data_6XYL
#
_model_server_result.job_id            trLbhS9kd2hMajWsqaYUcw 
_model_server_result.datetime_utc      '2024-12-04 09:30:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xyl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    6XYL 
#
_exptl.entry_id    6XYL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.22 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XYL 
_cell.length_a            82.441 
_cell.length_b            82.441 
_cell.length_c            421.254 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XYL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,L 1 1 
B,D,H,J 2 1 
C,E,I,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C11 H15 N2 O7 P' 
_chem_comp.formula_weight    318.22 
_chem_comp.id                P1T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP1 P P1T sing 235 n n 
OP1 HOP1 P1T sing 236 n n 
P OP2 P1T doub 237 n n 
P OP4 P1T sing 238 n n 
P OP3 P1T sing 239 n n 
OP3 HOP3 P1T sing 240 n n 
OP4 C5A P1T sing 241 n n 
C5A C5 P1T sing 242 n n 
C5A H5A1 P1T sing 243 n n 
C5A H5A2 P1T sing 244 n n 
C5 C4 P1T sing 245 n y 
C5 C6 P1T doub 246 n y 
C6 N1 P1T sing 247 n y 
C6 H6 P1T sing 248 n n 
N1 C2 P1T doub 249 n y 
C2 C3 P1T sing 250 n y 
C2 C2A P1T sing 251 n n 
C2A H2A1 P1T sing 252 n n 
C2A H2A2 P1T sing 253 n n 
C2A H2A3 P1T sing 254 n n 
C3 O3A P1T sing 255 n n 
C3 C4 P1T doub 256 n y 
O3A HO3A P1T sing 257 n n 
C4 C4A P1T sing 258 n n 
C4A N P1T sing 259 n n 
C4A H4A1 P1T sing 260 n n 
C4A H4A2 P1T sing 261 n n 
N CA P1T sing 262 n n 
N HN P1T sing 263 n n 
CA C P1T sing 264 n n 
CA CB P1T doub 265 n n 
CB HB1 P1T sing 266 n n 
CB HB2 P1T sing 267 n n 
C OXT P1T doub 268 n n 
C O P1T sing 269 n n 
O HO P1T sing 270 n n 
#
_atom_sites.entry_id                     6XYL 
_atom_sites.fract_transf_matrix[1][1]    0.01213 
_atom_sites.fract_transf_matrix[1][2]    0.007003 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014006 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 P1T A 1 601 601 P1T P1T . 
H 2 P1T B 1 601 601 P1T P1T . 
I 2 P1T C 1 601 601 P1T P1T . 
J 2 P1T D 1 601 601 P1T P1T . 
K 2 P1T E 1 601 601 P1T P1T . 
L 2 P1T F 1 601 601 P1T P1T . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP1 P1T . . . J 2 -37 11.065 25.74 1 71.25 ? OP1 P1T 601 D 1 
HETATM 2 P P P1T . . . J 2 -37.441 10.626 27.116 1 71.42 ? P P1T 601 D 1 
HETATM 3 O OP2 P1T . . . J 2 -38.259 9.362 27.005 1 71.85 ? OP2 P1T 601 D 1 
HETATM 4 O OP3 P1T . . . J 2 -38.278 11.713 27.746 1 71.55 ? OP3 P1T 601 D 1 
HETATM 5 O OP4 P1T . . . J 2 -36.114 10.343 28.053 1 70.72 ? OP4 P1T 601 D 1 
HETATM 6 C C5A P1T . . . J 2 -35.214 9.35 27.654 1 70.32 ? C5A P1T 601 D 1 
HETATM 7 C C5 P1T . . . J 2 -34.625 8.673 28.89 1 69.94 ? C5 P1T 601 D 1 
HETATM 8 C C6 P1T . . . J 2 -33.261 8.724 29.125 1 69.44 ? C6 P1T 601 D 1 
HETATM 9 N N1 P1T . . . J 2 -32.74 8.125 30.219 1 69.4 ? N1 P1T 601 D 1 
HETATM 10 C C2 P1T . . . J 2 -33.549 7.475 31.086 1 69.8 ? C2 P1T 601 D 1 
HETATM 11 C C2A P1T . . . J 2 -32.958 6.799 32.321 1 69.77 ? C2A P1T 601 D 1 
HETATM 12 C C3 P1T . . . J 2 -34.915 7.422 30.853 1 70.25 ? C3 P1T 601 D 1 
HETATM 13 O O3A P1T . . . J 2 -35.753 6.749 31.75 1 70.7 ? O3A P1T 601 D 1 
HETATM 14 C C4 P1T . . . J 2 -35.438 8.022 29.757 1 70.47 ? C4 P1T 601 D 1 
HETATM 15 C C4A P1T . . . J 2 -36.944 7.965 29.499 1 71.33 ? C4A P1T 601 D 1 
HETATM 16 N N P1T . . . J 2 -37.491 6.763 30.102 1 71.7 ? N P1T 601 D 1 
HETATM 17 C CA P1T . . . J 2 -38.845 6.344 29.787 1 72.39 ? CA P1T 601 D 1 
HETATM 18 C CB P1T . . . J 2 -39.182 6.087 28.541 1 72.65 ? CB P1T 601 D 1 
HETATM 19 C C P1T . . . J 2 -39.879 6.2 30.903 1 72.79 ? C P1T 601 D 1 
HETATM 20 O O P1T . . . J 2 -39.558 6.446 32.095 1 72.64 ? O P1T 601 D 1 
HETATM 21 O OXT P1T . . . J 2 -41.053 5.835 30.63 1 73.27 ? OXT P1T 601 D 1 
#
_model_server_stats.io_time_ms              206 
_model_server_stats.parse_time_ms           222 
_model_server_stats.create_model_time_ms    174 
_model_server_stats.query_time_ms           480 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           21 
#