data_6XX7 # _model_server_result.job_id mYbaMV-oLyy4Xi7klh6WKQ _model_server_result.datetime_utc '2024-10-13 13:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XX7 # _exptl.entry_id 6XX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XX7 _cell.length_a 60.56 _cell.length_b 60.56 _cell.length_c 228.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 157 A ASN 156 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 B O3G ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc3 B O1A ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6XX7 _atom_sites.fract_transf_matrix[1][1] 0.016513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 MG A 1 402 2 MG MG . D 4 SO4 A 1 403 3 SO4 SO4 . E 5 CL A 1 404 4 CL CL . F 5 CL A 1 405 5 CL CL . G 5 CL A 1 406 6 CL CL . H 6 PGE A 1 407 7 PGE PGE . I 7 HOH A 1 501 23 HOH HOH . I 7 HOH A 2 502 65 HOH HOH . I 7 HOH A 3 503 35 HOH HOH . I 7 HOH A 4 504 11 HOH HOH . I 7 HOH A 5 505 51 HOH HOH . I 7 HOH A 6 506 52 HOH HOH . I 7 HOH A 7 507 12 HOH HOH . I 7 HOH A 8 508 9 HOH HOH . I 7 HOH A 9 509 28 HOH HOH . I 7 HOH A 10 510 36 HOH HOH . I 7 HOH A 11 511 60 HOH HOH . I 7 HOH A 12 512 17 HOH HOH . I 7 HOH A 13 513 13 HOH HOH . I 7 HOH A 14 514 66 HOH HOH . I 7 HOH A 15 515 62 HOH HOH . I 7 HOH A 16 516 19 HOH HOH . I 7 HOH A 17 517 41 HOH HOH . I 7 HOH A 18 518 14 HOH HOH . I 7 HOH A 19 519 25 HOH HOH . I 7 HOH A 20 520 24 HOH HOH . I 7 HOH A 21 521 27 HOH HOH . I 7 HOH A 22 522 31 HOH HOH . I 7 HOH A 23 523 44 HOH HOH . I 7 HOH A 24 524 18 HOH HOH . I 7 HOH A 25 525 48 HOH HOH . I 7 HOH A 26 526 20 HOH HOH . I 7 HOH A 27 527 39 HOH HOH . I 7 HOH A 28 528 40 HOH HOH . I 7 HOH A 29 529 22 HOH HOH . I 7 HOH A 30 530 50 HOH HOH . I 7 HOH A 31 531 33 HOH HOH . I 7 HOH A 32 532 15 HOH HOH . I 7 HOH A 33 533 34 HOH HOH . I 7 HOH A 34 534 61 HOH HOH . I 7 HOH A 35 535 59 HOH HOH . I 7 HOH A 36 536 10 HOH HOH . I 7 HOH A 37 537 16 HOH HOH . I 7 HOH A 38 538 30 HOH HOH . I 7 HOH A 39 539 8 HOH HOH . I 7 HOH A 40 540 49 HOH HOH . I 7 HOH A 41 541 26 HOH HOH . I 7 HOH A 42 542 37 HOH HOH . I 7 HOH A 43 543 21 HOH HOH . I 7 HOH A 44 544 38 HOH HOH . I 7 HOH A 45 545 46 HOH HOH . I 7 HOH A 46 546 43 HOH HOH . I 7 HOH A 47 547 45 HOH HOH . I 7 HOH A 48 548 54 HOH HOH . I 7 HOH A 49 549 67 HOH HOH . I 7 HOH A 50 550 63 HOH HOH . I 7 HOH A 51 551 42 HOH HOH . I 7 HOH A 52 552 53 HOH HOH . I 7 HOH A 53 553 57 HOH HOH . I 7 HOH A 54 554 64 HOH HOH . I 7 HOH A 55 555 56 HOH HOH . I 7 HOH A 56 556 29 HOH HOH . I 7 HOH A 57 557 32 HOH HOH . I 7 HOH A 58 558 58 HOH HOH . I 7 HOH A 59 559 55 HOH HOH . I 7 HOH A 60 560 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 30.809 3.433 15.322 1 132.2 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 31.519 2.197 14.869 1 136.4 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 31.779 4.666 15.163 1 129.93 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 30.426 3.279 16.85 1 131.7 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 29.102 2.509 13.264 1 114.06 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 29.303 1.151 13.851 1 103.52 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 30.065 2.669 12.051 1 117.4 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 29.411 3.712 14.399 1 122.66 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 26.42 2.704 13.826 1 82.9 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 26.931 2.911 15.201 1 81.48 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 25.601 1.417 13.678 1 78.83 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 27.62 2.618 12.776 1 107.53 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 25.567 3.98 13.425 1 78.1 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 26.059 5.304 13.707 1 72.67 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 24.912 6.274 13.861 1 72.05 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 23.822 5.91 12.988 1 73.51 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 24.272 6.335 15.239 1 73.87 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 25.052 7.11 16.142 1 79.87 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 22.913 6.96 14.92 1 69.85 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 22.987 8.377 14.807 1 70.44 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 22.592 6.331 13.556 1 69.37 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 21.702 5.179 13.639 1 68.51 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 22.059 3.854 13.66 1 68.41 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 21.045 3.03 13.749 1 66.43 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 19.939 3.867 13.793 1 71.15 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 18.56 3.614 13.893 1 79.51 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 18.032 2.389 13.959 1 75.06 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 17.725 4.678 13.911 1 80.49 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 18.247 5.906 13.839 1 73.79 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 19.53 6.268 13.748 1 70.78 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 20.332 5.194 13.727 1 72.11 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #