data_6XVO # _model_server_result.job_id TBv-ikiLwR62IdXuZXlfrQ _model_server_result.datetime_utc '2024-10-20 01:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6XVO # _exptl.entry_id 6XVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XVO _cell.length_a 47.007 _cell.length_b 47.007 _cell.length_c 126.19 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 81.418512 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 224 n n C1 C2 PEG sing 225 n n C1 H11 PEG sing 226 n n C1 H12 PEG sing 227 n n O1 HO1 PEG sing 228 n n C2 O2 PEG sing 229 n n C2 H21 PEG sing 230 n n C2 H22 PEG sing 231 n n O2 C3 PEG sing 232 n n C3 C4 PEG sing 233 n n C3 H31 PEG sing 234 n n C3 H32 PEG sing 235 n n C4 O4 PEG sing 236 n n C4 H41 PEG sing 237 n n C4 H42 PEG sing 238 n n O4 HO4 PEG sing 239 n n # _atom_sites.entry_id 6XVO _atom_sites.fract_transf_matrix[1][1] 0.021273 _atom_sites.fract_transf_matrix[1][2] 0.012282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 201 1 PGE PGE . C 3 PEG A 1 202 1 PEG PEG . D 3 PEG A 1 203 2 PEG PEG . E 4 HOH A 1 301 25 HOH HOH . E 4 HOH A 2 302 6 HOH HOH . E 4 HOH A 3 303 1 HOH HOH . E 4 HOH A 4 304 9 HOH HOH . E 4 HOH A 5 305 19 HOH HOH . E 4 HOH A 6 306 13 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 24 HOH HOH . E 4 HOH A 9 309 2 HOH HOH . E 4 HOH A 10 310 3 HOH HOH . E 4 HOH A 11 311 18 HOH HOH . E 4 HOH A 12 312 15 HOH HOH . E 4 HOH A 13 313 26 HOH HOH . E 4 HOH A 14 314 21 HOH HOH . E 4 HOH A 15 315 14 HOH HOH . E 4 HOH A 16 316 5 HOH HOH . E 4 HOH A 17 317 4 HOH HOH . E 4 HOH A 18 318 8 HOH HOH . E 4 HOH A 19 319 22 HOH HOH . E 4 HOH A 20 320 23 HOH HOH . E 4 HOH A 21 321 10 HOH HOH . E 4 HOH A 22 322 16 HOH HOH . E 4 HOH A 23 323 27 HOH HOH . E 4 HOH A 24 324 17 HOH HOH . E 4 HOH A 25 325 11 HOH HOH . E 4 HOH A 26 326 20 HOH HOH . E 4 HOH A 27 327 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 41.233 59.636 1.285 0.91 117.2 ? C1 PEG 203 A 1 HETATM 2 O O1 PEG . . . D 3 40.497 60.517 2.089 0.91 92.27 ? O1 PEG 203 A 1 HETATM 3 C C2 PEG . . . D 3 42.7 60.056 1.287 0.91 75.01 ? C2 PEG 203 A 1 HETATM 4 O O2 PEG . . . D 3 43.486 59.067 1.895 0.91 59.24 ? O2 PEG 203 A 1 HETATM 5 C C3 PEG . . . D 3 44.76 58.954 1.315 0.91 85.18 ? C3 PEG 203 A 1 HETATM 6 C C4 PEG . . . D 3 45.748 58.224 2.228 0.91 84.51 ? C4 PEG 203 A 1 HETATM 7 O O4 PEG . . . D 3 45.11 57.73 3.373 0.91 92.31 ? O4 PEG 203 A 1 HETATM 8 H H11 PEG . . . D 3 40.89 59.663 0.378 0.91 140.7 ? H11 PEG 203 A 1 HETATM 9 H H12 PEG . . . D 3 41.153 58.735 1.634 0.91 140.7 ? H12 PEG 203 A 1 HETATM 10 H HO1 PEG . . . D 3 39.673 60.464 1.892 0.91 110.78 ? HO1 PEG 203 A 1 HETATM 11 H H21 PEG . . . D 3 42.795 60.887 1.778 0.91 90.07 ? H21 PEG 203 A 1 HETATM 12 H H22 PEG . . . D 3 42.998 60.185 0.373 0.91 90.07 ? H22 PEG 203 A 1 HETATM 13 H H31 PEG . . . D 3 45.101 59.844 1.133 0.91 102.27 ? H31 PEG 203 A 1 HETATM 14 H H32 PEG . . . D 3 44.682 58.462 0.482 0.91 102.27 ? H32 PEG 203 A 1 HETATM 15 H H41 PEG . . . D 3 46.446 58.842 2.497 0.91 101.46 ? H41 PEG 203 A 1 HETATM 16 H H42 PEG . . . D 3 46.142 57.484 1.741 0.91 101.46 ? H42 PEG 203 A 1 HETATM 17 H HO4 PEG . . . D 3 45.497 57.014 3.621 0.91 110.83 ? HO4 PEG 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #