data_6XWB # _model_server_result.job_id wCDNvN-6jG2V9_RvQLQK4A _model_server_result.datetime_utc '2024-11-09 02:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":516}' # _entry.id 6XWB # _exptl.entry_id 6XWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.218 _cell.angle_gamma 90 _cell.entry_id 6XWB _cell.length_a 67.77 _cell.length_b 98.01 _cell.length_c 117.258 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,BA 1 1,2 B,S,T,U,V,W,X,Y,Z,AA,CA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 187 A LYS 178 1_555 P C4A PLP . A PLP 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B NZ LYS 187 B LYS 178 1_555 AA C4A PLP . B PLP 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A O TYR 67 A TYR 58 1_555 Q NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A OD2 ASP 68 A ASP 59 1_555 Q NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc3 A OG SER 90 A SER 81 1_555 Q NA NA . A NA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc4 A OG1 THR 236 A THR 227 1_555 R NA NA . A NA 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc5 A O PRO 237 A PRO 228 1_555 R NA NA . A NA 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc6 R NA NA . A NA 516 1_555 BA O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XWB _atom_sites.fract_transf_matrix[1][1] 0.014756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 501 501 EDO EDO . D 2 EDO A 1 502 601 EDO EDO . E 2 EDO A 1 503 701 EDO EDO . F 2 EDO A 1 504 801 EDO EDO . G 2 EDO A 1 505 1001 EDO EDO . H 2 EDO A 1 506 1101 EDO EDO . I 2 EDO A 1 507 1201 EDO EDO . J 2 EDO A 1 508 1301 EDO EDO . K 2 EDO A 1 509 1401 EDO EDO . L 2 EDO A 1 510 1501 EDO EDO . M 2 EDO A 1 511 1601 EDO EDO . N 2 EDO A 1 512 1701 EDO EDO . O 2 EDO A 1 513 1801 EDO EDO . P 3 PLP A 1 514 1901 PLP PLP . Q 4 NA A 1 515 1 NA NA . R 4 NA A 1 516 2 NA NA . S 2 EDO B 1 601 601 EDO EDO . T 2 EDO B 1 602 701 EDO EDO . U 2 EDO B 1 603 901 EDO EDO . V 2 EDO B 1 604 1001 EDO EDO . W 2 EDO B 1 605 1101 EDO EDO . X 2 EDO B 1 606 1201 EDO EDO . Y 2 EDO B 1 607 1401 EDO EDO . Z 2 EDO B 1 608 1501 EDO EDO . AA 3 PLP B 1 609 1601 PLP PLP . BA 5 HOH A 1 601 177 HOH HOH . BA 5 HOH A 2 602 174 HOH HOH . BA 5 HOH A 3 603 135 HOH HOH . BA 5 HOH A 4 604 172 HOH HOH . BA 5 HOH A 5 605 5 HOH HOH . BA 5 HOH A 6 606 182 HOH HOH . BA 5 HOH A 7 607 19 HOH HOH . BA 5 HOH A 8 608 195 HOH HOH . BA 5 HOH A 9 609 110 HOH HOH . BA 5 HOH A 10 610 8 HOH HOH . BA 5 HOH A 11 611 22 HOH HOH . BA 5 HOH A 12 612 115 HOH HOH . BA 5 HOH A 13 613 173 HOH HOH . BA 5 HOH A 14 614 1 HOH HOH . BA 5 HOH A 15 615 136 HOH HOH . BA 5 HOH A 16 616 170 HOH HOH . BA 5 HOH A 17 617 20 HOH HOH . BA 5 HOH A 18 618 2 HOH HOH . BA 5 HOH A 19 619 171 HOH HOH . BA 5 HOH A 20 620 107 HOH HOH . BA 5 HOH A 21 621 148 HOH HOH . BA 5 HOH A 22 622 188 HOH HOH . BA 5 HOH A 23 623 145 HOH HOH . BA 5 HOH A 24 624 33 HOH HOH . BA 5 HOH A 25 625 146 HOH HOH . BA 5 HOH A 26 626 160 HOH HOH . BA 5 HOH A 27 627 117 HOH HOH . BA 5 HOH A 28 628 164 HOH HOH . BA 5 HOH A 29 629 35 HOH HOH . BA 5 HOH A 30 630 36 HOH HOH . BA 5 HOH A 31 631 13 HOH HOH . BA 5 HOH A 32 632 176 HOH HOH . BA 5 HOH A 33 633 154 HOH HOH . BA 5 HOH A 34 634 93 HOH HOH . BA 5 HOH A 35 635 119 HOH HOH . BA 5 HOH A 36 636 168 HOH HOH . BA 5 HOH A 37 637 34 HOH HOH . BA 5 HOH A 38 638 106 HOH HOH . BA 5 HOH A 39 639 27 HOH HOH . BA 5 HOH A 40 640 149 HOH HOH . BA 5 HOH A 41 641 180 HOH HOH . BA 5 HOH A 42 642 130 HOH HOH . BA 5 HOH A 43 643 166 HOH HOH . BA 5 HOH A 44 644 3 HOH HOH . BA 5 HOH A 45 645 133 HOH HOH . BA 5 HOH A 46 646 23 HOH HOH . BA 5 HOH A 47 647 9 HOH HOH . BA 5 HOH A 48 648 111 HOH HOH . BA 5 HOH A 49 649 159 HOH HOH . BA 5 HOH A 50 650 184 HOH HOH . BA 5 HOH A 51 651 134 HOH HOH . BA 5 HOH A 52 652 114 HOH HOH . BA 5 HOH A 53 653 30 HOH HOH . BA 5 HOH A 54 654 103 HOH HOH . BA 5 HOH A 55 655 31 HOH HOH . BA 5 HOH A 56 656 150 HOH HOH . BA 5 HOH A 57 657 24 HOH HOH . BA 5 HOH A 58 658 151 HOH HOH . BA 5 HOH A 59 659 88 HOH HOH . BA 5 HOH A 60 660 28 HOH HOH . BA 5 HOH A 61 661 112 HOH HOH . BA 5 HOH A 62 662 144 HOH HOH . BA 5 HOH A 63 663 4 HOH HOH . BA 5 HOH A 64 664 113 HOH HOH . BA 5 HOH A 65 665 175 HOH HOH . BA 5 HOH A 66 666 152 HOH HOH . BA 5 HOH A 67 667 26 HOH HOH . BA 5 HOH A 68 668 147 HOH HOH . BA 5 HOH A 69 669 29 HOH HOH . BA 5 HOH A 70 670 102 HOH HOH . BA 5 HOH A 71 671 137 HOH HOH . BA 5 HOH A 72 672 54 HOH HOH . BA 5 HOH A 73 673 138 HOH HOH . BA 5 HOH A 74 674 157 HOH HOH . BA 5 HOH A 75 675 185 HOH HOH . BA 5 HOH A 76 676 183 HOH HOH . BA 5 HOH A 77 677 25 HOH HOH . BA 5 HOH A 78 678 189 HOH HOH . BA 5 HOH A 79 679 187 HOH HOH . BA 5 HOH A 80 680 156 HOH HOH . BA 5 HOH A 81 681 186 HOH HOH . BA 5 HOH A 82 682 158 HOH HOH . BA 5 HOH A 83 683 11 HOH HOH . BA 5 HOH A 84 684 181 HOH HOH . BA 5 HOH A 85 685 169 HOH HOH . BA 5 HOH A 86 686 153 HOH HOH . BA 5 HOH A 87 687 118 HOH HOH . BA 5 HOH A 88 688 50 HOH HOH . CA 5 HOH B 1 701 39 HOH HOH . CA 5 HOH B 2 702 143 HOH HOH . CA 5 HOH B 3 703 179 HOH HOH . CA 5 HOH B 4 704 132 HOH HOH . CA 5 HOH B 5 705 129 HOH HOH . CA 5 HOH B 6 706 40 HOH HOH . CA 5 HOH B 7 707 142 HOH HOH . CA 5 HOH B 8 708 197 HOH HOH . CA 5 HOH B 9 709 66 HOH HOH . CA 5 HOH B 10 710 49 HOH HOH . CA 5 HOH B 11 711 68 HOH HOH . CA 5 HOH B 12 712 194 HOH HOH . CA 5 HOH B 13 713 16 HOH HOH . CA 5 HOH B 14 714 65 HOH HOH . CA 5 HOH B 15 715 38 HOH HOH . CA 5 HOH B 16 716 80 HOH HOH . CA 5 HOH B 17 717 53 HOH HOH . CA 5 HOH B 18 718 165 HOH HOH . CA 5 HOH B 19 719 162 HOH HOH . CA 5 HOH B 20 720 108 HOH HOH . CA 5 HOH B 21 721 59 HOH HOH . CA 5 HOH B 22 722 75 HOH HOH . CA 5 HOH B 23 723 57 HOH HOH . CA 5 HOH B 24 724 121 HOH HOH . CA 5 HOH B 25 725 72 HOH HOH . CA 5 HOH B 26 726 141 HOH HOH . CA 5 HOH B 27 727 131 HOH HOH . CA 5 HOH B 28 728 55 HOH HOH . CA 5 HOH B 29 729 46 HOH HOH . CA 5 HOH B 30 730 70 HOH HOH . CA 5 HOH B 31 731 44 HOH HOH . CA 5 HOH B 32 732 74 HOH HOH . CA 5 HOH B 33 733 77 HOH HOH . CA 5 HOH B 34 734 41 HOH HOH . CA 5 HOH B 35 735 71 HOH HOH . CA 5 HOH B 36 736 140 HOH HOH . CA 5 HOH B 37 737 87 HOH HOH . CA 5 HOH B 38 738 67 HOH HOH . CA 5 HOH B 39 739 193 HOH HOH . CA 5 HOH B 40 740 124 HOH HOH . CA 5 HOH B 41 741 56 HOH HOH . CA 5 HOH B 42 742 86 HOH HOH . CA 5 HOH B 43 743 178 HOH HOH . CA 5 HOH B 44 744 63 HOH HOH . CA 5 HOH B 45 745 123 HOH HOH . CA 5 HOH B 46 746 82 HOH HOH . CA 5 HOH B 47 747 122 HOH HOH . CA 5 HOH B 48 748 37 HOH HOH . CA 5 HOH B 49 749 167 HOH HOH . CA 5 HOH B 50 750 127 HOH HOH . CA 5 HOH B 51 751 196 HOH HOH . CA 5 HOH B 52 752 58 HOH HOH . CA 5 HOH B 53 753 64 HOH HOH . CA 5 HOH B 54 754 190 HOH HOH . CA 5 HOH B 55 755 95 HOH HOH . CA 5 HOH B 56 756 100 HOH HOH . CA 5 HOH B 57 757 128 HOH HOH . CA 5 HOH B 58 758 84 HOH HOH . CA 5 HOH B 59 759 96 HOH HOH . CA 5 HOH B 60 760 45 HOH HOH . CA 5 HOH B 61 761 76 HOH HOH . CA 5 HOH B 62 762 104 HOH HOH . CA 5 HOH B 63 763 192 HOH HOH . CA 5 HOH B 64 764 89 HOH HOH . CA 5 HOH B 65 765 139 HOH HOH . CA 5 HOH B 66 766 78 HOH HOH . CA 5 HOH B 67 767 43 HOH HOH . CA 5 HOH B 68 768 42 HOH HOH . CA 5 HOH B 69 769 83 HOH HOH . CA 5 HOH B 70 770 161 HOH HOH . CA 5 HOH B 71 771 191 HOH HOH . CA 5 HOH B 72 772 155 HOH HOH . CA 5 HOH B 73 773 73 HOH HOH . CA 5 HOH B 74 774 47 HOH HOH . CA 5 HOH B 75 775 60 HOH HOH . CA 5 HOH B 76 776 61 HOH HOH . CA 5 HOH B 77 777 163 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.818 _atom_site.Cartn_y 11.182 _atom_site.Cartn_z 12.489 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 516 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #