data_6XWZ
#
_model_server_result.job_id            Ny7EeEvXX5KxKPLycTQiXA 
_model_server_result.datetime_utc      '2024-11-24 02:12:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xwz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6XWZ 
#
_exptl.entry_id    6XWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              157.072 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            benzeneselenol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.259 
_cell.angle_gamma         90 
_cell.entry_id            6XWZ 
_cell.length_a            42.336 
_cell.length_b            41.311 
_cell.length_c            72.457 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 AAA HIS 94 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc2 A NE2 HIS 96 AAA HIS 96 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc3 A ND1 HIS 119 AAA HIS 119 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C6 H6 Se' 
_chem_comp.formula_weight    157.072 
_chem_comp.id                GXE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              benzeneselenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GXE doub 142 n y 
C1 C GXE sing 143 n y 
C2 C3 GXE sing 144 n y 
SE C GXE sing 145 n n 
C C5 GXE doub 146 n y 
C3 C4 GXE doub 147 n y 
C5 C4 GXE sing 148 n y 
SE H1 GXE sing 149 n n 
C1 H2 GXE sing 150 n n 
C2 H3 GXE sing 151 n n 
C3 H4 GXE sing 152 n n 
C4 H5 GXE sing 153 n n 
C5 H6 GXE sing 154 n n 
#
_atom_sites.entry_id                     6XWZ 
_atom_sites.fract_transf_matrix[1][1]    0.023621 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024207 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN AAA 1 301 1 ZN ZN . 
C 3 GOL AAA 1 302 1 GOL GOL . 
D 4 GXE AAA 1 303 1 GXE XXX . 
E 5 HOH AAA 1 401 168 HOH HOH . 
E 5 HOH AAA 2 402 121 HOH HOH . 
E 5 HOH AAA 3 403 143 HOH HOH . 
E 5 HOH AAA 4 404 160 HOH HOH . 
E 5 HOH AAA 5 405 127 HOH HOH . 
E 5 HOH AAA 6 406 128 HOH HOH . 
E 5 HOH AAA 7 407 91 HOH HOH . 
E 5 HOH AAA 8 408 159 HOH HOH . 
E 5 HOH AAA 9 409 153 HOH HOH . 
E 5 HOH AAA 10 410 129 HOH HOH . 
E 5 HOH AAA 11 411 40 HOH HOH . 
E 5 HOH AAA 12 412 14 HOH HOH . 
E 5 HOH AAA 13 413 30 HOH HOH . 
E 5 HOH AAA 14 414 26 HOH HOH . 
E 5 HOH AAA 15 415 68 HOH HOH . 
E 5 HOH AAA 16 416 49 HOH HOH . 
E 5 HOH AAA 17 417 47 HOH HOH . 
E 5 HOH AAA 18 418 35 HOH HOH . 
E 5 HOH AAA 19 419 161 HOH HOH . 
E 5 HOH AAA 20 420 24 HOH HOH . 
E 5 HOH AAA 21 421 148 HOH HOH . 
E 5 HOH AAA 22 422 77 HOH HOH . 
E 5 HOH AAA 23 423 108 HOH HOH . 
E 5 HOH AAA 24 424 123 HOH HOH . 
E 5 HOH AAA 25 425 39 HOH HOH . 
E 5 HOH AAA 26 426 158 HOH HOH . 
E 5 HOH AAA 27 427 57 HOH HOH . 
E 5 HOH AAA 28 428 32 HOH HOH . 
E 5 HOH AAA 29 429 12 HOH HOH . 
E 5 HOH AAA 30 430 154 HOH HOH . 
E 5 HOH AAA 31 431 90 HOH HOH . 
E 5 HOH AAA 32 432 59 HOH HOH . 
E 5 HOH AAA 33 433 71 HOH HOH . 
E 5 HOH AAA 34 434 101 HOH HOH . 
E 5 HOH AAA 35 435 3 HOH HOH . 
E 5 HOH AAA 36 436 16 HOH HOH . 
E 5 HOH AAA 37 437 54 HOH HOH . 
E 5 HOH AAA 38 438 138 HOH HOH . 
E 5 HOH AAA 39 439 6 HOH HOH . 
E 5 HOH AAA 40 440 8 HOH HOH . 
E 5 HOH AAA 41 441 155 HOH HOH . 
E 5 HOH AAA 42 442 92 HOH HOH . 
E 5 HOH AAA 43 443 34 HOH HOH . 
E 5 HOH AAA 44 444 113 HOH HOH . 
