data_6XY3 # _model_server_result.job_id r7QspVKzbr-RtEDKu4OGJg _model_server_result.datetime_utc '2024-11-04 20:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6XY3 # _exptl.entry_id 6XY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XY3 _cell.length_a 39.01 _cell.length_b 42.7 _cell.length_c 89.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 AAA ASP 21 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 A OD1 ASP 23 AAA ASP 23 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OD1 ASP 25 AAA ASP 25 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 A O THR 27 AAA THR 27 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 A OE1 GLU 32 AAA GLU 32 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 A OE2 GLU 32 AAA GLU 32 1_555 C CA CA . AAA CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc7 A OD1 ASP 57 AAA ASP 57 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 A OD1 ASP 59 AAA ASP 59 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc9 A OD1 ASN 61 AAA ASN 61 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc10 A O THR 63 AAA THR 63 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc11 A OE1 GLU 68 AAA GLU 68 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc12 A OE2 GLU 68 AAA GLU 68 1_555 D CA CA . AAA CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc13 A OD1 ASP 94 AAA ASP 94 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc14 A OD1 ASP 96 AAA ASP 96 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc15 A OD1 ASN 98 AAA ASN 98 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc16 A O TYR 100 AAA TYR 100 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc17 A OE1 GLU 105 AAA GLU 105 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc18 A OE2 GLU 105 AAA GLU 105 1_555 E CA CA . AAA CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc19 A OD1 ASP 130 AAA ASP 130 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc20 A OD1 ASP 132 AAA ASP 132 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc21 A OD1 ASP 134 AAA ASP 134 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc22 A O GLN 136 AAA GLN 136 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc23 A OE1 GLU 141 AAA GLU 141 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc24 A OE2 GLU 141 AAA GLU 141 1_555 F CA CA . AAA CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc25 D CA CA . AAA CA 202 1_555 G O HOH . AAA HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc26 E CA CA . AAA CA 203 1_555 G O HOH . AAA HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc27 F CA CA . AAA CA 204 1_555 G O HOH . AAA HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XY3 _atom_sites.fract_transf_matrix[1][1] 0.025634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA AAA 1 201 231 CA CA . D 3 CA AAA 1 202 232 CA CA . E 3 CA AAA 1 203 233 CA CA . F 3 CA AAA 1 204 234 CA CA . G 4 HOH AAA 1 301 26 HOH HOH . G 4 HOH AAA 2 302 33 HOH HOH . G 4 HOH AAA 3 303 47 HOH HOH . G 4 HOH AAA 4 304 20 HOH HOH . G 4 HOH AAA 5 305 38 HOH HOH . G 4 HOH AAA 6 306 6 HOH HOH . G 4 HOH AAA 7 307 51 HOH HOH . G 4 HOH AAA 8 308 2 HOH HOH . G 4 HOH AAA 9 309 18 HOH HOH . G 4 HOH AAA 10 310 39 HOH HOH . G 4 HOH AAA 11 311 31 HOH HOH . G 4 HOH AAA 12 312 14 HOH HOH . G 4 HOH AAA 13 313 10 HOH HOH . G 4 HOH AAA 14 314 46 HOH HOH . G 4 HOH AAA 15 315 19 HOH HOH . G 4 HOH AAA 16 316 37 HOH HOH . G 4 HOH AAA 17 317 40 HOH HOH . G 4 HOH AAA 18 318 15 HOH HOH . G 4 HOH AAA 19 319 9 HOH HOH . G 4 HOH AAA 20 320 8 HOH HOH . G 4 HOH AAA 21 321 32 HOH HOH . G 4 HOH AAA 22 322 35 HOH HOH . G 4 HOH AAA 23 323 36 HOH HOH . G 4 HOH AAA 24 324 11 HOH HOH . G 4 HOH AAA 25 325 50 HOH HOH . G 4 HOH AAA 26 326 27 HOH HOH . G 4 HOH AAA 27 327 22 HOH HOH . G 4 HOH AAA 28 328 3 HOH HOH . G 4 HOH AAA 29 329 5 HOH HOH . G 4 HOH AAA 30 330 12 HOH HOH . G 4 HOH AAA 31 331 28 HOH HOH . G 4 HOH AAA 32 332 7 HOH HOH . G 4 HOH AAA 33 333 30 HOH HOH . G 4 HOH AAA 34 334 25 HOH HOH . G 4 HOH AAA 35 335 17 HOH HOH . G 4 HOH AAA 36 336 21 HOH HOH . G 4 HOH AAA 37 337 4 HOH HOH . G 4 HOH AAA 38 338 29 HOH HOH . G 4 HOH AAA 39 339 13 HOH HOH . G 4 HOH AAA 40 340 1 HOH HOH . G 4 HOH AAA 41 341 44 HOH HOH . G 4 HOH AAA 42 342 24 HOH HOH . G 4 HOH AAA 43 343 34 HOH HOH . G 4 HOH AAA 44 344 41 HOH HOH . G 4 HOH AAA 45 345 23 HOH HOH . H 4 HOH BBB 1 101 43 HOH HOH . H 4 HOH BBB 2 102 48 HOH HOH . H 4 HOH BBB 3 103 45 HOH HOH . H 4 HOH BBB 4 104 49 HOH HOH . H 4 HOH BBB 5 105 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.941 _atom_site.Cartn_y 8.999 _atom_site.Cartn_z -36.238 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #