data_6XVF # _model_server_result.job_id 7pd97XoLVX52p8lk09sbGg _model_server_result.datetime_utc '2024-11-23 14:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":408}' # _entry.id 6XVF # _exptl.entry_id 6XVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.405 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-5,6,7,8-tetrahydro-3~{H}-quinolin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XVF _cell.length_a 209.869 _cell.length_b 209.869 _cell.length_c 342.418 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C23 H20 F3 N O3' _chem_comp.formula_weight 415.405 _chem_comp.id JAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-5,6,7,8-tetrahydro-3~{H}-quinolin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 JAG doub 657 n y C21 C16 JAG sing 658 n y O1 C16 JAG sing 659 n n O1 C13 JAG sing 660 n n C20 C19 JAG sing 661 n y C16 C17 JAG doub 662 n y C14 C13 JAG doub 663 n y C14 C15 JAG sing 664 n y C19 O2 JAG sing 665 n n C19 C18 JAG doub 666 n y C17 C18 JAG sing 667 n y O2 C22 JAG sing 668 n n C13 C12 JAG sing 669 n y C15 C10 JAG doub 670 n y F C22 JAG sing 671 n n C22 F2 JAG sing 672 n n C22 F1 JAG sing 673 n n C12 C11 JAG doub 674 n y C10 C11 JAG sing 675 n y C10 C7 JAG sing 676 n n C9 C6 JAG sing 677 n n C7 C6 JAG sing 678 n n C7 C8 JAG sing 679 n n C6 N JAG doub 680 n n O C8 JAG doub 681 n n C8 C5 JAG sing 682 n n N C4 JAG sing 683 n n C5 C4 JAG doub 684 n n C5 C JAG sing 685 n n C4 C3 JAG sing 686 n n C C1 JAG sing 687 n n C1 C2 JAG sing 688 n n C3 C2 JAG sing 689 n n C18 H1 JAG sing 690 n n C17 H2 JAG sing 691 n n C20 H3 JAG sing 692 n n C21 H4 JAG sing 693 n n C12 H5 JAG sing 694 n n C11 H6 JAG sing 695 n n C14 H7 JAG sing 696 n n C15 H8 JAG sing 697 n n C7 H9 JAG sing 698 n n C H10 JAG sing 699 n n C H11 JAG sing 700 n n C9 H12 JAG sing 701 n n C9 H13 JAG sing 702 n n C9 H14 JAG sing 703 n n C3 H15 JAG sing 704 n n C3 H16 JAG sing 705 n n C2 H17 JAG sing 706 n n C1 H18 JAG sing 707 n n C2 H19 JAG sing 708 n n C1 H20 JAG sing 709 n n # _atom_sites.entry_id 6XVF _atom_sites.fract_transf_matrix[1][1] 0.004765 _atom_sites.fract_transf_matrix[1][2] 0.002751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 PO4 A 1 503 503 PO4 PO4 . N 14 CDL A 1 504 401 CDL CDL . O 13 PO4 B 1 501 501 PO4 PO4 . P 15 HEM C 1 401 402 HEM HEM . Q 15 HEM C 1 402 403 HEM HEM . R 16 LMT C 1 403 405 LMT LMT . S 11 PG4 C 1 404 406 PG4 PG4 . T 11 PG4 C 1 405 407 PG4 PG4 . U 14 CDL C 1 406 408 CDL CDL . V 17 PEE C 1 407 409 PEE PEE . W 18 JAG C 1 408 404 JAG JAG . X 13 PO4 C 1 409 410 PO4 PO4 . Y 19 HEC D 1 501 501 HEC HEC . Z 13 PO4 D 1 502 502 PO4 PO4 . AA 14 CDL D 1 503 503 CDL CDL . BA 20 FES E 1 201 201 FES FES . CA 21 PX4 E 1 202 202 PX4 PX4 . DA 13 PO4 E 1 203 203 PO4 PO4 . EA 17 PEE E 1 204 204 PEE PEE . FA 14 CDL E 1 205 205 CDL CDL . GA 13 PO4 F 1 501 501 PO4 PO4 . HA 13 PO4 G 1 101 101 PO4 PO4 . IA 13 PO4 G 1 102 102 PO4 PO4 . JA 13 PO4 G 1 103 103 PO4 PO4 . KA 22 HOH A 1 601 504 HOH HOH . KA 22 HOH A 2 602 508 HOH HOH . KA 