data_6XYA
#
_model_server_result.job_id            eeCbqvJfk5je5kAsoXe49Q 
_model_server_result.datetime_utc      '2025-02-05 04:38:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1902}' 
#
_entry.id    6XYA 
#
_exptl.entry_id    6XYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XYA 
_cell.length_a            38.974 
_cell.length_b            44.715 
_cell.length_c            63.515 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 49 B ASP 1741 1_555 C NA NA . B NA 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc2 A OG1 THR 51 B THR 1743 1_555 C NA NA . B NA 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc3 A OG SER 52 B SER 1744 1_555 C NA NA . B NA 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XYA 
_atom_sites.fract_transf_matrix[1][1]    0.025658 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MGP B 1 1901 1 MGP MGP . 
C 3 NA B 1 1902 1 NA NA . 
D 4 HOH B 1 2001 70 HOH HOH . 
D 4 HOH B 2 2002 4 HOH HOH . 
D 4 HOH B 3 2003 196 HOH HOH . 
D 4 HOH B 4 2004 85 HOH HOH . 
D 4 HOH B 5 2005 156 HOH HOH . 
D 4 HOH B 6 2006 130 HOH HOH . 
D 4 HOH B 7 2007 86 HOH HOH . 
D 4 HOH B 8 2008 158 HOH HOH . 
D 4 HOH B 9 2009 48 HOH HOH . 
D 4 HOH B 10 2010 119 HOH HOH . 
D 4 HOH B 11 2011 57 HOH HOH . 
D 4 HOH B 12 2012 25 HOH HOH . 
D 4 HOH B 13 2013 179 HOH HOH . 
D 4 HOH B 14 2014 148 HOH HOH . 
D 4 HOH B 15 2015 18 HOH HOH . 
D 4 HOH B 16 2016 92 HOH HOH . 
D 4 HOH B 17 2017 59 HOH HOH . 
D 4 HOH B 18 2018 61 HOH HOH . 
D 4 HOH B 19 2019 135 HOH HOH . 
D 4 HOH B 20 2020 177 HOH HOH . 
D 4 HOH B 21 2021 73 HOH HOH . 
D 4 HOH B 22 2022 51 HOH HOH . 
D 4 HOH B 23 2023 31 HOH HOH . 
D 4 HOH B 24 2024 82 HOH HOH . 
D 4 HOH B 25 2025 100 HOH HOH . 
D 4 HOH B 26 2026 12 HOH HOH . 
D 4 HOH B 27 2027 79 HOH HOH . 
D 4 HOH B 28 2028 55 HOH HOH . 
D 4 HOH B 29 2029 99 HOH HOH . 
D 4 HOH B 30 2030 80 HOH HOH . 
D 4 HOH B 31 2031 21 HOH HOH . 
D 4 HOH B 32 2032 91 HOH HOH . 
D 4 HOH B 33 2033 172 HOH HOH . 
D 4 HOH B 34 2034 43 HOH HOH . 
D 4 HOH B 35 2035 161 HOH HOH . 
D 4 HOH B 36 2036 6 HOH HOH . 
D 4 HOH B 37 2037 104 HOH HOH . 
D 4 HOH B 38 2038 30 HOH HOH . 
D 4 HOH B 39 2039 81 HOH HOH . 
D 4 HOH B 40 2040 2 HOH HOH . 
D 4 HOH B 41 2041 115 HOH HOH . 
D 4 HOH B 42 2042 23 HOH HOH . 
D 4 HOH B 43 2043 58 HOH HOH . 
D 4 HOH B 44 2044 175 HOH HOH . 
D 4 HOH B 45 2045 83 HOH HOH . 
D 4 HOH B 46 2046 10 HOH HOH . 
D 4 HOH B 47 2047 42 HOH HOH . 
D 4 HOH B 48 2048 50 HOH HOH . 
D 4 HOH B 49 2049 1 HOH HOH . 
D 4 HOH B 50 2050 16 HOH HOH . 
D 4 HOH B 51 2051 90 HOH HOH . 
D 4 HOH B 52 2052 13 HOH HOH . 
D 4 HOH B 53 2053 46 HOH HOH . 
D 4 HOH B 54 2054 71 HOH HOH . 
D 4 HOH B 55 2055 49 HOH HOH . 