E 5 HOH AAA 45 445 98 HOH HOH . 
E 5 HOH AAA 46 446 135 HOH HOH . 
E 5 HOH AAA 47 447 130 HOH HOH . 
E 5 HOH AAA 48 448 140 HOH HOH . 
E 5 HOH AAA 49 449 23 HOH HOH . 
E 5 HOH AAA 50 450 149 HOH HOH . 
E 5 HOH AAA 51 451 76 HOH HOH . 
E 5 HOH AAA 52 452 136 HOH HOH . 
E 5 HOH AAA 53 453 31 HOH HOH . 
E 5 HOH AAA 54 454 93 HOH HOH . 
E 5 HOH AAA 55 455 99 HOH HOH . 
E 5 HOH AAA 56 456 112 HOH HOH . 
E 5 HOH AAA 57 457 114 HOH HOH . 
E 5 HOH AAA 58 458 133 HOH HOH . 
E 5 HOH AAA 59 459 2 HOH HOH . 
E 5 HOH AAA 60 460 141 HOH HOH . 
E 5 HOH AAA 61 461 74 HOH HOH . 
E 5 HOH AAA 62 462 156 HOH HOH . 
E 5 HOH AAA 63 463 42 HOH HOH . 
E 5 HOH AAA 64 464 55 HOH HOH . 
E 5 HOH AAA 65 465 61 HOH HOH . 
E 5 HOH AAA 66 466 4 HOH HOH . 
E 5 HOH AAA 67 467 9 HOH HOH . 
E 5 HOH AAA 68 468 27 HOH HOH . 
E 5 HOH AAA 69 469 17 HOH HOH . 
E 5 HOH AAA 70 470 126 HOH HOH . 
E 5 HOH AAA 71 471 38 HOH HOH . 
E 5 HOH AAA 72 472 66 HOH HOH . 
E 5 HOH AAA 73 473 124 HOH HOH . 
E 5 HOH AAA 74 474 58 HOH HOH . 
E 5 HOH AAA 75 475 119 HOH HOH . 
E 5 HOH AAA 76 476 78 HOH HOH . 
E 5 HOH AAA 77 477 116 HOH HOH . 
E 5 HOH AAA 78 478 19 HOH HOH . 
E 5 HOH AAA 79 479 18 HOH HOH . 
E 5 HOH AAA 80 480 151 HOH HOH . 
E 5 HOH AAA 81 481 102 HOH HOH . 
E 5 HOH AAA 82 482 7 HOH HOH . 
E 5 HOH AAA 83 483 171 HOH HOH . 
E 5 HOH AAA 84 484 94 HOH HOH . 
E 5 HOH AAA 85 485 56 HOH HOH . 
E 5 HOH AAA 86 486 118 HOH HOH . 
E 5 HOH AAA 87 487 88 HOH HOH . 
E 5 HOH AAA 88 488 115 HOH HOH . 
E 5 HOH AAA 89 489 65 HOH HOH . 
E 5 HOH AAA 90 490 43 HOH HOH . 
E 5 HOH AAA 91 491 152 HOH HOH . 
E 5 HOH AAA 92 492 80 HOH HOH . 
E 5 HOH AAA 93 493 48 HOH HOH . 
E 5 HOH AAA 94 494 107 HOH HOH . 
E 5 HOH AAA 95 495 173 HOH HOH . 
E 5 HOH AAA 96 496 11 HOH HOH . 
E 5 HOH AAA 97 497 28 HOH HOH . 
E 5 HOH AAA 98 498 96 HOH HOH . 
E 5 HOH AAA 99 499 125 HOH HOH . 
E 5 HOH AAA 100 500 75 HOH HOH . 
E 5 HOH AAA 101 501 131 HOH HOH . 
E 5 HOH AAA 102 502 72 HOH HOH . 
E 5 HOH AAA 103 503 139 HOH HOH . 
E 5 HOH AAA 104 504 45 HOH HOH . 
E 5 HOH AAA 105 505 41 HOH HOH . 
E 5 HOH AAA 106 506 122 HOH HOH . 
E 5 HOH AAA 107 507 172 HOH HOH . 
E 5 HOH AAA 108 508 79 HOH HOH . 
E 5 HOH AAA 109 509 134 HOH HOH . 
E 5 HOH AAA 110 510 109 HOH HOH . 
E 5 HOH AAA 111 511 15 HOH HOH . 
E 5 HOH AAA 112 512 53 HOH HOH . 
E 5 HOH AAA 113 513 60 HOH HOH . 
E 5 HOH AAA 114 514 25 HOH HOH . 
E 5 HOH AAA 115 515 33 HOH HOH . 
E 5 HOH AAA 116 516 84 HOH HOH . 
E 5 HOH AAA 117 517 63 HOH HOH . 
E 5 HOH AAA 118 518 167 HOH HOH . 
E 5 HOH AAA 119 519 85 HOH HOH . 
E 5 HOH AAA 120 520 117 HOH HOH . 
E 5 HOH AAA 121 521 51 HOH HOH . 
E 5 HOH AAA 122 522 97 HOH HOH . 
E 5 HOH AAA 123 523 73 HOH HOH . 
E 5 HOH AAA 124 524 110 HOH HOH . 
E 5 HOH AAA 125 525 44 HOH HOH . 
E 5 HOH AAA 126 526 36 HOH HOH . 
E 5 HOH AAA 127 527 22 HOH HOH . 
E 5 HOH AAA 128 528 70 HOH HOH . 
E 5 HOH AAA 129 529 147 HOH HOH . 
E 5 HOH AAA 130 530 20 HOH HOH . 
E 5 HOH AAA 131 531 166 HOH HOH . 
E 5 HOH AAA 132 532 69 HOH HOH . 
E 5 HOH AAA 133 533 169 HOH HOH . 
E 5 HOH AAA 134 534 62 HOH HOH . 
E 5 HOH AAA 135 535 111 HOH HOH . 
E 5 HOH AAA 136 536 150 HOH HOH . 
E 5 HOH AAA 137 537 95 HOH HOH . 
E 5 HOH AAA 138 538 146 HOH HOH . 
E 5 HOH AAA 139 539 83 HOH HOH . 
E 5 HOH AAA 140 540 82 HOH HOH . 
E 5 HOH AAA 141 541 37 HOH HOH . 
E 5 HOH AAA 142 542 81 HOH HOH . 
E 5 HOH AAA 143 543 165 HOH HOH . 
E 5 HOH AAA 144 544 86 HOH HOH . 
E 5 HOH AAA 145 545 89 HOH HOH . 
E 5 HOH AAA 146 546 13 HOH HOH . 
E 5 HOH AAA 147 547 52 HOH HOH . 
E 5 HOH AAA 148 548 104 HOH HOH . 
E 5 HOH AAA 149 549 105 HOH HOH . 
E 5 HOH AAA 150 550 50 HOH HOH . 
E 5 HOH AAA 151 551 67 HOH HOH . 
E 5 HOH AAA 152 552 145 HOH HOH . 
E 5 HOH AAA 153 553 106 HOH HOH . 
E 5 HOH AAA 154 554 174 HOH HOH . 
E 5 HOH AAA 155 555 164 HOH HOH . 
E 5 HOH AAA 156 556 132 HOH HOH . 
E 5 HOH AAA 157 557 87 HOH HOH . 
E 5 HOH AAA 158 558 29 HOH HOH . 
E 5 HOH AAA 159 559 137 HOH HOH . 
E 5 HOH AAA 160 560 144 HOH HOH . 
E 5 HOH AAA 161 561 103 HOH HOH . 
E 5 HOH AAA 162 562 162 HOH HOH . 
E 5 HOH AAA 163 563 100 HOH HOH . 
E 5 HOH AAA 164 564 46 HOH HOH . 
E 5 HOH AAA 165 565 120 HOH HOH . 
E 5 HOH AAA 166 566 157 HOH HOH . 
E 5 HOH AAA 167 567 163 HOH HOH . 
E 5 HOH AAA 168 568 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE GXE . . . D 4 -4.833 0.006 16.449 1 18.1 ? SE GXE 303 AAA 1 
HETATM 2 C C GXE . . . D 4 -5.449 1.794 15.983 1 17.33 ? C GXE 303 AAA 1 
HETATM 3 C C1 GXE . . . D 4 -6.383 2.404 16.83 1 19.26 ? C1 GXE 303 AAA 1 
HETATM 4 C C2 GXE . . . D 4 -6.812 3.703 16.561 1 20.23 ? C2 GXE 303 AAA 1 
HETATM 5 C C3 GXE . . . D 4 -6.314 4.404 15.452 1 18.21 ? C3 GXE 303 AAA 1 
HETATM 6 C C4 GXE . . . D 4 -5.423 3.789 14.596 1 20.49 ? C4 GXE 303 AAA 1 
HETATM 7 C C5 GXE . . . D 4 -4.991 2.488 14.85 1 19.16 ? C5 GXE 303 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           409 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#