data_6XWM # _model_server_result.job_id 4ZDAIoghqvM0IFjjKs8YhQ _model_server_result.datetime_utc '2024-11-04 22:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6XWM # _exptl.entry_id 6XWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 65.38 _cell.angle_beta 89.77 _cell.angle_gamma 64.56 _cell.entry_id 6XWM _cell.length_a 77.848 _cell.length_b 83.985 _cell.length_c 86.939 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc11 C O PHE . A PHE 601 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc13 B O ALA 22 B ALA 22 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc14 B O VAL 23 B VAL 23 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc16 B O THR 254 B THR 254 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc17 B OG1 THR 254 B THR 254 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc19 B O ALA 351 B ALA 351 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc21 B OG SER 355 B SER 355 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc22 F OXT PHE . B PHE 601 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 224 n n N H PHE sing 225 n n N H2 PHE sing 226 n n CA C PHE sing 227 n n CA CB PHE sing 228 n n CA HA PHE sing 229 n n C O PHE doub 230 n n C OXT PHE sing 231 n n CB CG PHE sing 232 n n CB HB2 PHE sing 233 n n CB HB3 PHE sing 234 n n CG CD1 PHE doub 235 n y CG CD2 PHE sing 236 n y CD1 CE1 PHE sing 237 n y CD1 HD1 PHE sing 238 n n CD2 CE2 PHE doub 239 n y CD2 HD2 PHE sing 240 n n CE1 CZ PHE doub 241 n y CE1 HE1 PHE sing 242 n n CE2 CZ PHE sing 243 n y CE2 HE2 PHE sing 244 n n CZ HZ PHE sing 245 n n OXT HXT PHE sing 246 n n # _atom_sites.entry_id 6XWM _atom_sites.fract_transf_matrix[1][1] 0.012846 _atom_sites.fract_transf_matrix[1][2] -0.006112 _atom_sites.fract_transf_matrix[1][3] 0.003102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013186 _atom_sites.fract_transf_matrix[2][3] -0.006819 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PHE A 1 601 601 PHE PHE . D 3 NA A 1 602 751 NA NA . E 3 NA A 1 603 752 NA NA . F 2 PHE B 1 601 601 PHE PHE . G 3 NA B 1 602 751 NA NA . H 3 NA B 1 603 752 NA NA . I 4 HOH A 1 701 19 HOH HOH . I 4 HOH A 2 702 18 HOH HOH . I 4 HOH A 3 703 9 HOH HOH . I 4 HOH A 4 704 2 HOH HOH . I 4 HOH A 5 705 14 HOH HOH . I 4 HOH A 6 706 6 HOH HOH . I 4 HOH A 7 707 3 HOH HOH . I 4 HOH A 8 708 4 HOH HOH . I 4 HOH A 9 709 11 HOH HOH . I 4 HOH A 10 710 1 HOH HOH . I 4 HOH A 11 711 13 HOH HOH . J 4 HOH B 1 701 17 HOH HOH . J 4 HOH B 2 702 5 HOH HOH . J 4 HOH B 3 703 22 HOH HOH . J 4 HOH B 4 704 21 HOH HOH . J 4 HOH B 5 705 16 HOH HOH . J 4 HOH B 6 706 8 HOH HOH . J 4 HOH B 7 707 10 HOH HOH . J 4 HOH B 8 708 23 HOH HOH . J 4 HOH B 9 709 15 HOH HOH . J 4 HOH B 10 710 20 HOH HOH . J 4 HOH B 11 711 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . F 2 41.16 8.777 -126.728 1 66.5 ? N PHE 601 B 1 HETATM 2 C CA PHE . . . F 2 40.331 9.626 -127.576 1 62.79 ? CA PHE 601 B 1 HETATM 3 C C PHE . . . F 2 39.49 10.588 -126.744 1 59.89 ? C PHE 601 B 1 HETATM 4 O O PHE . . . F 2 38.688 11.353 -127.278 1 61.04 ? O PHE 601 B 1 HETATM 5 C CB PHE . . . F 2 39.428 8.774 -128.467 1 65.3 ? CB PHE 601 B 1 HETATM 6 C CG PHE . . . F 2 40.178 7.811 -129.34 1 69.51 ? CG PHE 601 B 1 HETATM 7 C CD1 PHE . . . F 2 40.856 8.261 -130.461 1 65.32 ? CD1 PHE 601 B 1 HETATM 8 C CD2 PHE . . . F 2 40.206 6.459 -129.039 1 63.79 ? CD2 PHE 601 B 1 HETATM 9 C CE1 PHE . . . F 2 41.546 7.381 -131.267 1 63.1 ? CE1 PHE 601 B 1 HETATM 10 C CE2 PHE . . . F 2 40.897 5.573 -129.842 1 62 ? CE2 PHE 601 B 1 HETATM 11 C CZ PHE . . . F 2 41.57 6.033 -130.956 1 69.72 ? CZ PHE 601 B 1 HETATM 12 O OXT PHE . . . F 2 39.599 10.629 -125.519 1 63.18 ? OXT PHE 601 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #