data_6XVF # _model_server_result.job_id lz-_OCapgcK2UG-UA05N1g _model_server_result.datetime_utc '2024-11-23 14:24:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":404}' # _entry.id 6XVF # _exptl.entry_id 6XVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XVF _cell.length_a 209.869 _cell.length_b 209.869 _cell.length_c 342.418 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 S N N ? 11 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 984 n n O1 HO1 PG4 sing 985 n n C1 C2 PG4 sing 986 n n C1 H11 PG4 sing 987 n n C1 H12 PG4 sing 988 n n C2 O2 PG4 sing 989 n n C2 H21 PG4 sing 990 n n C2 H22 PG4 sing 991 n n O2 C3 PG4 sing 992 n n C3 C4 PG4 sing 993 n n C3 H31 PG4 sing 994 n n C3 H32 PG4 sing 995 n n C4 O3 PG4 sing 996 n n C4 H41 PG4 sing 997 n n C4 H42 PG4 sing 998 n n O3 C5 PG4 sing 999 n n C5 C6 PG4 sing 1000 n n C5 H51 PG4 sing 1001 n n C5 H52 PG4 sing 1002 n n C6 O4 PG4 sing 1003 n n C6 H61 PG4 sing 1004 n n C6 H62 PG4 sing 1005 n n O4 C7 PG4 sing 1006 n n C7 C8 PG4 sing 1007 n n C7 H71 PG4 sing 1008 n n C7 H72 PG4 sing 1009 n n C8 O5 PG4 sing 1010 n n C8 H81 PG4 sing 1011 n n C8 H82 PG4 sing 1012 n n O5 HO5 PG4 sing 1013 n n # _atom_sites.entry_id 6XVF _atom_sites.fract_transf_matrix[1][1] 0.004765 _atom_sites.fract_transf_matrix[1][2] 0.002751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 PO4 A 1 503 503 PO4 PO4 . N 14 CDL A 1 504 401 CDL CDL . O 13 PO4 B 1 501 501 PO4 PO4 . P 15 HEM C 1 401 402 HEM HEM . Q 15 HEM C 1 402 403 HEM HEM . R 16 LMT C 1 403 405 LMT LMT . S 11 PG4 C 1 404 406 PG4 PG4 . T 11 PG4 C 1 405 407 PG4 PG4 . U 14 CDL C 1 406 408 CDL CDL . V 17 PEE C 1 407 409 PEE PEE . W 18 JAG C 1 408 404 JAG JAG . X 13 PO4 C 1 409 410 PO4 PO4 . Y 19 HEC D 1 501 501 HEC HEC . Z 13 PO4 D 1 502 502 PO4 PO4 . AA 14 CDL D 1 503 503 CDL CDL . BA 20 FES E 1 201 201 FES FES . CA 21 PX4 E 1 202 202 PX4 PX4 . DA 13 PO4 E 1 203 203 PO4 PO4 . EA 17 PEE E 1 204 204 PEE PEE . FA 14 CDL E 1 205 205 CDL CDL . GA 13 PO4 F 1 501 501 PO4 PO4 . HA 13 PO4 G 1 101 101 PO4 PO4 . IA 13 PO4 G 1 102 102 PO4 PO4 . JA 13 PO4 G 1 103 103 PO4 PO4 . KA 22 HOH A 1 601 504 HOH HOH . KA 22 HOH A 2 602 508 HOH HOH . KA 22 HOH A 3 603 507 HOH HOH . KA 22 HOH A 4 604 505 HOH HOH . KA 22 HOH A 5 605 509 HOH HOH . KA 22 HOH A 6 606 506 HOH HOH . LA 22 HOH B 1 601 502 HOH HOH . LA 22 HOH B 2 602 503 HOH HOH . MA 22 HOH C 1 501 412 HOH HOH . MA 22 HOH C 2 502 414 HOH HOH . MA 22 HOH C 3 503 411 HOH HOH . MA 22 HOH C 4 504 413 HOH HOH . NA 22 HOH D 1 601 505 HOH HOH . NA 22 HOH D 2 602 504 HOH HOH . OA 22 HOH F 1 601 502 HOH HOH . PA 22 HOH G 1 201 104 HOH HOH . QA 22 HOH I 1 101 101 HOH HOH . QA 22 HOH I 2 102 102 HOH HOH . RA 22 HOH J 1 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . S 11 -62.577 -82.63 44.833 1 165.78 ? O1 PG4 404 C 1 HETATM 2 C C1 PG4 . . . S 11 -61.831 -82.628 46.06 1 168.67 ? C1 PG4 404 C 1 HETATM 3 C C2 PG4 . . . S 11 -60.339 -82.881 45.817 1 168.87 ? C2 PG4 404 C 1 HETATM 4 O O2 PG4 . . . S 11 -59.584 -82.027 46.683 1 169.37 ? O2 PG4 404 C 1 HETATM 5 C C3 PG4 . . . S 11 -58.171 -82.228 46.602 1 166.93 ? C3 PG4 404 C 1 HETATM 6 C C4 PG4 . . . S 11 -57.44 -80.915 46.298 1 163.68 ? C4 PG4 404 C 1 HETATM 7 O O3 PG4 . . . S 11 -56.561 -80.544 47.366 1 160.71 ? O3 PG4 404 C 1 HETATM 8 C C5 PG4 . . . S 11 -55.181 -80.517 46.983 1 157.33 ? C5 PG4 404 C 1 HETATM 9 C C6 PG4 . . . S 11 -54.458 -79.469 47.825 1 154.73 ? C6 PG4 404 C 1 HETATM 10 O O4 PG4 . . . S 11 -53.067 -79.757 47.998 1 152.4 ? O4 PG4 404 C 1 HETATM 11 C C7 PG4 . . . S 11 -52.521 -78.983 49.07 1 149.8 ? C7 PG4 404 C 1 HETATM 12 C C8 PG4 . . . S 11 -51.018 -78.837 48.901 1 148.14 ? C8 PG4 404 C 1 HETATM 13 O O5 PG4 . . . S 11 -50.487 -78.275 50.097 1 147.04 ? O5 PG4 404 C 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #