data_6XVP # _model_server_result.job_id P7rGnrhuC5VZD_TQa0PHLw _model_server_result.datetime_utc '2024-11-23 05:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6XVP # _exptl.entry_id 6XVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.682 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Sampatrilat _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XVP _cell.length_a 108.089 _cell.length_b 108.089 _cell.length_c 112.826 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 56 1_555 A SG CYS 11 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 29 A CYS 79 1_555 A SG CYS 684 A CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 37 A CYS 87 1_555 A SG CYS 644 A CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 92 A CYS 142 1_555 A SG CYS 360 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 183 A CYS 233 1_555 A SG CYS 191 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 570 A CYS 620 1_555 A SG CYS 696 A CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 94 A ASN 144 1_555 D C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 234 A ASN 284 1_555 E C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 274 A ASN 324 1_555 F C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 577 A ASN 627 1_555 G C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A NE2 HIS 533 A HIS 583 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 A NE2 HIS 537 A HIS 587 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 A OE1 GLU 596 A GLU 646 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 A OE2 GLU 596 A GLU 646 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc5 B ZN ZN . A ZN 801 1_555 C O39 D0Z . A D0Z 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? # _chem_comp.formula 'C26 H40 N4 O9 S' _chem_comp.formula_weight 584.682 _chem_comp.id D0Z _chem_comp.mon_nstd_flag . _chem_comp.name Sampatrilat _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 S02 D0Z doub 83 n n C01 S02 D0Z sing 84 n n S02 O03 D0Z doub 85 n n S02 N05 D0Z sing 86 n n N05 C06 D0Z sing 87 n n N11 C10 D0Z sing 88 n n O13 C12 D0Z doub 89 n n C06 C12 D0Z sing 90 n n C06 C07 D0Z sing 91 n n C10 C09 D0Z sing 92 n n C08 C09 D0Z sing 93 n n C08 C07 D0Z sing 94 n n C12 N14 D0Z sing 95 n n N14 C15 D0Z sing 96 n n C15 C16 D0Z sing 97 n n O40 C38 D0Z doub 98 n n C16 C38 D0Z sing 99 n n C16 C17 D0Z sing 100 n n C38 O39 D0Z sing 101 n n C17 C18 D0Z sing 102 n n C18 C19 D0Z sing 103 n n C18 C22 D0Z sing 104 n n C18 C23 D0Z sing 105 n n O24 C23 D0Z doub 106 n n C19 C20 D0Z sing 107 n n C22 C21 D0Z sing 108 n n C20 C21 D0Z sing 109 n n C23 N25 D0Z sing 110 n n N25 C26 D0Z sing 111 n n C26 C35 D0Z sing 112 n n C26 C27 D0Z sing 113 n n O37 C35 D0Z doub 114 n n C35 O36 D0Z sing 115 n n C27 C28 D0Z sing 116 n n C29 C28 D0Z doub 117 n y C29 C30 D0Z sing 118 n y C28 C33 D0Z sing 119 n y C30 C31 D0Z doub 120 n y C33 C32 D0Z doub 121 n y C31 C32 D0Z sing 122 n y C31 O34 D0Z sing 123 n n C01 H011 D0Z sing 124 n n C01 H012 D0Z sing 125 n n C01 H013 D0Z sing 126 n n C06 H061 D0Z sing 127 n n C07 H072 D0Z sing 128 n n C07 H071 D0Z sing 129 n n C08 H081 D0Z sing 130 n n C08 H082 D0Z sing 131 n n C09 H092 D0Z sing 132 n n C09 H091 D0Z sing 133 n n C10 H101 D0Z sing 134 n n C10 H102 D0Z sing 135 n n C15 H152 D0Z sing 136 n n C15 H151 D0Z sing 137 n n C16 H161 D0Z sing 138 n n C17 H172 D0Z sing 139 n n C17 H171 D0Z sing 140 n n C19 H191 D0Z sing 141 n n C19 H192 D0Z sing 142 n n C20 H201 D0Z sing 143 n n C20 H202 D0Z sing 144 n n C21 H212 D0Z sing 145 n n C21 H211 D0Z sing 146 n n C22 H221 D0Z sing 147 n n C22 H222 D0Z sing 148 n n C26 H261 D0Z sing 149 n n C27 H271 D0Z sing 150 n n C27 H272 D0Z sing 151 n n C29 H291 D0Z sing 152 n n C30 H301 D0Z sing 153 n n C32 H321 D0Z sing 154 n n C33 H331 D0Z sing 155 n n N05 H051 D0Z sing 156 n n N11 H111 D0Z sing 157 n n N11 H112 D0Z sing 158 n n N14 H141 D0Z sing 159 n n N25 H251 D0Z sing 160 n n O34 H341 D0Z sing 161 n n O36 H2 D0Z sing 162 n n O39 H3 D0Z sing 163 n n # _atom_sites.entry_id 6XVP _atom_sites.fract_transf_matrix[1][1] 0.009252 _atom_sites.fract_transf_matrix[1][2] 0.005341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 805 ZN ZN . C 3 D0Z A 1 802 901 D0Z SP4 . D 4 NAG A 1 803 902 NAG NAG . E 4 NAG A 1 804 903 NAG NAG . F 4 NAG A 1 805 904 NAG NAG . G 4 NAG A 1 806 905 NAG NAG . H 5 EDO A 1 807 1001 EDO EDO . I 5 EDO A 1 808 1101 EDO EDO . J 5 EDO A 1 809 1201 EDO EDO . K 6 HOH A 1 901 17 HOH HOH . K 6 HOH A 2 902 28 HOH HOH . K 6 HOH A 3 903 4 HOH HOH . K 6 HOH A 4 904 1 HOH HOH . K 6 HOH A 5 905 2 HOH HOH . K 6 HOH A 6 906 20 HOH HOH . K 6 HOH A 7 907 12 HOH HOH . K 6 HOH A 8 908 27 HOH HOH . K 6 HOH A 9 909 3 HOH HOH . K 6 HOH A 10 910 7 HOH HOH . K 6 HOH A 11 911 34 HOH HOH . K 6 HOH A 12 912 5 HOH HOH . K 6 HOH A 13 913 35 HOH HOH . K 6 HOH A 14 914 26 HOH HOH . K 6 HOH A 15 915 8 HOH HOH . K 6 HOH A 16 916 21 HOH HOH . K 6 HOH A 17 917 14 HOH HOH . K 6 HOH A 18 918 37 HOH HOH . K 6 HOH A 19 919 30 HOH HOH . K 6 HOH A 20 920 6 HOH HOH . K 6 HOH A 21 921 32 HOH HOH . K 6 HOH A 22 922 11 HOH HOH . K 6 HOH A 23 923 24 HOH HOH . K 6 HOH A 24 924 18 HOH HOH . K 6 HOH A 25 925 29 HOH HOH . K 6 HOH A 26 926 31 HOH HOH . K 6 HOH A 27 927 10 HOH HOH . K 6 HOH A 28 928 16 HOH HOH . K 6 HOH A 29 929 19 HOH HOH . K 6 HOH A 30 930 9 HOH HOH . K 6 HOH A 31 931 15 HOH HOH . K 6 HOH A 32 932 22 HOH HOH . K 6 HOH A 33 933 13 HOH HOH . K 6 HOH A 34 934 39 HOH HOH . K 6 HOH A 35 935 36 HOH HOH . K 6 HOH A 36 936 23 HOH HOH . K 6 HOH A 37 937 25 HOH HOH . K 6 HOH A 38 938 33 HOH HOH . K 6 HOH A 39 939 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 D0Z . . . C 3 -22.261 41.171 7.004 1 91.28 ? C01 D0Z 802 A 1 HETATM 2 C C06 D0Z . . . C 3 -21.444 43.189 10.552 1 71.59 ? C06 D0Z 802 A 1 HETATM 3 C C07 D0Z . . . C 3 -19.977 43.619 10.84 1 70.09 ? C07 D0Z 802 A 1 HETATM 4 C C08 D0Z . . . C 3 -19.694 43.57 12.36 1 72.06 ? C08 D0Z 802 A 1 HETATM 5 C C09 D0Z . . . C 3 -20.272 42.315 13.039 1 73.91 ? C09 D0Z 802 A 1 HETATM 6 C C10 D0Z . . . C 3 -20.452 42.504 14.549 1 74.92 ? C10 D0Z 802 A 1 HETATM 7 C C12 D0Z . . . C 3 -22.499 44.15 11.185 1 63.71 ? C12 D0Z 802 A 1 HETATM 8 C C15 D0Z . . . C 3 -23.7 45.042 13.234 1 49.47 ? C15 D0Z 802 A 1 HETATM 9 C C16 D0Z . . . C 3 -23.021 46.37 13.658 1 44.66 ? C16 D0Z 802 A 1 HETATM 10 C C17 D0Z . . . C 3 -24.054 47.189 14.477 1 40.36 ? C17 D0Z 802 A 1 HETATM 11 C C18 D0Z . . . C 3 -23.469 48.416 15.235 1 36.71 ? C18 D0Z 802 A 1 HETATM 12 C C19 D0Z . . . C 3 -24.731 49.004 16.203 1 34.87 ? C19 D0Z 802 A 1 HETATM 13 C C20 D0Z . . . C 3 -24.446 50.317 16.404 1 34.8 ? C20 D0Z 802 A 1 HETATM 14 C C21 D0Z . . . C 3 -23.67 50.783 15.073 1 33.53 ? C21 D0Z 802 A 1 HETATM 15 C C22 D0Z . . . C 3 -23.13 49.421 14.385 1 33.65 ? C22 D0Z 802 A 1 HETATM 16 C C23 D0Z . . . C 3 -22.301 48.05 16.146 1 37.22 ? C23 D0Z 802 A 1 HETATM 17 C C26 D0Z . . . C 3 -21.391 46.541 18.03 1 47.4 ? C26 D0Z 802 A 1 HETATM 18 C C27 D0Z . . . C 3 -22.146 46.49 19.378 1 49.22 ? C27 D0Z 802 A 1 HETATM 19 C C28 D0Z . . . C 3 -21.239 46.359 20.621 1 51.61 ? C28 D0Z 802 A 1 HETATM 20 C C29 D0Z . . . C 3 -20.467 47.439 21.028 1 52.87 ? C29 D0Z 802 A 1 HETATM 21 C C30 D0Z . . . C 3 -19.656 47.317 22.147 1 53.13 ? C30 D0Z 802 A 1 HETATM 22 C C31 D0Z . . . C 3 -19.627 46.123 22.851 1 53.42 ? C31 D0Z 802 A 1 HETATM 23 C C32 D0Z . . . C 3 -20.404 45.046 22.445 1 52.94 ? C32 D0Z 802 A 1 HETATM 24 C C33 D0Z . . . C 3 -21.214 45.164 21.325 1 52.06 ? C33 D0Z 802 A 1 HETATM 25 C C35 D0Z . . . C 3 -20.737 45.203 17.684 1 55.26 ? C35 D0Z 802 A 1 HETATM 26 C C38 D0Z . . . C 3 -22.517 47.132 12.444 1 45.25 ? C38 D0Z 802 A 1 HETATM 27 N N05 D0Z . . . C 3 -21.693 43.071 9.121 1 80.52 ? N05 D0Z 802 A 1 HETATM 28 N N11 D0Z . . . C 3 -21.593 41.741 15.026 1 75.29 ? N11 D0Z 802 A 1 HETATM 29 N N14 D0Z . . . C 3 -22.694 44.128 12.656 1 55.9 ? N14 D0Z 802 A 1 HETATM 30 N N25 D0Z . . . C 3 -22.456 46.922 17.082 1 41.06 ? N25 D0Z 802 A 1 HETATM 31 O O03 D0Z . . . C 3 -24.142 42.312 8.58 1 86.57 ? O03 D0Z 802 A 1 HETATM 32 O O04 D0Z . . . C 3 -22.839 40.792 9.643 1 85.7 ? O04 D0Z 802 A 1 HETATM 33 O O13 D0Z . . . C 3 -23.137 44.89 10.508 1 64.45 ? O13 D0Z 802 A 1 HETATM 34 O O24 D0Z . . . C 3 -21.29 48.674 16.119 1 35.22 ? O24 D0Z 802 A 1 HETATM 35 O O34 D0Z . . . C 3 -18.809 46.006 23.979 1 54.64 ? O34 D0Z 802 A 1 HETATM 36 O O36 D0Z . . . C 3 -19.5 45.024 17.89 1 56.39 ? O36 D0Z 802 A 1 HETATM 37 O O37 D0Z . . . C 3 -21.44 44.275 17.202 1 59.6 ? O37 D0Z 802 A 1 HETATM 38 O O39 D0Z . . . C 3 -21.283 47.206 12.232 1 45.07 ? O39 D0Z 802 A 1 HETATM 39 O O40 D0Z . . . C 3 -23.328 47.688 11.654 1 45.56 ? O40 D0Z 802 A 1 HETATM 40 S S02 D0Z . . . C 3 -22.762 41.833 8.616 1 86.71 ? S02 D0Z 802 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #