data_6XVF
#
_model_server_result.job_id            bXEtQB8GIakXI2k3oJhgKQ 
_model_server_result.datetime_utc      '2024-11-05 04:53:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    6XVF 
#
_exptl.entry_id    6XVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.42 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XVF 
_cell.length_a            209.869 
_cell.length_b            209.869 
_cell.length_c            342.418 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -104.9345 -181.751885 57.069667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      12 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 11 H CYS 24 1_555 H SG CYS 55 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 H SG CYS 27 H CYS 40 1_555 H SG CYS 41 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 C NE2 HIS 82 C HIS 83 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc2 C NE2 HIS 96 C HIS 97 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc3 C NE2 HIS 181 C HIS 182 1_555 P FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc4 C NE2 HIS 195 C HIS 196 1_555 Q FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 D SD MET 159 D MET 160 1_555 Y FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 E SG CYS 158 E CYS 158 1_555 BA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
#
_chem_comp.formula           'C17 H33 N O8 P -1' 
_chem_comp.formula_weight    410.42 
_chem_comp.id                6PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 6PE sing 1 n n 
O2 P1 6PE doub 2 n n 
P1 O3 6PE sing 3 n n 
P1 O8 6PE sing 4 n n 
O3 C1 6PE sing 5 n n 
C1 C2 6PE sing 6 n n 
C1 H1 6PE sing 7 n n 
C1 H2 6PE sing 8 n n 
C2 C3 6PE sing 9 n n 
C2 O6 6PE sing 10 n n 
C2 H3 6PE sing 11 n n 
C3 O4 6PE sing 12 n n 
C3 H4 6PE sing 13 n n 
C3 H5 6PE sing 14 n n 
O4 C4 6PE sing 15 n n 
C4 O5 6PE doub 16 n n 
C4 C5 6PE sing 17 n n 
C5 C6 6PE sing 18 n n 
C5 H6 6PE sing 19 n n 
C5 H7 6PE sing 20 n n 
C6 C7 6PE sing 21 n n 
C6 H8 6PE sing 22 n n 
C6 H9 6PE sing 23 n n 
C7 C8 6PE sing 24 n n 
C7 H10 6PE sing 25 n n 
C7 H11 6PE sing 26 n n 
C8 C9 6PE sing 27 n n 
C8 H12 6PE sing 28 n n 
C8 H13 6PE sing 29 n n 
C9 H14 6PE sing 30 n n 
C9 H15 6PE sing 31 n n 
C9 H16 6PE sing 32 n n 
O6 C10 6PE sing 33 n n 
C10 O7 6PE doub 34 n n 
C10 C11 6PE sing 35 n n 
C11 C12 6PE sing 36 n n 
C11 H17 6PE sing 37 n n 
C11 H18 6PE sing 38 n n 
C12 C13 6PE sing 39 n n 
C12 H19 6PE sing 40 n n 
C12 H20 6PE sing 41 n n 
C13 C14 6PE sing 42 n n 
C13 H21 6PE sing 43 n n 
C13 H22 6PE sing 44 n n 
C14 C15 6PE sing 45 n n 
C14 H23 6PE sing 46 n n 
C14 H24 6PE sing 47 n n 
C15 H25 6PE sing 48 n n 
C15 H26 6PE sing 49 n n 
C15 H27 6PE sing 50 n n 
O8 C16 6PE sing 51 n n 
C16 C17 6PE sing 52 n n 
C16 H28 6PE sing 53 n n 
C16 H29 6PE sing 54 n n 
C17 N1 6PE sing 55 n n 
C17 H30 6PE sing 56 n n 
C17 H31 6PE sing 57 n n 
N1 H32 6PE sing 58 n n 
N1 H33 6PE sing 59 n n 
#
_atom_sites.entry_id                     6XVF 
_atom_sites.fract_transf_matrix[1][1]    0.004765 
_atom_sites.fract_transf_matrix[1][2]    0.002751 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 PG4 A 1 501 501 PG4 PG4 . 
L 12 6PE A 1 502 502 6PE 6PE . 
M 13 PO4 A 1 503 503 PO4 PO4 . 
N 14 CDL A 1 504 401 CDL CDL . 
O 13 PO4 B 1 501 501 PO4 PO4 . 
P 15 HEM C 1 401 402 HEM HEM . 
Q 15 HEM C 1 402 403 HEM HEM . 
R 16 LMT C 1 403 405 LMT LMT . 
S 11 PG4 C 1 404 406 PG4 PG4 . 
T 11 PG4 C 1 405 407 PG4 PG4 . 
U 14 CDL C 1 406 408 CDL CDL . 
V 17 PEE C 1 407 409 PEE PEE . 
W 18 JAG C 1 408 404 JAG JAG . 
X 13 PO4 C 1 409 410 PO4 PO4 . 
Y 19 HEC D 1 501 501 HEC HEC . 
Z 13 PO4 D 1 502 502 PO4 PO4 . 
AA 14 CDL D 1 503 503 CDL CDL . 
BA 20 FES E 1 201 201 FES FES . 
CA 21 PX4 E 1 202 202 PX4 PX4 . 
DA 13 PO4 E 1 203 203 PO4 PO4 . 
EA 17 PEE E 1 204 204 PEE PEE . 
FA 14 CDL E 1 205 205 CDL CDL . 
GA 13 PO4 F 1 501 501 PO4 PO4 . 
HA 13 PO4 G 1 101 101 PO4 PO4 . 
IA 13 PO4 G 1 102 102 PO4 PO4 . 
JA 13 PO4 G 1 103 103 PO4 PO4 . 
KA 22 HOH A 1 601 504 HOH HOH . 
KA 22 HOH A 2 602 508 HOH HOH . 
KA 22 HOH A 3 603 507 HOH HOH . 
KA 22 HOH A 4 604 505 HOH HOH . 
KA 22 HOH A 5 605 509 HOH HOH . 
KA 22 HOH A 6 606 506 HOH HOH . 
LA 22 HOH B 1 601 502 HOH HOH . 
LA 22 HOH B 2 602 503 HOH HOH . 
MA 22 HOH C 1 501 412 HOH HOH . 
MA 22 HOH C 2 502 414 HOH HOH . 
MA 22 HOH C 3 503 411 HOH HOH . 
MA 22 HOH C 4 504 413 HOH HOH . 
NA 22 HOH D 1 601 505 HOH HOH . 
NA 22 HOH D 2 602 504 HOH HOH . 
OA 22 HOH F 1 601 502 HOH HOH . 
PA 22 HOH G 1 201 104 HOH HOH . 
QA 22 HOH I 1 101 101 HOH HOH . 
QA 22 HOH I 2 102 102 HOH HOH . 
RA 22 HOH J 1 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 6PE . . . L 12 -71.623 -56.416 16.177 1 178.1 ? O1 6PE 502 A 1 
HETATM 2 O O2 6PE . . . L 12 -70.083 -54.562 15.195 1 178.27 ? O2 6PE 502 A 1 
HETATM 3 P P1 6PE . . . L 12 -70.852 -55.855 15.007 1 178.71 ? P1 6PE 502 A 1 
HETATM 4 O O3 6PE . . . L 12 -69.853 -57.01 14.485 1 182.6 ? O3 6PE 502 A 1 
HETATM 5 C C1 6PE . . . L 12 -68.468 -56.984 14.839 1 189.3 ? C1 6PE 502 A 1 
HETATM 6 C C2 6PE . . . L 12 -68.169 -57.707 16.16 1 192.59 ? C2 6PE 502 A 1 
HETATM 7 C C3 6PE . . . L 12 -68.533 -59.203 16.116 1 192.94 ? C3 6PE 502 A 1 
HETATM 8 O O4 6PE . . . L 12 -68.541 -59.759 14.793 1 195.35 ? O4 6PE 502 A 1 
HETATM 9 C C4 6PE . . . L 12 -67.336 -60.323 14.185 1 200.21 ? C4 6PE 502 A 1 
HETATM 10 O O5 6PE . . . L 12 -66.241 -59.848 14.462 1 203.46 ? O5 6PE 502 A 1 
HETATM 11 C C5 6PE . . . L 12 -67.434 -61.488 13.217 1 200.47 ? C5 6PE 502 A 1 
HETATM 12 C C6 6PE . . . L 12 -67.036 -61.086 11.795 1 200.33 ? C6 6PE 502 A 1 
HETATM 13 C C7 6PE . . . L 12 -67.961 -61.683 10.737 1 198.48 ? C7 6PE 502 A 1 
HETATM 14 O O6 6PE . . . L 12 -66.774 -57.53 16.474 1 196.42 ? O6 6PE 502 A 1 
HETATM 15 C C10 6PE . . . L 12 -66.46 -56.667 17.626 1 195.04 ? C10 6PE 502 A 1 
HETATM 16 O O7 6PE . . . L 12 -66.304 -57.198 18.722 1 196.85 ? O7 6PE 502 A 1 
HETATM 17 C C11 6PE . . . L 12 -66.303 -55.161 17.459 1 190.52 ? C11 6PE 502 A 1 
HETATM 18 C C12 6PE . . . L 12 -66.138 -54.439 18.797 1 185.59 ? C12 6PE 502 A 1 
HETATM 19 C C13 6PE . . . L 12 -65.212 -53.245 18.639 1 184.71 ? C13 6PE 502 A 1 
HETATM 20 O O8 6PE . . . L 12 -71.89 -55.654 13.787 1 174.57 ? O8 6PE 502 A 1 
HETATM 21 C C16 6PE . . . L 12 -72.848 -56.648 13.429 1 169.08 ? C16 6PE 502 A 1 
HETATM 22 C C17 6PE . . . L 12 -74.135 -56.011 12.926 1 164.92 ? C17 6PE 502 A 1 
HETATM 23 N N1 6PE . . . L 12 -74.067 -55.912 11.484 1 163.13 ? N1 6PE 502 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#