data_6XVG # _model_server_result.job_id Fe8VlkM2h-VUgsJULWuujA _model_server_result.datetime_utc '2024-11-07 13:43:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1003}' # _entry.id 6XVG # _exptl.entry_id 6XVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.71 _cell.angle_gamma 90 _cell.entry_id 6XVG _cell.length_a 89.51 _cell.length_b 136.534 _cell.length_c 89.873 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,TA 1 1 B,L,M,N,O,P,Q,R,S,T,UA 2 1 C,U,V,W,X,Y,Z,AA,VA 3 1 D,BA,CA,DA,EA,FA,GA,HA,WA 4 1 E,IA,JA,KA,LA,MA,NA,OA,PA,XA 5 1 F,QA,RA,SA,YA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 M N N ? 3 W N N ? 3 CA N N ? 3 KA N N ? 3 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 139 A CYS 141 1_555 H ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A SG CYS 142 A CYS 144 1_555 H ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 A SG CYS 164 A CYS 166 1_555 H ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 A SG CYS 175 A CYS 177 1_555 H ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 B SG CYS 139 B CYS 141 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 B SG CYS 142 B CYS 144 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 B SG CYS 164 B CYS 166 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 B SG CYS 175 B CYS 177 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc9 C SG CYS 139 C CYS 141 1_555 W ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc10 C SG CYS 142 C CYS 144 1_555 W ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 C SG CYS 164 C CYS 166 1_555 W ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc12 C SG CYS 175 C CYS 177 1_555 W ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc13 D SG CYS 139 D CYS 141 1_555 CA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc14 D SG CYS 142 D CYS 144 1_555 CA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc15 D SG CYS 164 D CYS 166 1_555 CA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc16 D SG CYS 175 D CYS 177 1_555 CA ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc17 E SG CYS 139 E CYS 141 1_555 KA ZN ZN . E ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc18 E SG CYS 142 E CYS 144 1_555 KA ZN ZN . E ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc19 E SG CYS 164 E CYS 166 1_555 KA ZN ZN . E ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc20 E SG CYS 175 E CYS 177 1_555 KA ZN ZN . E ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc21 F SG CYS 139 F CYS 141 1_555 RA ZN ZN . F ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc22 F SG CYS 142 F CYS 144 1_555 RA ZN ZN . F ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc23 F SG CYS 164 F CYS 166 1_555 RA ZN ZN . F ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 F SG CYS 175 F CYS 177 1_555 RA ZN ZN . F ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XVG _atom_sites.fract_transf_matrix[1][1] 0.011172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 AR6 A 1 401 500 AR6 AR6 . H 3 ZN A 1 402 501 ZN ZN . I 4 GOL A 1 403 701 GOL GOL . J 5 8L9 A 1 404 901 8L9 LIG . K 6 SO4 A 1 405 2 SO4 SO4 . L 2 AR6 B 1 401 500 AR6 AR6 . M 3 ZN B 1 402 501 ZN ZN . N 4 GOL B 1 403 801 GOL GOL . O 5 8L9 B 1 404 1501 8L9 LIG . P 6 SO4 B 1 405 1 SO4 SO4 . Q 6 SO4 B 1 406 3 SO4 SO4 . R 6 SO4 B 1 407 5 SO4 SO4 . S 6 SO4 B 1 408 7 SO4 SO4 . T 6 SO4 B 1 409 13 SO4 SO4 . U 4 GOL C 1 1001 1001 GOL GOL . V 2 AR6 C 1 1002 500 AR6 AR6 . W 3 ZN C 1 1003 501 ZN ZN . X 4 GOL C 1 1004 801 GOL GOL . Y 4 GOL C 1 1005 901 GOL GOL . Z 5 8L9 C 1 1006 1001 8L9 LIG . AA 6 SO4 C 1 1007 11 SO4 SO4 . BA 2 AR6 D 1 401 500 AR6 AR6 . CA 3 ZN D 1 402 501 ZN ZN . DA 4 GOL D 1 403 701 GOL GOL . EA 5 8L9 D 1 404 801 8L9 LIG . FA 6 SO4 D 1 405 6 SO4 SO4 . GA 6 SO4 D 1 406 9 SO4 SO4 . HA 6 SO4 D 1 407 10 SO4 SO4 . IA 4 GOL E 1 701 701 GOL GOL . JA 2 AR6 E 1 702 500 AR6 AR6 . KA 3 ZN E 1 703 501 ZN ZN . LA 4 GOL E 1 704 701 GOL GOL . MA 5 8L9 E 1 705 801 8L9 LIG . NA 6 SO4 E 1 706 4 SO4 SO4 . OA 6 SO4 E 1 707 8 SO4 SO4 . PA 6 SO4 E 1 708 12 SO4 SO4 . QA 2 AR6 F 1 401 500 AR6 AR6 . RA 3 ZN F 1 402 501 ZN ZN . SA 5 8L9 F 1 403 601 8L9 LIG . TA 7 HOH A 1 501 12 HOH HOH . TA 7 HOH A 2 502 146 HOH HOH . TA 7 HOH A 3 503 78 HOH HOH . TA 7 HOH A 4 504 154 HOH HOH . TA 7 HOH A 5 505 33 HOH HOH . TA 7 HOH A 6 506 61 HOH HOH . TA 7 HOH A 7 507 140 HOH HOH . TA 7 HOH A 8 508 102 HOH HOH . TA 7 HOH A 9 509 35 HOH HOH . TA 7 HOH A 10 510 73 HOH HOH . TA 7 HOH A 11 511 79 HOH HOH . TA 7 HOH A 12 512 120 HOH HOH . TA 7 HOH A 13 513 2 HOH HOH . TA 7 HOH A 14 514 25 HOH HOH . TA 7 HOH A 15 515 127 HOH HOH . TA 7 HOH A 16 516 17 HOH HOH . TA 7 HOH A 17 517 15 HOH HOH . TA 7 HOH A 18 518 106 HOH HOH . TA 7 HOH A 19 519 32 HOH HOH . TA 7 HOH A 20 520 88 HOH HOH . TA 7 HOH A 21 521 87 HOH HOH . TA 7 HOH A 22 522 14 HOH HOH . TA 7 HOH A 23 523 60 HOH HOH . TA 7 HOH A 24 524 34 HOH HOH . TA 7 HOH A 25 525 165 HOH HOH . TA 7 HOH A 26 526 113 HOH HOH . TA 7 HOH A 27 527 100 HOH HOH . TA 7 HOH A 28 528 148 HOH HOH . TA 7 HOH A 29 529 1 HOH HOH . UA 7 HOH B 1 501 91 HOH HOH . UA 7 HOH B 2 502 166 HOH HOH . UA 7 HOH B 3 503 130 HOH HOH . UA 7 HOH B 4 504 26 HOH HOH . UA 7 HOH B 5 505 31 HOH HOH . UA 7 HOH B 6 506 93 HOH HOH . UA 7 HOH B 7 507 8 HOH HOH . UA 7 HOH B 8 508 124 HOH HOH . UA 7 HOH B 9 509 107 HOH HOH . UA 7 HOH B 10 510 36 HOH HOH . UA 7 HOH B 11 511 71 HOH HOH . UA 7 HOH B 12 512 81 HOH HOH . UA 7 HOH B 13 513 94 HOH HOH . UA 7 HOH B 14 514 169 HOH HOH . UA 7 HOH B 15 515 133 HOH HOH . UA 7 HOH B 16 516 126 HOH HOH . UA 7 HOH B 17 517 16 HOH HOH . UA 7 HOH B 18 518 89 HOH HOH . UA 7 HOH B 19 519 59 HOH HOH . UA 7 HOH B 20 520 38 HOH HOH . UA 7 HOH B 21 521 108 HOH HOH . UA 7 HOH B 22 522 37 HOH HOH . UA 7 HOH B 23 523 23 HOH HOH . UA 7 HOH B 24 524 135 HOH HOH . UA 7 HOH B 25 525 90 HOH HOH . UA 7 HOH B 26 526 92 HOH HOH . UA 7 HOH B 27 527 75 HOH HOH . UA 7 HOH B 28 528 28 HOH HOH . UA 7 HOH B 29 529 30 HOH HOH . UA 7 HOH B 30 530 10 HOH HOH . UA 7 HOH B 31 531 103 HOH HOH . UA 7 HOH B 32 532 119 HOH HOH . VA 7 HOH C 1 1101 76 HOH HOH . VA 7 HOH C 2 1102 116 HOH HOH . VA 7 HOH C 3 1103 164 HOH HOH . VA 7 HOH C 4 1104 137 HOH HOH . VA 7 HOH C 5 1105 159 HOH HOH . VA 7 HOH C 6 1106 147 HOH HOH . VA 7 HOH C 7 1107 142 HOH HOH . VA 7 HOH C 8 1108 27 HOH HOH . VA 7 HOH C 9 1109 21 HOH HOH . VA 7 HOH C 10 1110 158 HOH HOH . VA 7 HOH C 11 1111 52 HOH HOH . VA 7 HOH C 12 1112 156 HOH HOH . VA 