D 4 HOH B 56 2056 62 HOH HOH . 
D 4 HOH B 57 2057 19 HOH HOH . 
D 4 HOH B 58 2058 67 HOH HOH . 
D 4 HOH B 59 2059 66 HOH HOH . 
D 4 HOH B 60 2060 27 HOH HOH . 
D 4 HOH B 61 2061 72 HOH HOH . 
D 4 HOH B 62 2062 76 HOH HOH . 
D 4 HOH B 63 2063 34 HOH HOH . 
D 4 HOH B 64 2064 17 HOH HOH . 
D 4 HOH B 65 2065 20 HOH HOH . 
D 4 HOH B 66 2066 56 HOH HOH . 
D 4 HOH B 67 2067 101 HOH HOH . 
D 4 HOH B 68 2068 5 HOH HOH . 
D 4 HOH B 69 2069 78 HOH HOH . 
D 4 HOH B 70 2070 28 HOH HOH . 
D 4 HOH B 71 2071 129 HOH HOH . 
D 4 HOH B 72 2072 11 HOH HOH . 
D 4 HOH B 73 2073 106 HOH HOH . 
D 4 HOH B 74 2074 170 HOH HOH . 
D 4 HOH B 75 2075 174 HOH HOH . 
D 4 HOH B 76 2076 52 HOH HOH . 
D 4 HOH B 77 2077 38 HOH HOH . 
D 4 HOH B 78 2078 133 HOH HOH . 
D 4 HOH B 79 2079 7 HOH HOH . 
D 4 HOH B 80 2080 193 HOH HOH . 
D 4 HOH B 81 2081 126 HOH HOH . 
D 4 HOH B 82 2082 22 HOH HOH . 
D 4 HOH B 83 2083 8 HOH HOH . 
D 4 HOH B 84 2084 69 HOH HOH . 
D 4 HOH B 85 2085 54 HOH HOH . 
D 4 HOH B 86 2086 163 HOH HOH . 
D 4 HOH B 87 2087 145 HOH HOH . 
D 4 HOH B 88 2088 65 HOH HOH . 
D 4 HOH B 89 2089 26 HOH HOH . 
D 4 HOH B 90 2090 41 HOH HOH . 
D 4 HOH B 91 2091 36 HOH HOH . 
D 4 HOH B 92 2092 122 HOH HOH . 
D 4 HOH B 93 2093 37 HOH HOH . 
D 4 HOH B 94 2094 24 HOH HOH . 
D 4 HOH B 95 2095 102 HOH HOH . 
D 4 HOH B 96 2096 75 HOH HOH . 
D 4 HOH B 97 2097 168 HOH HOH . 
D 4 HOH B 98 2098 98 HOH HOH . 
D 4 HOH B 99 2099 45 HOH HOH . 
D 4 HOH B 100 2100 164 HOH HOH . 
D 4 HOH B 101 2101 116 HOH HOH . 
D 4 HOH B 102 2102 108 HOH HOH . 
D 4 HOH B 103 2103 9 HOH HOH . 
D 4 HOH B 104 2104 64 HOH HOH . 
D 4 HOH B 105 2105 132 HOH HOH . 
D 4 HOH B 106 2106 32 HOH HOH . 
D 4 HOH B 107 2107 103 HOH HOH . 
D 4 HOH B 108 2108 53 HOH HOH . 
D 4 HOH B 109 2109 96 HOH HOH . 
D 4 HOH B 110 2110 35 HOH HOH . 
D 4 HOH B 111 2111 169 HOH HOH . 
D 4 HOH B 112 2112 160 HOH HOH . 
D 4 HOH B 113 2113 146 HOH HOH . 
D 4 HOH B 114 2114 94 HOH HOH . 
D 4 HOH B 115 2115 112 HOH HOH . 
D 4 HOH B 116 2116 74 HOH HOH . 
D 4 HOH B 117 2117 68 HOH HOH . 
D 4 HOH B 118 2118 173 HOH HOH . 
D 4 HOH B 119 2119 151 HOH HOH . 
D 4 HOH B 120 2120 95 HOH HOH . 
D 4 HOH B 121 2121 84 HOH HOH . 
D 4 HOH B 122 2122 113 HOH HOH . 
D 4 HOH B 123 2123 77 HOH HOH . 
D 4 HOH B 124 2124 155 HOH HOH . 
D 4 HOH B 125 2125 149 HOH HOH . 
D 4 HOH B 126 2126 176 HOH HOH . 
D 4 HOH B 127 2127 123 HOH HOH . 
D 4 HOH B 128 2128 195 HOH HOH . 
D 4 HOH B 129 2129 117 HOH HOH . 
D 4 HOH B 130 2130 185 HOH HOH . 
D 4 HOH B 131 2131 107 HOH HOH . 
D 4 HOH B 132 2132 197 HOH HOH . 
D 4 HOH B 133 2133 125 HOH HOH . 
D 4 HOH B 134 2134 147 HOH HOH . 
D 4 HOH B 135 2135 131 HOH HOH . 
D 4 HOH B 136 2136 191 HOH HOH . 
D 4 HOH B 137 2137 138 HOH HOH . 
D 4 HOH B 138 2138 154 HOH HOH . 
D 4 HOH B 139 2139 97 HOH HOH . 
D 4 HOH B 140 2140 93 HOH HOH . 
D 4 HOH B 141 2141 29 HOH HOH . 
D 4 HOH B 142 2142 134 HOH HOH . 
D 4 HOH B 143 2143 190 HOH HOH . 
D 4 HOH B 144 2144 165 HOH HOH . 
D 4 HOH B 145 2145 139 HOH HOH . 
D 4 HOH B 146 2146 180 HOH HOH . 
D 4 HOH B 147 2147 14 HOH HOH . 
D 4 HOH B 148 2148 127 HOH HOH . 
D 4 HOH B 149 2149 137 HOH HOH . 
D 4 HOH B 150 2150 120 HOH HOH . 
D 4 HOH B 151 2151 111 HOH HOH . 
D 4 HOH B 152 2152 178 HOH HOH . 
D 4 HOH B 153 2153 88 HOH HOH . 
D 4 HOH B 154 2154 143 HOH HOH . 
D 4 HOH B 155 2155 188 HOH HOH . 
D 4 HOH B 156 2156 142 HOH HOH . 
D 4 HOH B 157 2157 198 HOH HOH . 
D 4 HOH B 158 2158 181 HOH HOH . 
D 4 HOH B 159 2159 128 HOH HOH . 
D 4 HOH B 160 2160 44 HOH HOH . 
D 4 HOH B 161 2161 118 HOH HOH . 
D 4 HOH B 162 2162 33 HOH HOH . 
D 4 HOH B 163 2163 109 HOH HOH . 
D 4 HOH B 164 2164 136 HOH HOH . 
D 4 HOH B 165 2165 144 HOH HOH . 
D 4 HOH B 166 2166 110 HOH HOH . 
D 4 HOH B 167 2167 200 HOH HOH . 
D 4 HOH B 168 2168 15 HOH HOH . 
D 4 HOH B 169 2169 140 HOH HOH . 
D 4 HOH B 170 2170 3 HOH HOH . 
D 4 HOH B 171 2171 159 HOH HOH . 
D 4 HOH B 172 2172 60 HOH HOH . 
D 4 HOH B 173 2173 167 HOH HOH . 
D 4 HOH B 174 2174 63 HOH HOH . 
D 4 HOH B 175 2175 187 HOH HOH . 
D 4 HOH B 176 2176 141 HOH HOH . 
D 4 HOH B 177 2177 152 HOH HOH . 
D 4 HOH B 178 2178 171 HOH HOH . 
D 4 HOH B 179 2179 105 HOH HOH . 
D 4 HOH B 180 2180 194 HOH HOH . 
D 4 HOH B 181 2181 186 HOH HOH . 
D 4 HOH B 182 2182 121 HOH HOH . 
D 4 HOH B 183 2183 183 HOH HOH . 
D 4 HOH B 184 2184 114 HOH HOH . 
D 4 HOH B 185 2185 89 HOH HOH . 
D 4 HOH B 186 2186 87 HOH HOH . 
D 4 HOH B 187 2187 157 HOH HOH . 
D 4 HOH B 188 2188 199 HOH HOH . 
D 4 HOH B 189 2189 162 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -14.561 
_atom_site.Cartn_y               13.449 
_atom_site.Cartn_z               10.165 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.28 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1902 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#