22 HOH A 3 603 507 HOH HOH . KA 22 HOH A 4 604 505 HOH HOH . KA 22 HOH A 5 605 509 HOH HOH . KA 22 HOH A 6 606 506 HOH HOH . LA 22 HOH B 1 601 502 HOH HOH . LA 22 HOH B 2 602 503 HOH HOH . MA 22 HOH C 1 501 412 HOH HOH . MA 22 HOH C 2 502 414 HOH HOH . MA 22 HOH C 3 503 411 HOH HOH . MA 22 HOH C 4 504 413 HOH HOH . NA 22 HOH D 1 601 505 HOH HOH . NA 22 HOH D 2 602 504 HOH HOH . OA 22 HOH F 1 601 502 HOH HOH . PA 22 HOH G 1 201 104 HOH HOH . QA 22 HOH I 1 101 101 HOH HOH . QA 22 HOH I 2 102 102 HOH HOH . RA 22 HOH J 1 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F2 JAG . . . W 18 -65.2 -73.312 29.724 1 168.19 ? F2 JAG 408 C 1 HETATM 2 C C22 JAG . . . W 18 -66.01 -72.375 29.275 1 167.72 ? C22 JAG 408 C 1 HETATM 3 F F JAG . . . W 18 -67.219 -72.892 29.13 1 162.84 ? F JAG 408 C 1 HETATM 4 F F1 JAG . . . W 18 -66.078 -71.398 30.176 1 159.79 ? F1 JAG 408 C 1 HETATM 5 O O2 JAG . . . W 18 -65.508 -71.903 28.006 1 170.84 ? O2 JAG 408 C 1 HETATM 6 C C19 JAG . . . W 18 -65.38 -70.553 27.807 1 172.1 ? C19 JAG 408 C 1 HETATM 7 C C18 JAG . . . W 18 -64.188 -69.898 28.139 1 166.2 ? C18 JAG 408 C 1 HETATM 8 C C17 JAG . . . W 18 -64.069 -68.513 27.961 1 157.43 ? C17 JAG 408 C 1 HETATM 9 C C20 JAG . . . W 18 -66.464 -69.832 27.306 1 175.36 ? C20 JAG 408 C 1 HETATM 10 C C21 JAG . . . W 18 -66.344 -68.457 27.122 1 166.49 ? C21 JAG 408 C 1 HETATM 11 C C16 JAG . . . W 18 -65.151 -67.784 27.442 1 152.62 ? C16 JAG 408 C 1 HETATM 12 O O1 JAG . . . W 18 -65.099 -66.407 27.292 1 135.98 ? O1 JAG 408 C 1 HETATM 13 C C13 JAG . . . W 18 -66.014 -65.671 28.053 1 136.61 ? C13 JAG 408 C 1 HETATM 14 C C12 JAG . . . W 18 -66.451 -66.191 29.286 1 134.54 ? C12 JAG 408 C 1 HETATM 15 C C11 JAG . . . W 18 -67.377 -65.527 30.077 1 132.02 ? C11 JAG 408 C 1 HETATM 16 C C14 JAG . . . W 18 -66.552 -64.434 27.637 1 139.49 ? C14 JAG 408 C 1 HETATM 17 C C15 JAG . . . W 18 -67.489 -63.751 28.445 1 134.86 ? C15 JAG 408 C 1 HETATM 18 C C10 JAG . . . W 18 -67.906 -64.303 29.667 1 129.45 ? C10 JAG 408 C 1 HETATM 19 C C7 JAG . . . W 18 -68.897 -63.643 30.572 1 125.82 ? C7 JAG 408 C 1 HETATM 20 C C8 JAG . . . W 18 -68.564 -62.365 31.281 1 129.79 ? C8 JAG 408 C 1 HETATM 21 O O JAG . . . W 18 -67.457 -61.793 31.119 1 125.38 ? O JAG 408 C 1 HETATM 22 C C5 JAG . . . W 18 -69.609 -61.786 32.178 1 134.49 ? C5 JAG 408 C 1 HETATM 23 C C JAG . . . W 18 -69.386 -60.487 32.938 1 131.53 ? C JAG 408 C 1 HETATM 24 C C6 JAG . . . W 18 -70.252 -64.26 30.825 1 120.99 ? C6 JAG 408 C 1 HETATM 25 C C9 JAG . . . W 18 -70.699 -65.547 30.174 1 113.15 ? C9 JAG 408 C 1 HETATM 26 N N JAG . . . W 18 -71.137 -63.675 31.653 1 126.3 ? N JAG 408 C 1 HETATM 27 C C4 JAG . . . W 18 -70.912 -62.518 32.318 1 136.54 ? C4 JAG 408 C 1 HETATM 28 C C3 JAG . . . W 18 -71.99 -61.942 33.23 1 139.37 ? C3 JAG 408 C 1 HETATM 29 C C2 JAG . . . W 18 -72.017 -60.401 33.237 1 136.54 ? C2 JAG 408 C 1 HETATM 30 C C1 JAG . . . W 18 -70.677 -59.661 33.039 1 134.96 ? C1 JAG 408 C 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #