data_6XVF
#
_model_server_result.job_id            UVU1LNCp8DvHmK4sZVPkYA 
_model_server_result.datetime_utc      '2025-06-20 07:46:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":403}' 
#
_entry.id    6XVF 
#
_exptl.entry_id    6XVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XVF 
_cell.length_a            209.869 
_cell.length_b            209.869 
_cell.length_c            342.418 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      16 
_struct_asym.id                             R 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 731 n n 
C1B O1B LMT sing 732 n n 
C1B O5B LMT sing 733 n n 
C1B H1B LMT sing 734 n n 
C2B C3B LMT sing 735 n n 
C2B O2B LMT sing 736 n n 
C2B H2B LMT sing 737 n n 
C3B C4B LMT sing 738 n n 
C3B O3B LMT sing 739 n n 
C3B H3B LMT sing 740 n n 
C4B C5B LMT sing 741 n n 
C4B O4' LMT sing 742 n n 
C4B H4B LMT sing 743 n n 
C5B C6B LMT sing 744 n n 
C5B O5B LMT sing 745 n n 
C5B H5B LMT sing 746 n n 
C6B O6B LMT sing 747 n n 
C6B "H6'2" LMT sing 748 n n 
C6B "H6'1" LMT sing 749 n n 
O1B C4' LMT sing 750 n n 
O2B H2O1 LMT sing 751 n n 
O3B H3O1 LMT sing 752 n n 
O4' H4O1 LMT sing 753 n n 
O6B H6B LMT sing 754 n n 
C1' C2' LMT sing 755 n n 
C1' O1' LMT sing 756 n n 
C1' O5' LMT sing 757 n n 
C1' H1' LMT sing 758 n n 
C2' C3' LMT sing 759 n n 
C2' O2' LMT sing 760 n n 
C2' H2' LMT sing 761 n n 
C3' C4' LMT sing 762 n n 
C3' O3' LMT sing 763 n n 
C3' H3' LMT sing 764 n n 
C4' C5' LMT sing 765 n n 
C4' H4' LMT sing 766 n n 
C5' C6' LMT sing 767 n n 
C5' O5' LMT sing 768 n n 
C5' H5' LMT sing 769 n n 
C6' O6' LMT sing 770 n n 
C6' H6D LMT sing 771 n n 
C6' H6E LMT sing 772 n n 
O1' C1 LMT sing 773 n n 
O2' H2O2 LMT sing 774 n n 
O3' H3O2 LMT sing 775 n n 
O6' H6' LMT sing 776 n n 
C1 C2 LMT sing 777 n n 
C1 H12 LMT sing 778 n n 
C1 H11 LMT sing 779 n n 
C2 C3 LMT sing 780 n n 
C2 H22 LMT sing 781 n n 
C2 H21 LMT sing 782 n n 
C3 C4 LMT sing 783 n n 
C3 H32 LMT sing 784 n n 
C3 H31 LMT sing 785 n n 
C4 C5 LMT sing 786 n n 
C4 H42 LMT sing 787 n n 
C4 H41 LMT sing 788 n n 
C5 C6 LMT sing 789 n n 
C5 H52 LMT sing 790 n n 
C5 H51 LMT sing 791 n n 
C6 C7 LMT sing 792 n n 
C6 H62 LMT sing 793 n n 
C6 H61 LMT sing 794 n n 
C7 C8 LMT sing 795 n n 
C7 H72 LMT sing 796 n n 
C7 H71 LMT sing 797 n n 
C8 C9 LMT sing 798 n n 
C8 H82 LMT sing 799 n n 
C8 H81 LMT sing 800 n n 
C9 C10 LMT sing 801 n n 
C9 H92 LMT sing 802 n n 
C9 H91 LMT sing 803 n n 
C10 C11 LMT sing 804 n n 
C10 H102 LMT sing 805 n n 
C10 H101 LMT sing 806 n n 
C11 C12 LMT sing 807 n n 
C11 H112 LMT sing 808 n n 
C11 H111 LMT sing 809 n n 
C12 H123 LMT sing 810 n n 
C12 H122 LMT sing 811 n n 
C12 H121 LMT sing 812 n n 
#
_atom_sites.entry_id                     6XVF 
_atom_sites.fract_transf_matrix[1][1]    0.004765 
_atom_sites.fract_transf_matrix[1][2]    0.002751 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 PO4 A 1 503 503 PO4 PO4 . 
N 14 CDL A 1 504 401 CDL CDL . 
O 13 PO4 B 1 501 501 PO4 PO4 . 
P 15 HEM C 1 401 402 HEM HEM . 
Q 15 HEM C 1 402 403 HEM HEM . 
R 16 LMT C 1 403 405 LMT LMT . 
S 11 PG4 C 1 404 406 PG4 PG4 . 
T 11 PG4 C 1 405 407 PG4 PG4 . 
U 14 CDL C 1 406 408 CDL CDL . 
V 17 PEE C 1 407 409 PEE PEE . 
W 18 JAG C 1 408 404 JAG JAG . 
X 13 PO4 C 1 409 410 PO4 PO4 . 
Y 19 HEC D 1 501 501 HEC HEC . 
Z 13 PO4 D 1 502 502 PO4 PO4 . 
AA 14 CDL D 1 503 503 CDL CDL . 
BA 20 FES E 1 201 201 FES FES . 
CA 21 PX4 E 1 202 202 PX4 PX4 . 
DA 13 PO4 E 1 203 203 PO4 PO4 . 
EA 17 PEE E 1 204 204 PEE PEE . 
FA 14 CDL E 1 205 205 CDL CDL . 
GA 13 PO4 F 1 501 501 PO4 PO4 . 
HA 13 PO4 G 1 101 101 PO4 PO4 . 
IA 13 PO4 G 1 102 102 PO4 PO4 . 
JA 13 PO4 G 1 103 103 PO4 PO4 . 
KA 22 HOH A 1 601 504 HOH HOH . 
KA 22 HOH A 2 602 508 HOH HOH . 
KA 22 HOH A 3 603 507 HOH HOH . 
KA 22 HOH A 4 604 505 HOH HOH . 
KA 22 HOH A 5 605 509 HOH HOH . 
KA 22 HOH A 6 606 506 HOH HOH . 
LA 22 HOH B 1 601 502 HOH HOH . 
LA 22 HOH B 2 602 503 HOH HOH . 
MA 22 HOH C 1 501 412 HOH HOH . 
MA 22 HOH C 2 502 414 HOH HOH . 
MA 22 HOH C 3 503 411 HOH HOH . 
MA 22 HOH C 4 504 413 HOH HOH . 
NA 22 HOH D 1 601 505 HOH HOH . 
NA 22 HOH D 2 602 504 HOH HOH . 
OA 22 HOH F 1 601 502 HOH HOH . 
PA 22 HOH G 1 201 104 HOH HOH . 
QA 22 HOH I 1 101 101 HOH HOH . 
QA 22 HOH I 2 102 102 HOH HOH . 
RA 22 HOH J 1 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . R 16 -40.688 -73.955 69.042 1 256.16 ? C1B LMT 403 C 1 
HETATM 2 C C2B LMT . . . R 16 -40.738 -75.372 68.423 1 254.39 ? C2B LMT 403 C 1 
HETATM 3 C C3B LMT . . . R 16 -42.119 -75.78 67.898 1 251.52 ? C3B LMT 403 C 1 
HETATM 4 C C4B LMT . . . R 16 -43.26 -75.408 68.846 1 249.66 ? C4B LMT 403 C 1 
HETATM 5 C C5B LMT . . . R 16 -43.202 -73.921 69.2 1 247.66 ? C5B LMT 403 C 1 
HETATM 6 C C6B LMT . . . R 16 -44.255 -73.528 70.232 1 243.49 ? C6B LMT 403 C 1 
HETATM 7 O O1B LMT . . . R 16 -40.242 -72.965 68.089 1 256.15 ? O1B LMT 403 C 1 
HETATM 8 O O2B LMT . . . R 16 -39.794 -75.506 67.35 1 254 ? O2B LMT 403 C 1 
HETATM 9 O O3B LMT . . . R 16 -42.121 -77.197 67.693 1 251.02 ? O3B LMT 403 C 1 
HETATM 10 O O4' LMT . . . R 16 -44.514 -75.712 68.225 1 247.39 ? O4' LMT 403 C 1 
HETATM 11 O O5B LMT . . . R 16 -41.912 -73.565 69.735 1 254.19 ? O5B LMT 403 C 1 
HETATM 12 O O6B LMT . . . R 16 -45.559 -73.69 69.671 1 239.77 ? O6B LMT 403 C 1 
HETATM 13 C C1' LMT . . . R 16 -38.831 -69.022 69.28 1 253.5 ? C1' LMT 403 C 1 
HETATM 14 C C2' LMT . . . R 16 -37.982 -70.287 69.577 1 253.13 ? C2' LMT 403 C 1 
HETATM 15 C C3' LMT . . . R 16 -38.306 -71.458 68.635 1 252.69 ? C3' LMT 403 C 1 
HETATM 16 C C4' LMT . . . R 16 -39.815 -71.736 68.707 1 254.96 ? C4' LMT 403 C 1 
HETATM 17 C C5' LMT . . . R 16 -40.511 -70.492 68.125 1 254.28 ? C5' LMT 403 C 1 
HETATM 18 C C6' LMT . . . R 16 -42.024 -70.654 67.895 1 249.91 ? C6' LMT 403 C 1 
HETATM 19 O O1' LMT . . . R 16 -38.815 -68.159 70.436 1 250.37 ? O1' LMT 403 C 1 
HETATM 20 O O2' LMT . . . R 16 -36.579 -69.982 69.546 1 249.57 ? O2' LMT 403 C 1 
HETATM 21 O O3' LMT . . . R 16 -37.541 -72.612 68.994 1 251.91 ? O3' LMT 403 C 1 
HETATM 22 O O5' LMT . . . R 16 -40.216 -69.328 68.942 1 256.37 ? O5' LMT 403 C 1 
HETATM 23 O O6' LMT . . . R 16 -42.762 -70.748 69.121 1 246.16 ? O6' LMT 403 C 1 
HETATM 24 C C1 LMT . . . R 16 -38.002 -66.982 70.351 1 244.14 ? C1 LMT 403 C 1 
HETATM 25 C C2 LMT . . . R 16 -36.833 -67.098 71.337 1 239.44 ? C2 LMT 403 C 1 
HETATM 26 C C3 LMT . . . R 16 -36.089 -65.785 71.563 1 235.33 ? C3 LMT 403 C 1 
HETATM 27 C C4 LMT . . . R 16 -35.283 -65.358 70.335 1 231.49 ? C4 LMT 403 C 1 
HETATM 28 C C5 LMT . . . R 16 -35.22 -63.841 70.193 1 229.4 ? C5 LMT 403 C 1 
HETATM 29 C C6 LMT . . . R 16 -36.357 -63.238 69.358 1 224.79 ? C6 LMT 403 C 1 
HETATM 30 C C7 LMT . . . R 16 -37.354 -62.418 70.187 1 223.23 ? C7 LMT 403 C 1 
HETATM 31 C C8 LMT . . . R 16 -36.839 -61.023 70.571 1 222.18 ? C8 LMT 403 C 1 
HETATM 32 C C9 LMT . . . R 16 -37.269 -60.547 71.968 1 220.43 ? C9 LMT 403 C 1 
HETATM 33 C C10 LMT . . . R 16 -36.554 -61.251 73.132 1 219.19 ? C10 LMT 403 C 1 
HETATM 34 C C11 LMT . . . R 16 -35.686 -60.334 73.992 1 218.65 ? C11 LMT 403 C 1 
HETATM 35 C C12 LMT . . . R 16 -34.816 -61.145 74.929 1 217.68 ? C12 LMT 403 C 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#