C2 O2 PEE sing 866 n n 
C3 O3 PEE sing 867 n n 
O2 C10 PEE sing 868 n n 
C31 C30 PEE sing 869 n n 
C31 C32 PEE sing 870 n n 
C33 C32 PEE sing 871 n n 
C33 C34 PEE sing 872 n n 
C30 O3 PEE sing 873 n n 
C30 O5 PEE doub 874 n n 
C10 O4 PEE doub 875 n n 
C10 C11 PEE sing 876 n n 
C34 C35 PEE sing 877 n n 
C11 C12 PEE sing 878 n n 
C35 C36 PEE sing 879 n n 
C36 C37 PEE sing 880 n n 
C37 C38 PEE sing 881 n n 
C38 C39 PEE doub 882 z n 
C12 C13 PEE sing 883 n n 
C39 C40 PEE sing 884 n n 
C13 C14 PEE sing 885 n n 
C14 C15 PEE sing 886 n n 
C40 C41 PEE sing 887 n n 
C15 C16 PEE sing 888 n n 
C41 C42 PEE sing 889 n n 
C16 C17 PEE sing 890 n n 
C42 C43 PEE sing 891 n n 
C17 C18 PEE sing 892 n n 
C43 C44 PEE sing 893 n n 
C18 C19 PEE doub 894 z n 
C46 C47 PEE sing 895 n n 
C46 C45 PEE sing 896 n n 
C44 C45 PEE sing 897 n n 
C19 C20 PEE sing 898 n n 
C20 C21 PEE sing 899 n n 
C21 C22 PEE sing 900 n n 
C22 C23 PEE sing 901 n n 
C23 C24 PEE sing 902 n n 
C24 C25 PEE sing 903 n n 
C26 C25 PEE sing 904 n n 
C26 C27 PEE sing 905 n n 
C27 H7 PEE sing 906 n n 
C27 H8 PEE sing 907 n n 
C27 H82 PEE sing 908 n n 
C26 H5 PEE sing 909 n n 
C26 H6 PEE sing 910 n n 
C25 H12 PEE sing 911 n n 
C25 H4 PEE sing 912 n n 
C24 H10 PEE sing 913 n n 
C24 H11 PEE sing 914 n n 
C23 H83 PEE sing 915 n n 
C23 H9 PEE sing 916 n n 
C22 H2 PEE sing 917 n n 
C22 H3 PEE sing 918 n n 
C21 H14 PEE sing 919 n n 
C21 H1 PEE sing 920 n n 
C20 H16 PEE sing 921 n n 
C20 H13 PEE sing 922 n n 
C19 H18 PEE sing 923 n n 
C18 H20 PEE sing 924 n n 
C17 H22 PEE sing 925 n n 
C17 H19 PEE sing 926 n n 
C16 H21 PEE sing 927 n n 
C16 H28 PEE sing 928 n n 
C15 H23 PEE sing 929 n n 
C15 H24 PEE sing 930 n n 
C14 H25 PEE sing 931 n n 
C14 H26 PEE sing 932 n n 
C13 H17 PEE sing 933 n n 
C13 H27 PEE sing 934 n n 
C12 H15 PEE sing 935 n n 
C12 H29 PEE sing 936 n n 
C11 H30 PEE sing 937 n n 
C11 H31 PEE sing 938 n n 
C2 H32 PEE sing 939 n n 
C1 H33 PEE sing 940 n n 
C1 H34 PEE sing 941 n n 
O2P H35 PEE sing 942 n n 
C4 H36 PEE sing 943 n n 
C4 H37 PEE sing 944 n n 
C5 H38 PEE sing 945 n n 
C5 H39 PEE sing 946 n n 
N H40 PEE sing 947 n n 
N H41 PEE sing 948 n n 
C3 H43 PEE sing 949 n n 
C3 H44 PEE sing 950 n n 
C31 H45 PEE sing 951 n n 
C31 H46 PEE sing 952 n n 
C32 H47 PEE sing 953 n n 
C32 H48 PEE sing 954 n n 
C33 H49 PEE sing 955 n n 
C33 H50 PEE sing 956 n n 
C34 H51 PEE sing 957 n n 
C34 H52 PEE sing 958 n n 
C35 H53 PEE sing 959 n n 
C35 H54 PEE sing 960 n n 
C36 H55 PEE sing 961 n n 
C36 H56 PEE sing 962 n n 
C37 H57 PEE sing 963 n n 
C37 H58 PEE sing 964 n n 
C38 H59 PEE sing 965 n n 
C39 H60 PEE sing 966 n n 
C40 H81 PEE sing 967 n n 
C40 H61 PEE sing 968 n n 
C41 H80 PEE sing 969 n n 
C41 H62 PEE sing 970 n n 
C42 H63 PEE sing 971 n n 
C42 H64 PEE sing 972 n n 
C43 H65 PEE sing 973 n n 
C43 H66 PEE sing 974 n n 
C44 H67 PEE sing 975 n n 
C44 H68 PEE sing 976 n n 
C45 H69 PEE sing 977 n n 
C45 H70 PEE sing 978 n n 
C46 H71 PEE sing 979 n n 
C46 H72 PEE sing 980 n n 
C47 H73 PEE sing 981 n n 
C47 H74 PEE sing 982 n n 
C47 H75 PEE sing 983 n n 
#
_atom_sites.entry_id                     6XVF 
_atom_sites.fract_transf_matrix[1][1]    0.004765 
_atom_sites.fract_transf_matrix[1][2]    0.002751 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 PO4 A 1 503 503 PO4 PO4 . 
N 14 CDL A 1 504 401 CDL CDL . 
O 13 PO4 B 1 501 501 PO4 PO4 . 
P 15 HEM C 1 401 402 HEM HEM . 
Q 15 HEM C 1 402 403 HEM HEM . 
R 16 LMT C 1 403 405 LMT LMT . 
S 11 PG4 C 1 404 406 PG4 PG4 . 
T 11 PG4 C 1 405 407 PG4 PG4 . 
U 14 CDL C 1 406 408 CDL CDL . 
V 17 PEE C 1 407 409 PEE PEE . 
W 18 JAG C 1 408 404 JAG JAG . 
X 13 PO4 C 1 409 410 PO4 PO4 . 
Y 19 HEC D 1 501 501 HEC HEC . 
Z 13 PO4 D 1 502 502 PO4 PO4 . 
AA 14 CDL D 1 503 503 CDL CDL . 
BA 20 FES E 1 201 201 FES FES . 
CA 21 PX4 E 1 202 202 PX4 PX4 . 
DA 13 PO4 E 1 203 203 PO4 PO4 . 
EA 17 PEE E 1 204 204 PEE PEE . 
FA 14 CDL E 1 205 205 CDL CDL . 
GA 13 PO4 F 1 501 501 PO4 PO4 . 
HA 13 PO4 G 1 101 101 PO4 PO4 . 
IA 13 PO4 G 1 102 102 PO4 PO4 . 
JA 13 PO4 G 1 103 103 PO4 PO4 . 
KA 22 HOH A 1 601 504 HOH HOH . 
KA 22 HOH A 2 602 508 HOH HOH . 
KA 22 HOH A 3 603 507 HOH HOH . 
KA 22 HOH A 4 604 505 HOH HOH . 
KA 22 HOH A 5 605 509 HOH HOH . 
KA 22 HOH A 6 606 506 HOH HOH . 
LA 22 HOH B 1 601 502 HOH HOH . 
LA 22 HOH B 2 602 503 HOH HOH . 
MA 22 HOH C 1 501 412 HOH HOH . 
MA 22 HOH C 2 502 414 HOH HOH . 
MA 22 HOH C 3 503 411 HOH HOH . 
MA 22 HOH C 4 504 413 HOH HOH . 
NA 22 HOH D 1 601 505 HOH HOH . 
NA 22 HOH D 2 602 504 HOH HOH . 
OA 22 HOH F 1 601 502 HOH HOH . 
PA 22 HOH G 1 201 104 HOH HOH . 
QA 22 HOH I 1 101 101 HOH HOH . 
QA 22 HOH I 2 102 102 HOH HOH . 
RA 22 HOH J 1 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 PEE . . . EA 17 -58.336 -65.524 16.729 1 96.2 ? C15 PEE 204 E 1 
HETATM 2 C C13 PEE . . . EA 17 -47.566 -62.04 19.582 1 149.22 ? C13 PEE 204 E 1 
HETATM 3 C C12 PEE . . . EA 17 -46.295 -62.087 18.736 1 149.96 ? C12 PEE 204 E 1 
HETATM 4 C C11 PEE . . . EA 17 -46.48 -63.129 17.647 1 149.51 ? C11 PEE 204 E 1 
HETATM 5 C C10 PEE . . . EA 17 -45.181 -63.654 17.094 1 151.88 ? C10 PEE 204 E 1 
HETATM 6 O O4 PEE . . . EA 17 -45.071 -63.725 15.889 1 151.12 ? O4 PEE 204 E 1 
HETATM 7 O O2 PEE . . . EA 17 -44.093 -64.12 17.964 1 156.51 ? O2 PEE 204 E 1 
HETATM 8 C C2 PEE . . . EA 17 -43.338 -65.323 17.629 1 159.26 ? C2 PEE 204 E 1 
HETATM 9 C C1 PEE . . . EA 17 -42.281 -65.082 16.528 1 161.28 ? C1 PEE 204 E 1 
HETATM 10 O O3P PEE . . . EA 17 -42.238 -66.033 15.45 1 161.09 ? O3P PEE 204 E 1 
HETATM 11 P P PEE . . . EA 17 -40.817 -66.523 14.848 1 163.3 ? P PEE 204 E 1 
HETATM 12 O O2P PEE . . . EA 17 -40.133 -67.344 15.912 1 164.74 ? O2P PEE 204 E 1 
HETATM 13 O O1P PEE . . . EA 17 -40.083 -65.35 14.254 1 164.08 ? O1P PEE 204 E 1 
HETATM 14 O O4P PEE . . . EA 17 -41.13 -67.558 13.651 1 161.88 ? O4P PEE 204 E 1 
HETATM 15 C C4 PEE . . . EA 17 -42.151 -67.388 12.673 1 159.25 ? C4 PEE 204 E 1 
HETATM 16 C C5 PEE . . . EA 17 -41.668 -66.5 11.534 1 159.61 ? C5 PEE 204 E 1 
HETATM 17 N N PEE . . . EA 17 -42.78 -65.597 11.135 1 158.03 ? N PEE 204 E 1 
HETATM 18 C C3 PEE . . . EA 17 -44.212 -66.543 17.324 1 158.83 ? C3 PEE 204 E 1 
HETATM 19 O O3 PEE . . . EA 17 -45.467 -66.464 17.995 1 162.36 ? O3 PEE 204 E 1 
HETATM 20 C C30 PEE . . . EA 17 -45.616 -66.752 19.417 1 165.23 ? C30 PEE 204 E 1 
HETATM 21 O O5 PEE . . . EA 17 -45.345 -67.882 19.812 1 168.56 ? O5 PEE 204 E 1 
HETATM 22 C C31 PEE . . . EA 17 -46.087 -65.651 20.356 1 166.18 ? C31 PEE 204 E 1 
HETATM 23 C C32 PEE . . . EA 17 -47.442 -65.917 21.031 1 162.56 ? C32 PEE 204 E 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#