7 HOH C 13 1113 122 HOH HOH . VA 7 HOH C 14 1114 50 HOH HOH . VA 7 HOH C 15 1115 125 HOH HOH . VA 7 HOH C 16 1116 145 HOH HOH . VA 7 HOH C 17 1117 20 HOH HOH . VA 7 HOH C 18 1118 104 HOH HOH . VA 7 HOH C 19 1119 48 HOH HOH . VA 7 HOH C 20 1120 98 HOH HOH . VA 7 HOH C 21 1121 96 HOH HOH . VA 7 HOH C 22 1122 13 HOH HOH . VA 7 HOH C 23 1123 19 HOH HOH . VA 7 HOH C 24 1124 18 HOH HOH . VA 7 HOH C 25 1125 109 HOH HOH . VA 7 HOH C 26 1126 58 HOH HOH . VA 7 HOH C 27 1127 83 HOH HOH . VA 7 HOH C 28 1128 51 HOH HOH . VA 7 HOH C 29 1129 64 HOH HOH . VA 7 HOH C 30 1130 117 HOH HOH . VA 7 HOH C 31 1131 5 HOH HOH . VA 7 HOH C 32 1132 49 HOH HOH . VA 7 HOH C 33 1133 144 HOH HOH . VA 7 HOH C 34 1134 3 HOH HOH . VA 7 HOH C 35 1135 134 HOH HOH . VA 7 HOH C 36 1136 162 HOH HOH . VA 7 HOH C 37 1137 65 HOH HOH . VA 7 HOH C 38 1138 131 HOH HOH . VA 7 HOH C 39 1139 95 HOH HOH . VA 7 HOH C 40 1140 115 HOH HOH . WA 7 HOH D 1 501 111 HOH HOH . WA 7 HOH D 2 502 155 HOH HOH . WA 7 HOH D 3 503 46 HOH HOH . WA 7 HOH D 4 504 157 HOH HOH . WA 7 HOH D 5 505 143 HOH HOH . WA 7 HOH D 6 506 24 HOH HOH . WA 7 HOH D 7 507 132 HOH HOH . WA 7 HOH D 8 508 7 HOH HOH . WA 7 HOH D 9 509 105 HOH HOH . WA 7 HOH D 10 510 43 HOH HOH . WA 7 HOH D 11 511 139 HOH HOH . WA 7 HOH D 12 512 66 HOH HOH . WA 7 HOH D 13 513 138 HOH HOH . WA 7 HOH D 14 514 6 HOH HOH . WA 7 HOH D 15 515 82 HOH HOH . WA 7 HOH D 16 516 47 HOH HOH . WA 7 HOH D 17 517 112 HOH HOH . WA 7 HOH D 18 518 151 HOH HOH . WA 7 HOH D 19 519 45 HOH HOH . WA 7 HOH D 20 520 44 HOH HOH . WA 7 HOH D 21 521 22 HOH HOH . WA 7 HOH D 22 522 62 HOH HOH . WA 7 HOH D 23 523 118 HOH HOH . WA 7 HOH D 24 524 99 HOH HOH . WA 7 HOH D 25 525 114 HOH HOH . WA 7 HOH D 26 526 150 HOH HOH . WA 7 HOH D 27 527 63 HOH HOH . WA 7 HOH D 28 528 101 HOH HOH . WA 7 HOH D 29 529 97 HOH HOH . XA 7 HOH E 1 801 85 HOH HOH . XA 7 HOH E 2 802 39 HOH HOH . XA 7 HOH E 3 803 42 HOH HOH . XA 7 HOH E 4 804 40 HOH HOH . XA 7 HOH E 5 805 161 HOH HOH . XA 7 HOH E 6 806 74 HOH HOH . XA 7 HOH E 7 807 141 HOH HOH . XA 7 HOH E 8 808 110 HOH HOH . XA 7 HOH E 9 809 152 HOH HOH . XA 7 HOH E 10 810 128 HOH HOH . XA 7 HOH E 11 811 160 HOH HOH . XA 7 HOH E 12 812 121 HOH HOH . XA 7 HOH E 13 813 77 HOH HOH . XA 7 HOH E 14 814 86 HOH HOH . XA 7 HOH E 15 815 4 HOH HOH . XA 7 HOH E 16 816 153 HOH HOH . XA 7 HOH E 17 817 84 HOH HOH . XA 7 HOH E 18 818 129 HOH HOH . XA 7 HOH E 19 819 136 HOH HOH . XA 7 HOH E 20 820 70 HOH HOH . XA 7 HOH E 21 821 29 HOH HOH . XA 7 HOH E 22 822 80 HOH HOH . XA 7 HOH E 23 823 41 HOH HOH . XA 7 HOH E 24 824 69 HOH HOH . XA 7 HOH E 25 825 163 HOH HOH . YA 7 HOH F 1 501 167 HOH HOH . YA 7 HOH F 2 502 168 HOH HOH . YA 7 HOH F 3 503 57 HOH HOH . YA 7 HOH F 4 504 68 HOH HOH . YA 7 HOH F 5 505 56 HOH HOH . YA 7 HOH F 6 506 72 HOH HOH . YA 7 HOH F 7 507 53 HOH HOH . YA 7 HOH F 8 508 9 HOH HOH . YA 7 HOH F 9 509 55 HOH HOH . YA 7 HOH F 10 510 54 HOH HOH . YA 7 HOH F 11 511 123 HOH HOH . YA 7 HOH F 12 512 149 HOH HOH . YA 7 HOH F 13 513 67 HOH HOH . YA 7 HOH F 14 514 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 3 _atom_site.Cartn_x -78.254 _atom_site.Cartn_y -21.515 _atom_site.Cartn_z -49.089 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #