data_6XXQ
#
_model_server_result.job_id            TcBPg8Y6So3hHqrnyymPmw 
_model_server_result.datetime_utc      '2024-11-22 16:33:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xxq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    6XXQ 
#
_exptl.entry_id    6XXQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          135 
_cell.angle_gamma         90 
_cell.entry_id            6XXQ 
_cell.length_a            133.532 
_cell.length_b            69.312 
_cell.length_c            94.517 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XXQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 46 A ASP 46 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc2 A OD1 ASP 46 A ASP 46 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc3 A OD2 ASP 46 A ASP 46 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc4 A OD2 ASP 48 A ASP 48 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc5 D MG MG . A MG 302 1_555 F O3G ATP . A ATP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc6 D MG MG . A MG 302 1_555 F O2B ATP . A ATP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc7 E MG MG . A MG 303 1_555 F O2A ATP . A ATP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc8 E MG MG . A MG 303 1_555 F O1A ATP . A ATP 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc9 E MG MG . A MG 303 1_555 G O2B SCM . A SCM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc10 B OD1 ASP 46 B ASP 46 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc11 B OD2 ASP 48 B ASP 48 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc12 I MG MG . B MG 302 1_555 J O2G ATP . B ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc13 I MG MG . B MG 302 1_555 J O2B ATP . B ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc14 I MG MG . B MG 302 1_555 J O2A ATP . B ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6XXQ 
_atom_sites.fract_transf_matrix[1][1]    0.007489 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007489 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 301 256 NA NA . 
D 3 MG A 1 302 257 MG MG . 
E 3 MG A 1 303 259 MG MG . 
F 4 ATP A 1 304 401 ATP ATP . 
G 5 SCM A 1 305 501 SCM SCM . 
H 2 NA B 1 301 255 NA NA . 
I 3 MG B 1 302 256 MG MG . 
J 4 ATP B 1 303 401 ATP ATP . 
K 5 SCM B 1 304 501 SCM SCM . 
L 6 HOH A 1 401 8 HOH HOH . 
L 6 HOH A 2 402 6 HOH HOH . 
L 6 HOH A 3 403 1 HOH HOH . 
L 6 HOH A 4 404 4 HOH HOH . 
L 6 HOH A 5 405 10 HOH HOH . 
L 6 HOH A 6 406 7 HOH HOH . 
L 6 HOH A 7 407 5 HOH HOH . 
M 6 HOH B 1 401 3 HOH HOH . 
M 6 HOH B 2 402 9 HOH HOH . 
M 6 HOH B 3 403 12 HOH HOH . 
M 6 HOH B 4 404 11 HOH HOH . 
M 6 HOH B 5 405 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 4 40.827 44.702 56.045 1 39.89 ? PG ATP 303 B 1 
HETATM 2 O O1G ATP . . . J 4 41.496 45.98 56.418 1 38.08 ? O1G ATP 303 B 1 
HETATM 3 O O2G ATP . . . J 4 39.629 44.37 56.942 1 39.19 ? O2G ATP 303 B 1 
HETATM 4 O O3G ATP . . . J 4 41.781 43.506 56.042 1 42.65 ? O3G ATP 303 B 1 
HETATM 5 P PB ATP . . . J 4 38.755 44.863 54.016 1 36.99 ? PB ATP 303 B 1 
HETATM 6 O O1B ATP . . . J 4 38.662 44.397 52.617 1 40.66 ? O1B ATP 303 B 1 
HETATM 7 O O2B ATP . . . J 4 37.865 44.154 55.033 1 35.65 ? O2B ATP 303 B 1 
HETATM 8 O O3B ATP . . . J 4 40.246 44.779 54.564 1 37.15 ? O3B ATP 303 B 1 
HETATM 9 P PA ATP . . . J 4 37.795 47.308 55.287 1 37.18 ? PA ATP 303 B 1 
HETATM 10 O O1A ATP . . . J 4 38.748 48.303 55.819 1 40.18 ? O1A ATP 303 B 1 
HETATM 11 O O2A ATP . . . J 4 37.227 46.348 56.329 1 42.48 ? O2A ATP 303 B 1 
HETATM 12 O O3A ATP . . . J 4 38.454 46.421 54.142 1 35.82 ? O3A ATP 303 B 1 
HETATM 13 O O5' ATP . . . J 4 36.547 48.001 54.551 1 35.35 ? O5' ATP 303 B 1 
HETATM 14 C C5' ATP . . . J 4 36.749 48.738 53.327 1 39.08 ? C5' ATP 303 B 1 
HETATM 15 C C4' ATP . . . J 4 35.973 50.029 53.395 1 34.59 ? C4' ATP 303 B 1 
HETATM 16 O O4' ATP . . . J 4 36.321 50.858 52.263 1 37.05 ? O4' ATP 303 B 1 
HETATM 17 C C3' ATP . . . J 4 34.452 49.878 53.352 1 39.45 ? C3' ATP 303 B 1 
HETATM 18 O O3' ATP . . . J 4 33.823 50.87 54.155 1 38.97 ? O3' ATP 303 B 1 
HETATM 19 C C2' ATP . . . J 4 34.139 50.076 51.869 1 41.26 ? C2' ATP 303 B 1 
HETATM 20 O O2' ATP . . . J 4 32.811 50.542 51.662 1 43.36 ? O2' ATP 303 B 1 
HETATM 21 C C1' ATP . . . J 4 35.161 51.153 51.508 1 39.58 ? C1' ATP 303 B 1 
HETATM 22 N N9 ATP . . . J 4 35.528 51.227 50.095 1 38.65 ? N9 ATP 303 B 1 
HETATM 23 C C8 ATP . . . J 4 35.694 52.376 49.368 1 37.15 ? C8 ATP 303 B 1 
HETATM 24 N N7 ATP . . . J 4 36.018 52.175 48.114 1 37.21 ? N7 ATP 303 B 1 
HETATM 25 C C5 ATP . . . J 4 36.069 50.793 48.005 1 39.35 ? C5 ATP 303 B 1 
HETATM 26 C C6 ATP . . . J 4 36.344 49.936 46.922 1 40.62 ? C6 ATP 303 B 1 
HETATM 27 N N6 ATP . . . J 4 36.645 50.363 45.691 1 37.68 ? N6 ATP 303 B 1 
HETATM 28 N N1 ATP . . . J 4 36.297 48.605 47.147 1 40.8 ? N1 ATP 303 B 1 
HETATM 29 C C2 ATP . . . J 4 35.998 48.171 48.375 1 42.84 ? C2 ATP 303 B 1 
HETATM 30 N N3 ATP . . . J 4 35.725 48.883 49.472 1 41.7 ? N3 ATP 303 B 1 
HETATM 31 C C4 ATP . . . J 4 35.772 50.195 49.22 1 38.91 ? C4 ATP 303 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#