data_6XVT
#
_model_server_result.job_id            KhDVo-qNjwMWh77gqu-C1w 
_model_server_result.datetime_utc      '2025-07-30 19:45:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xvt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":204}' 
#
_entry.id    6XVT 
#
_exptl.entry_id    6XVT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         60.849 
_cell.angle_beta          84.037 
_cell.angle_gamma         84.005 
_cell.entry_id            6XVT 
_cell.length_a            34.65 
_cell.length_b            44.28 
_cell.length_c            43.16 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XVT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,K,M 1 1 
B,D,G,H,I,J,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ACE 1 G ACE 1 1_555 C N 2L5 2 G 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 C C 2L5 2 G 2L5 2 1_555 C N PRO 3 G PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 C C PRO 5 G PRO 5 1_555 C N 9PR 6 G 9PR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 D C ACE 1 H ACE 1 1_555 D N 2L5 2 H 2L5 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 D C 2L5 2 H 2L5 2 1_555 D N PRO 3 H PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 D C PRO 5 H PRO 5 1_555 D N 9PR 6 H 9PR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 287 n n 
N O2 NO3 sing 288 n n 
N O3 NO3 sing 289 n n 
#
_atom_sites.entry_id                     6XVT 
_atom_sites.fract_transf_matrix[1][1]    0.02886 
_atom_sites.fract_transf_matrix[1][2]    -0.003031 
_atom_sites.fract_transf_matrix[1][3]    -0.001774 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022708 
_atom_sites.fract_transf_matrix[2][3]    -0.012475 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NO3 A 1 201 1 NO3 NO3 . 
F 4 SO4 A 1 202 1 SO4 SO4 . 
G 3 NO3 B 1 201 2 NO3 NO3 . 
H 3 NO3 B 1 202 3 NO3 NO3 . 
I 3 NO3 B 1 203 4 NO3 NO3 . 
J 3 NO3 B 1 204 5 NO3 NO3 . 
K 5 HOH A 1 301 86 HOH HOH . 
K 5 HOH A 2 302 137 HOH HOH . 
K 5 HOH A 3 303 159 HOH HOH . 
K 5 HOH A 4 304 51 HOH HOH . 
K 5 HOH A 5 305 113 HOH HOH . 
K 5 HOH A 6 306 97 HOH HOH . 
K 5 HOH A 7 307 36 HOH HOH . 
K 5 HOH A 8 308 5 HOH HOH . 
K 5 HOH A 9 309 27 HOH HOH . 
K 5 HOH A 10 310 132 HOH HOH . 
K 5 HOH A 11 311 124 HOH HOH . 
K 5 HOH A 12 312 10 HOH HOH . 
K 5 HOH A 13 313 43 HOH HOH . 
K 5 HOH A 14 314 155 HOH HOH . 
K 5 HOH A 15 315 89 HOH HOH . 
K 5 HOH A 16 316 58 HOH HOH . 
K 5 HOH A 17 317 142 HOH HOH . 
K 5 HOH A 18 318 33 HOH HOH . 
K 5 HOH A 19 319 8 HOH HOH . 
K 5 HOH A 20 320 66 HOH HOH . 
K 5 HOH A 21 321 30 HOH HOH . 
K 5 HOH A 22 322 81 HOH HOH . 
K 5 HOH A 23 323 7 HOH HOH . 
K 5 HOH A 24 324 37 HOH HOH . 
K 5 HOH A 25 325 13 HOH HOH . 
K 5 HOH A 26 326 42 HOH HOH . 
K 5 HOH A 27 327 138 HOH HOH . 
K 5 HOH A 28 328 44 HOH HOH . 
K 5 HOH A 29 329 101 HOH HOH . 
K 5 HOH A 30 330 112 HOH HOH . 
K 5 HOH A 31 331 148 HOH HOH . 
K 5 HOH A 32 332 38 HOH HOH . 
K 5 HOH A 33 333 96 HOH HOH . 
K 5 HOH A 34 334 135 HOH HOH . 
K 5 HOH A 35 335 47 HOH HOH . 
K 5 HOH A 36 336 49 HOH HOH . 
K 5 HOH A 37 337 157 HOH HOH . 
K 5 HOH A 38 338 64 HOH HOH . 
K 5 HOH A 39 339 78 HOH HOH . 
K 5 HOH A 40 340 151 HOH HOH . 
K 5 HOH A 41 341 4 HOH HOH . 
K 5 HOH A 42 342 152 HOH HOH . 
K 5 HOH A 43 343 16 HOH HOH . 
K 5 HOH A 44 344 55 HOH HOH . 
K 5 HOH A 45 345 48 HOH HOH . 
K 5 HOH A 46 346 158 HOH HOH . 
K 5 HOH A 47 347 156 HOH HOH . 
K 5 HOH A 48 348 19 HOH HOH . 
K 5 HOH A 49 349 23 HOH HOH . 
K 5 HOH A 50 350 32 HOH HOH . 
K 5 HOH A 51 351 145 HOH HOH . 
K 5 HOH A 52 352 103 HOH HOH . 
K 5 HOH A 53 353 26 HOH HOH . 
K 5 HOH A 54 354 59 HOH HOH . 
K 5 HOH A 55 355 25 HOH HOH . 
K 5 HOH A 56 356 92 HOH HOH . 
K 5 HOH A 57 357 144 HOH HOH . 
K 5 HOH A 58 358 41 HOH HOH . 
K 5 HOH A 59 359 153 HOH HOH . 
K 5 HOH A 60 360 93 HOH HOH . 
K 5 HOH A 61 361 68 HOH HOH . 
K 5 HOH A 62 362 116 HOH HOH . 
K 5 HOH A 63 363 17 HOH HOH . 
K 5 HOH A 64 364 99 HOH HOH . 
K 5 HOH A 65 365 129 HOH HOH . 
K 5 HOH A 66 366 126 HOH HOH . 
K 5 HOH A 67 367 74 HOH HOH . 
K 5 HOH A 68 368 87 HOH HOH . 
K 5 HOH A 69 369 115 HOH HOH . 
K 5 HOH A 70 370 120 HOH HOH . 
K 5 HOH A 71 371 108 HOH HOH . 
K 5 HOH A 72 372 91 HOH HOH . 
K 5 HOH A 73 373 141 HOH HOH . 
K 5 HOH A 74 374 109 HOH HOH . 
K 5 HOH A 75 375 150 HOH HOH . 
K 5 HOH A 76 376 79 HOH HOH . 
K 5 HOH A 77 377 147 HOH HOH . 
K 5 HOH A 78 378 90 HOH HOH . 
K 5 HOH A 79 379 131 HOH HOH . 
L 5 HOH B 1 301 119 HOH HOH . 
L 5 HOH B 2 302 94 HOH HOH . 
L 5 HOH B 3 303 11 HOH HOH . 
L 5 HOH B 4 304 88 HOH HOH . 
L 5 HOH B 5 305 139 HOH HOH . 
L 5 HOH B 6 306 128 HOH HOH . 
L 5 HOH B 7 307 52 HOH HOH . 
L 5 HOH B 8 308 12 HOH HOH . 
L 5 HOH B 9 309 65 HOH HOH . 
L 5 HOH B 10 310 134 HOH HOH . 
L 5 HOH B 11 311 140 HOH HOH . 
L 5 HOH B 12 312 39 HOH HOH . 
L 5 HOH B 13 313 60 HOH HOH . 
L 5 HOH B 14 314 118 HOH HOH . 
L 5 HOH B 15 315 100 HOH HOH . 
L 5 HOH B 16 316 102 HOH HOH . 
L 5 HOH B 17 317 18 HOH HOH . 
L 5 HOH B 18 318 40 HOH HOH . 
L 5 HOH B 19 319 107 HOH HOH . 
L 5 HOH B 20 320 56 HOH HOH . 
L 5 HOH B 21 321 84 HOH HOH . 
L 5 HOH B 22 322 3 HOH HOH . 
L 5 HOH B 23 323 121 HOH HOH . 
L 5 HOH B 24 324 22 HOH HOH . 
L 5 HOH B 25 325 54 HOH HOH . 
L 5 HOH B 26 326 130 HOH HOH . 
L 5 HOH B 27 327 28 HOH HOH . 
L 5 HOH B 28 328 85 HOH HOH . 
L 5 HOH B 29 329 6 HOH HOH . 
L 5 HOH B 30 330 71 HOH HOH . 
L 5 HOH B 31 331 80 HOH HOH . 
L 5 HOH B 32 332 9 HOH HOH . 
L 5 HOH B 33 333 62 HOH HOH . 
L 5 HOH B 34 334 35 HOH HOH . 
L 5 HOH B 35 335 24 HOH HOH . 
L 5 HOH B 36 336 57 HOH HOH . 
L 5 HOH B 37 337 20 HOH HOH . 
L 5 HOH B 38 338 21 HOH HOH . 
L 5 HOH B 39 339 14 HOH HOH . 
L 5 HOH B 40 340 63 HOH HOH . 
L 5 HOH B 41 341 69 HOH HOH . 
L 5 HOH B 42 342 95 HOH HOH . 
L 5 HOH B 43 343 149 HOH HOH . 
L 5 HOH B 44 344 15 HOH HOH . 
L 5 HOH B 45 345 34 HOH HOH . 
L 5 HOH B 46 346 50 HOH HOH . 
L 5 HOH B 47 347 83 HOH HOH . 
L 5 HOH B 48 348 46 HOH HOH . 
L 5 HOH B 49 349 104 HOH HOH . 
L 5 HOH B 50 350 72 HOH HOH . 
L 5 HOH B 51 351 77 HOH HOH . 
L 5 HOH B 52 352 143 HOH HOH . 
L 5 HOH B 53 353 114 HOH HOH . 
L 5 HOH B 54 354 146 HOH HOH . 
L 5 HOH B 55 355 98 HOH HOH . 
L 5 HOH B 56 356 76 HOH HOH . 
L 5 HOH B 57 357 105 HOH HOH . 
L 5 HOH B 58 358 61 HOH HOH . 
M 5 HOH G 1 101 123 HOH HOH . 
N 5 HOH H 1 101 154 HOH HOH . 
N 5 HOH H 2 102 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . A . J 3 -34.88 -0.772 5.366 0.61 34.71 ? N NO3 204 B 1 
HETATM 2 N N NO3 . B . J 3 -34.971 0.232 6.258 0.39 34.11 ? N NO3 204 B 1 
HETATM 3 O O1 NO3 . A . J 3 -34.66 -0.241 4.239 0.61 29.4 ? O1 NO3 204 B 1 
HETATM 4 O O1 NO3 . B . J 3 -35.991 0.128 5.515 0.39 37.43 ? O1 NO3 204 B 1 
HETATM 5 O O2 NO3 . A . J 3 -35.711 -0.244 6.162 0.61 36.51 ? O2 NO3 204 B 1 
HETATM 6 O O2 NO3 . B . J 3 -34.833 1.245 7.002 0.39 32.07 ? O2 NO3 204 B 1 
HETATM 7 O O3 NO3 . A . J 3 -34.27 -1.831 5.698 0.61 28.47 ? O3 NO3 204 B 1 
HETATM 8 O O3 NO3 . B . J 3 -34.091 -0.677 6.258 0.39 28.29 ? O3 NO3 204 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#