data_6XWF # _model_server_result.job_id Q0eRyKgB4q03ewUR3-7gPw _model_server_result.datetime_utc '2025-01-10 20:13:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6XWF # _exptl.entry_id 6XWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XWF _cell.length_a 68.94 _cell.length_b 68.94 _cell.length_c 166.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -34.47 59.703791 27.818333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6XWF _atom_sites.fract_transf_matrix[1][1] 0.014505 _atom_sites.fract_transf_matrix[1][2] 0.008375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 301 301 MPD MPD . C 3 CL A 1 302 401 CL CL . D 4 HOH A 1 401 57 HOH HOH . D 4 HOH A 2 402 41 HOH HOH . D 4 HOH A 3 403 115 HOH HOH . D 4 HOH A 4 404 8 HOH HOH . D 4 HOH A 5 405 83 HOH HOH . D 4 HOH A 6 406 71 HOH HOH . D 4 HOH A 7 407 29 HOH HOH . D 4 HOH A 8 408 16 HOH HOH . D 4 HOH A 9 409 110 HOH HOH . D 4 HOH A 10 410 137 HOH HOH . D 4 HOH A 11 411 79 HOH HOH . D 4 HOH A 12 412 73 HOH HOH . D 4 HOH A 13 413 108 HOH HOH . D 4 HOH A 14 414 128 HOH HOH . D 4 HOH A 15 415 65 HOH HOH . D 4 HOH A 16 416 27 HOH HOH . D 4 HOH A 17 417 104 HOH HOH . D 4 HOH A 18 418 130 HOH HOH . D 4 HOH A 19 419 35 HOH HOH . D 4 HOH A 20 420 133 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 14 HOH HOH . D 4 HOH A 23 423 17 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 81 HOH HOH . D 4 HOH A 26 426 94 HOH HOH . D 4 HOH A 27 427 87 HOH HOH . D 4 HOH A 28 428 23 HOH HOH . D 4 HOH A 29 429 98 HOH HOH . D 4 HOH A 30 430 61 HOH HOH . D 4 HOH A 31 431 105 HOH HOH . D 4 HOH A 32 432 11 HOH HOH . D 4 HOH A 33 433 7 HOH HOH . D 4 HOH A 34 434 111 HOH HOH . D 4 HOH A 35 435 121 HOH HOH . D 4 HOH A 36 436 42 HOH HOH . D 4 HOH A 37 437 10 HOH HOH . D 4 HOH A 38 438 90 HOH HOH . D 4 HOH A 39 439 112 HOH HOH . D 4 HOH A 40 440 31 HOH HOH . D 4 HOH A 41 441 38 HOH HOH . D 4 HOH A 42 442 89 HOH HOH . D 4 HOH A 43 443 1 HOH HOH . D 4 HOH A 44 444 59 HOH HOH . D 4 HOH A 45 445 103 HOH HOH . D 4 HOH A 46 446 68 HOH HOH . D 4 HOH A 47 447 3 HOH HOH . D 4 HOH A 48 448 12 HOH HOH . D 4 HOH A 49 449 51 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 2 HOH HOH . D 4 HOH A 52 452 30 HOH HOH . D 4 HOH A 53 453 125 HOH HOH . D 4 HOH A 54 454 48 HOH HOH . D 4 HOH A 55 455 132 HOH HOH . D 4 HOH A 56 456 13 HOH HOH . D 4 HOH A 57 457 15 HOH HOH . D 4 HOH A 58 458 34 HOH HOH . D 4 HOH A 59 459 102 HOH HOH . D 4 HOH A 60 460 4 HOH HOH . D 4 HOH A 61 461 135 HOH HOH . D 4 HOH A 62 462 39 HOH HOH . D 4 HOH A 63 463 36 HOH HOH . D 4 HOH A 64 464 18 HOH HOH . D 4 HOH A 65 465 5 HOH HOH . D 4 HOH A 66 466 53 HOH HOH . D 4 HOH A 67 467 21 HOH HOH . D 4 HOH A 68 468 63 HOH HOH . D 4 HOH A 69 469 19 HOH HOH . D 4 HOH A 70 470 95 HOH HOH . D 4 HOH A 71 471 70 HOH HOH . D 4 HOH A 72 472 69 HOH HOH . D 4 HOH A 73 473 119 HOH HOH . D 4 HOH A 74 474 43 HOH HOH . D 4 HOH A 75 475 52 HOH HOH . D 4 HOH A 76 476 120 HOH HOH . D 4 HOH A 77 477 20 HOH HOH . D 4 HOH A 78 478 40 HOH HOH . D 4 HOH A 79 479 100 HOH HOH . D 4 HOH A 80 480 33 HOH HOH . D 4 HOH A 81 481 118 HOH HOH . D 4 HOH A 82 482 44 HOH HOH . D 4 HOH A 83 483 55 HOH HOH . D 4 HOH A 84 484 54 HOH HOH . D 4 HOH A 85 485 85 HOH HOH . D 4 HOH A 86 486 26 HOH HOH . D 4 HOH A 87 487 37 HOH HOH . D 4 HOH A 88 488 86 HOH HOH . D 4 HOH A 89 489 113 HOH HOH . D 4 HOH A 90 490 114 HOH HOH . D 4 HOH A 91 491 6 HOH HOH . D 4 HOH A 92 492 126 HOH HOH . D 4 HOH A 93 493 46 HOH HOH . D 4 HOH A 94 494 74 HOH HOH . D 4 HOH A 95 495 75 HOH HOH . D 4 HOH A 96 496 82 HOH HOH . D 4 HOH A 97 497 91 HOH HOH . D 4 HOH A 98 498 139 HOH HOH . D 4 HOH A 99 499 136 HOH HOH . D 4 HOH A 100 500 99 HOH HOH . D 4 HOH A 101 501 78 HOH HOH . D 4 HOH A 102 502 62 HOH HOH . D 4 HOH A 103 503 66 HOH HOH . D 4 HOH A 104 504 80 HOH HOH . D 4 HOH A 105 505 67 HOH HOH . D 4 HOH A 106 506 25 HOH HOH . D 4 HOH A 107 507 106 HOH HOH . D 4 HOH A 108 508 49 HOH HOH . D 4 HOH A 109 509 129 HOH HOH . D 4 HOH A 110 510 127 HOH HOH . D 4 HOH A 111 511 47 HOH HOH . D 4 HOH A 112 512 92 HOH HOH . D 4 HOH A 113 513 9 HOH HOH . D 4 HOH A 114 514 58 HOH HOH . D 4 HOH A 115 515 84 HOH HOH . D 4 HOH A 116 516 97 HOH HOH . D 4 HOH A 117 517 141 HOH HOH . D 4 HOH A 118 518 93 HOH HOH . D 4 HOH A 119 519 28 HOH HOH . D 4 HOH A 120 520 117 HOH HOH . D 4 HOH A 121 521 109 HOH HOH . D 4 HOH A 122 522 72 HOH HOH . D 4 HOH A 123 523 134 HOH HOH . D 4 HOH A 124 524 56 HOH HOH . D 4 HOH A 125 525 64 HOH HOH . D 4 HOH A 126 526 142 HOH HOH . D 4 HOH A 127 527 131 HOH HOH . D 4 HOH A 128 528 88 HOH HOH . D 4 HOH A 129 529 124 HOH HOH . D 4 HOH A 130 530 60 HOH HOH . D 4 HOH A 131 531 122 HOH HOH . D 4 HOH A 132 532 77 HOH HOH . D 4 HOH A 133 533 107 HOH HOH . D 4 HOH A 134 534 45 HOH HOH . D 4 HOH A 135 535 96 HOH HOH . D 4 HOH A 136 536 76 HOH HOH . D 4 HOH A 137 537 138 HOH HOH . D 4 HOH A 138 538 140 HOH HOH . D 4 HOH A 139 539 143 HOH HOH . D 4 HOH A 140 540 32 HOH HOH . D 4 HOH A 141 541 101 HOH HOH . D 4 HOH A 142 542 123 HOH HOH . D 4 HOH A 143 543 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 -17.444 35.706 0.345 1 32.87 ? C1 MPD 301 A 1 HETATM 2 C C2 MPD . . . B 2 -17.382 36.883 -0.624 1 32.93 ? C2 MPD 301 A 1 HETATM 3 O O2 MPD . . . B 2 -16.448 37.853 -0.094 1 30.96 ? O2 MPD 301 A 1 HETATM 4 C CM MPD . . . B 2 -16.867 36.412 -1.979 1 33.25 ? CM MPD 301 A 1 HETATM 5 C C3 MPD . . . B 2 -18.762 37.511 -0.8 1 35.58 ? C3 MPD 301 A 1 HETATM 6 C C4 MPD . . . B 2 -18.811 39.018 -0.571 1 40 ? C4 MPD 301 A 1 HETATM 7 O O4 MPD . . . B 2 -17.855 39.681 -1.361 1 40.08 ? O4 MPD 301 A 1 HETATM 8 C C5 MPD . . . B 2 -20.187 39.557 -0.948 1 38.09 ? C5 MPD 301 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #