data_6XYL # _model_server_result.job_id 6-1zbwqBL2D1hMXHtQwj1Q _model_server_result.datetime_utc '2024-12-14 17:40:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 6XYL # _exptl.entry_id 6XYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.22 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XYL _cell.length_a 82.441 _cell.length_b 82.441 _cell.length_c 421.254 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,L 1 1 B,D,H,J 2 1 C,E,I,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C11 H15 N2 O7 P' _chem_comp.formula_weight 318.22 _chem_comp.id P1T _chem_comp.mon_nstd_flag . _chem_comp.name '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P P1T sing 235 n n OP1 HOP1 P1T sing 236 n n P OP2 P1T doub 237 n n P OP4 P1T sing 238 n n P OP3 P1T sing 239 n n OP3 HOP3 P1T sing 240 n n OP4 C5A P1T sing 241 n n C5A C5 P1T sing 242 n n C5A H5A1 P1T sing 243 n n C5A H5A2 P1T sing 244 n n C5 C4 P1T sing 245 n y C5 C6 P1T doub 246 n y C6 N1 P1T sing 247 n y C6 H6 P1T sing 248 n n N1 C2 P1T doub 249 n y C2 C3 P1T sing 250 n y C2 C2A P1T sing 251 n n C2A H2A1 P1T sing 252 n n C2A H2A2 P1T sing 253 n n C2A H2A3 P1T sing 254 n n C3 O3A P1T sing 255 n n C3 C4 P1T doub 256 n y O3A HO3A P1T sing 257 n n C4 C4A P1T sing 258 n n C4A N P1T sing 259 n n C4A H4A1 P1T sing 260 n n C4A H4A2 P1T sing 261 n n N CA P1T sing 262 n n N HN P1T sing 263 n n CA C P1T sing 264 n n CA CB P1T doub 265 n n CB HB1 P1T sing 266 n n CB HB2 P1T sing 267 n n C OXT P1T doub 268 n n C O P1T sing 269 n n O HO P1T sing 270 n n # _atom_sites.entry_id 6XYL _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0.007003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 P1T A 1 601 601 P1T P1T . H 2 P1T B 1 601 601 P1T P1T . I 2 P1T C 1 601 601 P1T P1T . J 2 P1T D 1 601 601 P1T P1T . K 2 P1T E 1 601 601 P1T P1T . L 2 P1T F 1 601 601 P1T P1T . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP1 P1T . . . G 2 5.363 20.685 -21.046 1 64.09 ? OP1 P1T 601 A 1 HETATM 2 P P P1T . . . G 2 4.752 20.426 -19.69 1 63.69 ? P P1T 601 A 1 HETATM 3 O OP2 P1T . . . G 2 3.341 19.916 -19.864 1 63.61 ? OP2 P1T 601 A 1 HETATM 4 O OP3 P1T . . . G 2 4.729 21.71 -18.896 1 63.54 ? OP3 P1T 601 A 1 HETATM 5 O OP4 P1T . . . G 2 5.648 19.3 -18.888 1 63.53 ? OP4 P1T 601 A 1 HETATM 6 C C5A P1T . . . G 2 5.55 17.965 -19.289 1 63.63 ? C5A P1T 601 A 1 HETATM 7 C C5 P1T . . . G 2 5.469 17.064 -18.058 1 63.36 ? C5 P1T 601 A 1 HETATM 8 C C6 P1T . . . G 2 6.537 16.245 -17.73 1 63.43 ? C6 P1T 601 A 1 HETATM 9 N N1 P1T . . . G 2 6.469 15.447 -16.642 1 63.22 ? N1 P1T 601 A 1 HETATM 10 C C2 P1T . . . G 2 5.359 15.446 -15.871 1 62.93 ? C2 P1T 601 A 1 HETATM 11 C C2A P1T . . . G 2 5.284 14.543 -14.642 1 62.71 ? C2A P1T 601 A 1 HETATM 12 C C3 P1T . . . G 2 4.288 16.264 -16.196 1 62.85 ? C3 P1T 601 A 1 HETATM 13 O O3A P1T . . . G 2 3.138 16.262 -15.397 1 62.57 ? O3A P1T 601 A 1 HETATM 14 C C4 P1T . . . G 2 4.355 17.064 -17.287 1 63.07 ? C4 P1T 601 A 1 HETATM 15 C C4A P1T . . . G 2 3.174 17.967 -17.647 1 63.01 ? C4A P1T 601 A 1 HETATM 16 N N P1T . . . G 2 2.118 17.166 -18.239 1 62.89 ? N P1T 601 A 1 HETATM 17 C CA P1T . . . G 2 0.727 17.525 -18.03 1 62.82 ? CA P1T 601 A 1 HETATM 18 C CB P1T . . . G 2 -0.183 17.171 -18.913 1 63.05 ? CB P1T 601 A 1 HETATM 19 C C P1T . . . G 2 0.318 18.312 -16.787 1 62.52 ? C P1T 601 A 1 HETATM 20 O O P1T . . . G 2 1.187 18.652 -15.941 1 62.27 ? O P1T 601 A 1 HETATM 21 O OXT P1T . . . G 2 -0.89 18.622 -16.607 1 62.53 ? OXT P1T 601 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #